mRNA_S-dermatodea_contig10542.379.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10542.379.1
Unique NamemRNA_S-dermatodea_contig10542.379.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig10542.379.1 vs. uniprot
Match: D7G914_ECTSI (ER membrane protein complex subunit 10 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G914_ECTSI)

HSP 1 Score: 256 bits (655), Expect = 3.850e-79
Identity = 140/224 (62.50%), Postives = 175/224 (78.12%), Query Frame = 1 
Query:  166 ATTACFA---NGNARSVVVEHAFGPEAEFIHRGALELVVDPTREVAPSATLSSVTLGSDASRLEDLIARNGLYLIKVAADDVSAHHVIAAVPACHLRLASFREDITLHVDWDGVIIGLDYKAPVGPLASTKDCTKMPVQESSQIVTNIKVVRAASAQSVPLQAVANSPPPGLANLKEIVGNQDPKPV-NQSILVKYWYVFIPLLLSWMFSATAPEEGGAGAPAA 825
            AT+  FA     +ARS+ VEHAFGP AE+ HRG LEL +DP+R  A SA+L   TL  DAS++E+LIA +GLYLI+VA D+ S  HV+AAV AC LRLASFRE+ITLHV+ DGVI+G+DYK+ VGPLAST++CTKMPV E S++VT + VVRAASAQSVPLQ + NSPPPGL+ LKE +G +D K   NQS+LVKYWY+F+P +L +MFSA  P++GGA  P A
Sbjct:    7 ATSVAFAWCVQASARSLSVEHAFGPAAEWTHRGFLELDIDPSRAKAFSASLQPATL-RDASQMEELIANDGLYLIRVATDESSNQHVVAAVSACQLRLASFREEITLHVERDGVIVGVDYKSLVGPLASTRNCTKMPVAEYSEVVTKVVVVRAASAQSVPLQVLQNSPPPGLSALKEQIGTKDAKAAGNQSLLVKYWYIFLPCVLLFMFSA--PDQGGAATPPA 227
[Close]
BLAST of mRNA_S-dermatodea_contig10542.379.1 vs. uniprot
Match: A0A7S4D4Q0_HETAK (ER membrane protein complex subunit 10 (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D4Q0_HETAK)

HSP 1 Score: 106 bits (264), Expect = 3.730e-22
Identity = 71/183 (38.80%), Postives = 103/183 (56.28%), Query Frame = 1 
Query:  211 VEHAFGPEAEFIHRGALELVVDPTREVAPSATL--SSVTLGSDASRLEDLIARNGLYLIKVAADDVSAHH--VIAAVPACHLRLASFREDITLHVDWDGVIIGLDYKAPVGPLASTKDCTKMPVQESSQIVTNIKVVRAASAQSVPLQAVANSPPPGLANLKEI---VGNQDPK--PVNQSIL 732
            VEH+F  +++F  R   E+ + P         L  S+ + G + ++++DLIA  G Y I++ ++  +     V+AA+ AC L  A+FRE+I LH+D    IIG+ Y AP   LA  +DC   P+ E  +  T IKV  A+  QSVPLQA A  PPPGLA L++     G +D K  P +QS L
Sbjct:   54 VEHSFTEDSKFSPREDWEMAISPVSRQLTVDKLQGSAQSSGMERNQIKDLIANGGFYRIRLHSNPTNPDSPMVMAAISACDLHKANFREEIVLHLDPHQNIIGMTYSAPSSVLA--RDCHSKPLPEDIKFDTKIKVAEASIGQSVPLQAQAARPPPGLAGLQKFRAAAGGEDGKGGPASQSFL 234
[Close]
BLAST of mRNA_S-dermatodea_contig10542.379.1 vs. uniprot
Match: A0A7S3P5G2_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P5G2_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.300e-11
Identity = 64/223 (28.70%), Postives = 100/223 (44.84%), Query Frame = 1 
Query:  199 RSVVVEHAFGP---EAEFIHRGALELVVDPTREVAPSATLSSVTLGSDASRLEDLIARNGLYLIKVAADDVSAH-HVIAAVPACHLRLASFREDITLHVDWDGVIIGLDYKAPVGPLASTKDCTKMPVQESSQIVTNIKVVRAASAQSVPLQAVANSPPPGLANLK---------------EIVGNQDPKPVNQSILV---KYWYVFIPLLLSWMFSATAPEE 801
            R+  + H+  P   E  F  RG + L  +P    A   TL +      A  LE ++  +G Y +K+  D  +A   V   +PACHLR A+FR++ITL     G ++ L Y   + PLA  K C  +P  +  Q  + ++   A    S+        PPPGL  +                E  G ++ K ++  I+    +YWY+ +P+ L  M  AT PE+
Sbjct:   46 RTWTLYHSMDPRLGEKGFTKRGVVTL--EPENNQA-KLTLENDEKSFSAENLE-VMMMSGWYQVKLVEDGKTATVPVKTTIPACHLRRANFRDEITLSFGQQGHVMSLAYSPLISPLAP-KTCDDLPAPQEIQFNSKVEYETAVPGMSLKTILPNYQPPPGLKFISSKHKSPGSVGGDAKPEGFGTKEEKELDTGIMGFFRRYWYIILPIFLMQMMGATEPEQ 263
[Close]
BLAST of mRNA_S-dermatodea_contig10542.379.1 vs. uniprot
Match: A0A024GPT7_9STRA (ER membrane protein complex subunit 10 n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GPT7_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 5.100e-10
Identity = 60/222 (27.03%), Postives = 110/222 (49.55%), Query Frame = 1 
Query:  193 NARSVVVEHAFGPEAE--FIHRGALEL-VVDPTREVAPSATLSSVTLGSDASRLEDLIARNGLYLIKVAAD--DVSAHHVIAAVPACHLRLASFREDITLHVDWDGVIIGLDYKA--PVGPLASTKDCTKMPVQESSQIVTNIKVVRAASAQSVPLQ---AVANSPPPGLANLKEIVGNQDPKPVNQSILVKYWYVFIPLLLSWMFSATAPEEGGAGAPAAG 828
            +A S  +EH    E+E  F  R  +++ + DP  +V      SS+  G    +L++++  + LY I+  +D  D S+ +V  ++P C L  A+FRED++ H+  D  ++G++Y+   P+   ++ ++     V     I +    +  +    +P +   A   + PPG+         +     N SIL KYWY+ +P+L+  +F A AP+   A A A+G
Sbjct:   34 SAISFQIEHNVPSESEGDFSVRSRVDINLEDPNSKVRILQIFSSLERGQ-VEKLQNMLVASELYTIRARSDPSDPSSPYVYTSIPLCMLASANFREDLSFHLTEDKKLLGMEYRTFTPLDKCSNNQNI----VTPDLTITSYGFALEPSLGPEIPKEPNFARGKNIPPGVVVEPTKEEQKKAAEENPSILRKYWYIILPILVFTLFGAEAPQTSPATASASG 250
[Close]
BLAST of mRNA_S-dermatodea_contig10542.379.1 vs. uniprot
Match: F0W3R8_9STRA (Ubiquitin family protein putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W3R8_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 8.550e-8
Identity = 59/213 (27.70%), Postives = 108/213 (50.70%), Query Frame = 1 
Query:  193 NARSVVVEHAFGPEAE--FIHRGALEL-VVDPTREVAPSATLSSVTLGSDASRLEDLIARNGLYLIKVAAD--DVSAHHVIAAVPACHLRLASFREDITLHVDWDGVIIGLDYKAPVGPLASTKDCTKMPVQESSQIVTNIK-VVRAASAQSVPLQAVA---NSPPPGLANLKEIVGNQDPKPV--NQSILVKYWYVFIPLLLSWMFSATAPE 798
            +A S  +EH    E+E  F  R  +++ + DP  +V+    LSS   G    +L++++  + LY I+  +D  D S+ +V  ++P C L   +FRED++ H+  D  ++ ++Y+    PL++    T   +  S    T+    ++ +    +P   +     S PPG+  + E   ++  K    N SIL KYWY+ +P+L+  +F A AP+
Sbjct:   90 SAVSFHIEHNVPRESERDFSVRSRVDINLKDPNSKVS-ILQLSSSLEGKQVGKLQNMLIASELYTIRARSDPSDPSSPYVYTSIPLCMLASTNFREDLSFHLTKDKNLLAMEYRTYT-PLSNC--ATNGNIIPSDFAFTSYGFALKPSPGPEIPTDTIFARDRSVPPGV--VVEPTKDEQKKAAEENPSILRKYWYIILPILVFTLFGAEAPQ 296
[Close]
BLAST of mRNA_S-dermatodea_contig10542.379.1 vs. uniprot
Match: A0A6P8SKT0_GEOSA (ER membrane protein complex subunit 10 n=2 Tax=Geotrypetes seraphini TaxID=260995 RepID=A0A6P8SKT0_GEOSA)

HSP 1 Score: 60.5 bits (145), Expect = 1.400e-6
Identity = 65/217 (29.95%), Postives = 98/217 (45.16%), Query Frame = 1 
Query:  196 ARSVVVEHAFGPEAE--FIHRGALELVVDPTREVAPSATLSSVTLGSDAS-RLEDLIARNGLYLIKV----AADDVSAHHVIAAVPACHLRLASFREDITLHVDWDGVIIGLDYKAPVGPLASTKDCTKMPVQESSQIVTNIKVVRAASAQSVPLQAVANSPPPGLANLKEIVGNQDPKPVN----QSILVKYWYVFIPLLLSWMFSATAPEEGGAG 813
            A  V +EH+F  ++   F  RG+L  + +P  E   S T+S   L  +   +L D+ + NG+Y I++      D+ S  HV + VPAC +  +   + IT+H D  G IIG+      G       CT   V++    + N  V      Q    Q VA + P   A ++ +   Q  K  N    +S   KYW   IP++L  M S  AP+ G  G
Sbjct:   40 ALEVQLEHSFELDSSIRFTKRGSL--LWNPASE--GSVTISQKQLTEEERIKLRDIASLNGVYRIRIPRKPGLDEGSVQHVTSFVPACSMVESHLSDQITIHTDLAGNIIGVSIVTVPG------SCTGAEVEDVDLELFNTTV----QVQ----QPVAAAVPETAAFIERLEMEQAQKAKNPQEQKSFFAKYWMYIIPIVLFLMMSG-APDTGNQG 237
[Close]
BLAST of mRNA_S-dermatodea_contig10542.379.1 vs. uniprot
Match: A0A4D9D7K5_9STRA (ER membrane protein complex subunit 10 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D7K5_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.640e-5
Identity = 70/240 (29.17%), Postives = 110/240 (45.83%), Query Frame = 1 
Query:  148 LLPVALATTACFANG-NARSVVVEHAFGPEAEFIHRGALELVVDP-----------TREVAPSATLSSVTLGSDASRLEDLIARNGLYLIKVA-ADDVSAHHVIAAVPACHLRLASFREDITLHVDWDGVIIGLDYKAPVGPLA-STKDCTKMPV------------------QESSQ-----IVTNIKVVRAASAQSVPLQAVANSPPPGLANLKEIVGNQDPKPVNQSILVKYWYVFI 756
            LLP+ L + A   +G N  +  ++HAFG    F  RG++E++VD             R + P A+L  +     A  ++      G+Y ++   +D  S+  V+ +V  C +  A FRE+ITL +D +G +IGL+Y   +  L+ ST    K P+                  +E S       +T +K     S +SVP+  V    PP +A  +E  G Q   P  +S L KYW +FI
Sbjct:    6 LLPLLLLSLAWLTDGSNLVTYKLQHAFGITGAFQDRGSVEVLVDSGALTLIPPPEEQRVLVPEASLDEI-----AREMKGF--NGGMYRLRAQQSDGASSSVVMTSVHLCDVVRAGFRENITLTLDVEGRLIGLEYTPRMSRLSPSTCKNIKHPLDQYHARAAEEVGRRIPGDEEGSASSPPAFMTWVKASVDDSGKSVPV-LVPGQRPPLIAIRQEEQGGQPEAP--KSFLQKYW-IFI 234
[Close]
BLAST of mRNA_S-dermatodea_contig10542.379.1 vs. uniprot
Match: UPI001E1DD8C3 (ER membrane protein complex subunit 10 n=1 Tax=Echinops telfairi TaxID=9371 RepID=UPI001E1DD8C3)

HSP 1 Score: 55.8 bits (133), Expect = 4.400e-5
Identity = 63/215 (29.30%), Postives = 95/215 (44.19%), Query Frame = 1 
Query:  205 VVVEHAFGPEAEFIHRGALELVVDPTREVAPSATLSSVTLGS-DASRLEDLIARNGLYLIKV-----AADDVSAH-HVIAAVPACHLRLASFREDITLHVDWDGVIIGLDYKAPVGPLASTKDCTKMPVQESSQIVTNIKVVRAASAQSVPLQAVANSPPPGLANLKEIVGNQDPK----PVNQ-SILVKYWYVFIPLLLSWMFSATAPEEGGAG 813
            +++EH+F  +   + R    L+ +   +   S +LS   L   D SRL D+ A NGLY ++V     A + + A  HV + VPAC L  +   + +TLHVD  G ++G+      G       C    V++    + N          +V LQ    +P P  A   E +  +  +    P  Q S   KYW   IP +L  M S  AP+ GG G
Sbjct:   31 LLLEHSFEIDGSMLFRKRGSLLWN---QQDGSLSLSQRQLSEEDRSRLRDVAAVNGLYRLRVPRRPGATEGLEAGGHVSSFVPACSLVESHLSDQLTLHVDIAGNVVGVSVVTQPG------GCRGHEVEDVDLELFNT---------TVQLQPPTTAPGPETAAFIERLEMEQAQRAKNPQEQKSFFAKYWMYIIPFVLFLMMSG-APDAGGQG 226
[Close]
BLAST of mRNA_S-dermatodea_contig10542.379.1 vs. uniprot
Match: A0A2K5Y4N4_MANLE (ER membrane protein complex subunit 10 n=1 Tax=Mandrillus leucophaeus TaxID=9568 RepID=A0A2K5Y4N4_MANLE)

HSP 1 Score: 55.1 bits (131), Expect = 7.610e-5
Identity = 54/172 (31.40%), Postives = 78/172 (45.35%), Query Frame = 1 
Query:  331 DASRLEDLIARNGLYLIKV-----AADDVSAH-HVIAAVPACHLRLASFREDITLHVDWDGVIIGLDYKAPVGPLASTKDCTKMPVQESSQIVTNIKVVRAASAQSVPLQAVANSPPPGLAN-LKEIVGNQDPKPVN----QSILVKYWYVFIPLLLSWMFSATAPEEGGAG 813
            +  RL D+ A NGLY ++V     A D + A  +V + VPAC L  +   + +TLHVD  G ++G+      G       C    V++    + N          SV LQ  A +P P  A  ++ +   Q  K  N    +S   KYW   IP++L  M S  AP+ GG G
Sbjct:   70 ERGRLRDVAALNGLYRVRVPRRPGALDGLEAGGYVSSFVPACSLVESHLSDQLTLHVDVAGNVVGVSVVTHPG------GCRGHEVEDVDLELFNT---------SVQLQPPATAPGPETAAFIERLEMEQAQKAKNPQEQKSFFAKYWMYIIPVVLFLMMSG-APDTGGQG 225
[Close]
BLAST of mRNA_S-dermatodea_contig10542.379.1 vs. uniprot
Match: A0A3L7HGV5_CRIGR (ER membrane protein complex subunit 10 (Fragment) n=1 Tax=Cricetulus griseus TaxID=10029 RepID=A0A3L7HGV5_CRIGR)

HSP 1 Score: 55.1 bits (131), Expect = 8.820e-5
Identity = 62/213 (29.11%), Postives = 95/213 (44.60%), Query Frame = 1 
Query:  205 VVVEHAF--GPEAEFIHRGALELVVDPTREVAPSATLSSVTLGSDASRLEDLIARNGLYLIKVAA------DDVSAHHVIAAVPACHLRLASFREDITLHVDWDGVIIGLDYKAPVGPLASTKDCTKMPVQESSQIVTNIKVVRAASAQSVPLQAVANSPPPGLAN-LKEIVGNQDPKPVN----QSILVKYWYVFIPLLLSWMFSATAPEEG 804
            +++EH+F  G  A F  RG+L   +   +E   SAT   ++   +  RL D+ A NGLY ++V           +  +V + VPAC L  +   + +TLHVD  G ++GL   A  G       C    V++    + N          SV L+    +P P  A  ++ +   Q  K  N    +S   KYW   IP++L  M S  AP+ G
Sbjct:   45 LLLEHSFEIGDRANFQKRGSL---LWNQQEGTLSATQRQLS-EEERGRLRDVAAVNGLYRVRVPRRPGVLDGSEAGGYVSSFVPACSLVESHLSDQLTLHVDVAGNVVGLSVVAYPG------GCRGSEVEDEDLELFNT---------SVQLRPPGTAPGPETAAFIERLEMEQAQKAKNPQEQKSFFAKYWMYIIPVVLFLMMSG-APDAG 237
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10542.379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7G914_ECTSI3.850e-7962.50ER membrane protein complex subunit 10 n=1 Tax=Ect... [more]
A0A7S4D4Q0_HETAK3.730e-2238.80ER membrane protein complex subunit 10 (Fragment) ... [more]
A0A7S3P5G2_9STRA1.300e-1128.70Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A024GPT7_9STRA5.100e-1027.03ER membrane protein complex subunit 10 n=1 Tax=Alb... [more]
F0W3R8_9STRA8.550e-827.70Ubiquitin family protein putative n=1 Tax=Albugo l... [more]
A0A6P8SKT0_GEOSA1.400e-629.95ER membrane protein complex subunit 10 n=2 Tax=Geo... [more]
A0A4D9D7K5_9STRA2.640e-529.17ER membrane protein complex subunit 10 n=2 Tax=Mon... [more]
UPI001E1DD8C34.400e-529.30ER membrane protein complex subunit 10 n=1 Tax=Ech... [more]
A0A2K5Y4N4_MANLE7.610e-531.40ER membrane protein complex subunit 10 n=1 Tax=Man... [more]
A0A3L7HGV5_CRIGR8.820e-529.11ER membrane protein complex subunit 10 (Fragment) ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10542contigS-dermatodea_contig10542:1038..7371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.1
Seed ortholog evalue1.6e-12
Seed eggNOG ortholog112098.XP_008618017.1
Preferred nameEMC10
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0012505,GO:0016020,GO:0016021,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0032991,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0072546,GO:0098796,GO:0098827
EggNOG OGsKOG4827@1,KOG4827@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons8
Model size1585
Cds size735
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10542.379.1prot_S-dermatodea_contig10542.379.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10542 1176..6659 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924162.279962-UTR-S-dermatodea_contig10542:1037..11751622924162.279962-UTR-S-dermatodea_contig10542:1037..1175Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10542 1038..1175 +
1694079060.2870648-UTR-S-dermatodea_contig10542:1037..11751694079060.2870648-UTR-S-dermatodea_contig10542:1037..1175Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10542 1038..1175 +
1622924162.37687-UTR-S-dermatodea_contig10542:6659..73711622924162.37687-UTR-S-dermatodea_contig10542:6659..7371Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10542 6660..7371 +
1694079060.4131374-UTR-S-dermatodea_contig10542:6659..73711694079060.4131374-UTR-S-dermatodea_contig10542:6659..7371Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10542 6660..7371 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924162.287475-CDS-S-dermatodea_contig10542:1175..12771622924162.287475-CDS-S-dermatodea_contig10542:1175..1277Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10542 1176..1277 +
1694079060.296236-CDS-S-dermatodea_contig10542:1175..12771694079060.296236-CDS-S-dermatodea_contig10542:1175..1277Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10542 1176..1277 +
1622924162.2956116-CDS-S-dermatodea_contig10542:1574..16821622924162.2956116-CDS-S-dermatodea_contig10542:1574..1682Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10542 1575..1682 +
1694079060.309595-CDS-S-dermatodea_contig10542:1574..16821694079060.309595-CDS-S-dermatodea_contig10542:1574..1682Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10542 1575..1682 +
1622924162.308316-CDS-S-dermatodea_contig10542:4033..41201622924162.308316-CDS-S-dermatodea_contig10542:4033..4120Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10542 4034..4120 +
1694079060.3286712-CDS-S-dermatodea_contig10542:4033..41201694079060.3286712-CDS-S-dermatodea_contig10542:4033..4120Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10542 4034..4120 +
1622924162.3270025-CDS-S-dermatodea_contig10542:4631..47021622924162.3270025-CDS-S-dermatodea_contig10542:4631..4702Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10542 4632..4702 +
1694079060.346271-CDS-S-dermatodea_contig10542:4631..47021694079060.346271-CDS-S-dermatodea_contig10542:4631..4702Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10542 4632..4702 +
1622924162.3359206-CDS-S-dermatodea_contig10542:5331..53921622924162.3359206-CDS-S-dermatodea_contig10542:5331..5392Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10542 5332..5392 +
1694079060.361302-CDS-S-dermatodea_contig10542:5331..53921694079060.361302-CDS-S-dermatodea_contig10542:5331..5392Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10542 5332..5392 +
1622924162.3465345-CDS-S-dermatodea_contig10542:5507..55691622924162.3465345-CDS-S-dermatodea_contig10542:5507..5569Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10542 5508..5569 +
1694079060.3720133-CDS-S-dermatodea_contig10542:5507..55691694079060.3720133-CDS-S-dermatodea_contig10542:5507..5569Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10542 5508..5569 +
1622924162.356812-CDS-S-dermatodea_contig10542:5919..60311622924162.356812-CDS-S-dermatodea_contig10542:5919..6031Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10542 5920..6031 +
1694079060.3819015-CDS-S-dermatodea_contig10542:5919..60311694079060.3819015-CDS-S-dermatodea_contig10542:5919..6031Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10542 5920..6031 +
1622924162.3655808-CDS-S-dermatodea_contig10542:6527..66591622924162.3655808-CDS-S-dermatodea_contig10542:6527..6659Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10542 6528..6659 +
1694079060.3945484-CDS-S-dermatodea_contig10542:6527..66591694079060.3945484-CDS-S-dermatodea_contig10542:6527..6659Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10542 6528..6659 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10542.379.1

>prot_S-dermatodea_contig10542.379.1 ID=prot_S-dermatodea_contig10542.379.1|Name=mRNA_S-dermatodea_contig10542.379.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=245bp
MRSLLPVALATTACFANGNARSVVVEHAFGPEAEFIHRGALELVVDPTRE
VAPSATLSSVTLGSDASRLEDLIARNGLYLIKVAADDVSAHHVIAAVPAC
HLRLASFREDITLHVDWDGVIIGLDYKAPVGPLASTKDCTKMPVQESSQI
VTNIKVVRAASAQSVPLQAVANSPPPGLANLKEIVGNQDPKPVNQSILVK
YWYVFIPLLLSWMFSATAPEEGGAGAPAAGAQQAPGSRGAQGGR*
back to top

mRNA from alignment at S-dermatodea_contig10542:1038..7371+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10542.379.1 ID=mRNA_S-dermatodea_contig10542.379.1|Name=mRNA_S-dermatodea_contig10542.379.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6334bp|location=Sequence derived from alignment at S-dermatodea_contig10542:1038..7371+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTAGATACTAGCCGCCAGCAAAGCCAAAGAGATAATTGAGCCCCACCCTT
ACTTAGGCCACTCGCACTTACTGGGGGGGGGCAGAGACTCGCCCATCTGC
AGACTATAGGAAGAACGCCTAGGAAGAACGCCACGACGATGCGGTCGTTA
CTACCGGTCGCTCTCGCAACAACGGCGTGCTTCGCTAATGGAAATGCACG
CAGTGTGGTGGTTGAGCATGCCTTTGGACCAGAAGCAGAGGTATGTTACC
TTGCCGCGTTTGTTCTGTCGAGATCAGGCTCTGGATTCCCAAGCCCTGCC
CCAGCAGATGTCAAGCTGGCAAAGTTGCAATTGCAAGTTGGAAAGAGGGG
ATGCTTATGCAATAAACCTCTTGTAATTTTAGGTGTATCTTCCACCCCTT
TATGGTCTGAGTCGCGCTTCATTCCCAGGAGTGTGGAACGCCAGTATTAT
ATCATAAGGCAACACAAACTACCTCTAACCTCTGTCATATTTGCGTCCAT
GTATATCTGTACTCCTGTGTGTACCGCCCGTCTAAAGTTTATCCACCGAG
GTGCTCTGGAGCTTGTGGTTGATCCTACAAGAGAGGTTGCGCCTTCTGCA
ACTCTTTCGTCGGTGACTTTGGGGTCCGATGCGTCCAGACTGGAGGTTGG
TGCCCTCGTTATGGAGGTCTGCTGCAATATCTGTCATTTAAACTCGCGTG
GGTGAAGCAGAGTTGCAAATAGAATCGCTCGACTCGCAATATCACAATAT
AGCTTTATTAGAGCTATAACCTTTGGAAAAAGACCTATACAGTATATAAT
ATTTTTCCAAAGGCTATAACCGCGCGCCCCGTGGTTGAACTGGTTGACCA
GCAGCCAGCCCACGGAGGACCCGGGTTAAAATCCCGGCAGAGTCGATATT
TATTCATGTTCTCTACCTCCACCGCGGAAAGCGCGAGAGCGTGAGTAACA
ATAAAAAACGAGAAATCGGCGGGCTTTGGGAGTGCCGAACCGAATGCGCG
ATAAAAATCAAAGGTGAGAACCGGGGAGAGATGGGATGATCCCTTGTGAC
CACAGACGGACCTCGGAAAAGCAAGTCTATCATACTTCTTATGTGTCCCA
ATAACAACAACAACAACACTGCTGTAGTAGCTCCATTATACTTGTAAACA
AAAGCAGAATAAATTGAAATTGCCCATAGAAGCTCTCGACATCTCTGTAG
GCCGCATTTTATTTTATGTTCCACCCTTGTTGATGTGGTGCATCTCCGCT
GTTTTATGTTGGTATATTGTACACGACGACGGAGCCTGGATGCTGAAGCT
GCAGGTGGTGTCGACTGCTGTAGGCCGACTTGCGTCAGGCTGACCTTGGC
TCTCATATTATCCAAATGTACTTGTACAAAACATGACAAAGAGAGGGGTG
GTTTTCCGTGAAAATATACAAGCATGACTAAACGTGGAACCCAGTACCAG
GTACAGTATGATACCTGTAATGGGCCTTGGCGAGGTATCCAACGCCCGAT
CTATGGATCTCACCGGAGTCGAATTTCGTGCACGAATGAGCGAGAATAAT
ACCTCGGCCGCACCGTTGCCTGTGTTGGTGGTGGGTCACAATGGAGGGCA
TCTGCGGAAGACACACCGTTGCGAACTTAGTGTCATACCCAAGCTAAAAT
TTATTTACTCGAGGTCGTGCAGTGCGCAGAAGGGAAACCTAACCCTCACG
AGTTTGGCCCTATTGATATATTGAACAGTCAGTACTCATTTCCCTGTCCA
CGCCTCTTTGGCGGCCATCTTTGCGGGTTATTTGTGTTGGAAATGTGATG
TGCTTAGTCGGCTGTACAAGACTATTGATTTGTCGCCCTTCATTCAGCGT
AGGCGCGATCGACGCAAAAACAATAAATCAGGAGTTGGAAGTTTCCTTAC
ATTTTGGACTCGACTCGCCTTCGTTGAGCTTTCAATTCTCAAACAAGGAG
ATAATGTTGGAGTGGCCGGTTCATCCTGTTGCTGGCATTCTTCGCTAGCC
TCGTGTAGATGGACTGCTCTAGCTGAACTGCCCCTTCCGGGGTAAAATTG
CGCGTCTGCAATTACTGCCCCTACATTTGACCTTCTAACGACGCCTTGAT
TTAGTGTATGGTTATCCTGCACAGGTTGCACGACCTCATCTTAAAGTTGT
GGAAGCCGTGTGTCGAGTGCAAGTACGTGCTCCGGTTGAAGATGCTCATG
GCTGTGCTATATAGTCTTCCGCATTTCGCGCATGGACACAGCTTTTCCCT
GGACCTTTTCGCACACATGCTCGTACCGCCAACAATGCTGGGACCCTCAT
GCGGAGCGATTGATGATGACACTTACAACCGATCGGCCCACTATCGGTCG
TCGATCCCGCTGATGGTCAGACGATAAATCGAAACTCCAACCACCCTCAA
CATAGTACAGTATATGAGAAAAATCAACACCACGCTCGATGTCAGGCCAC
AACACACTTGGGTCTGCTGAACAGCTCACCTCCACATCAGGTGCAAAATA
ATGATGAGATACAGCAGTAGCAATGTAATGAAATTATATAAGCTAAAACG
ACAGACGAAACCGACCATGCAATGTCCTCTCGCCCGGAGCCAACAACACG
TAGGTATAAGTATGATATGCATTCAAGACTGATCGATCAACCAAGAAGCG
TTTTTGACAGCATGTGCACCCCAGGGTGACACGCTGCAAGCGTAGTCTGT
TTCCGGTTTATGAGAAGAAGATGCTGCGCGAGCGACATGGCTTCGAACAG
CTGCGGGTGATGCCAACAACGTTTTGGGCATTCACGATTCGCCGTCTGAT
TTGCAAGCGTGTTACTGTTTTTGTGCCTTCATATCTTCGAACAAAATAAC
AGTGAGGCTTCGGCCGTGTTGCGGAGCGTTTTGTGCTGTACCAACGCTTG
CCTTTCGTCTCACGAACGGCGGCCGAGCGCATTTTGCGCGTTTACGACGA
CGAGGCAGCTGTGGCTGTAAATTTCCTCTTATACGCTACTTGGCAGGACC
TCATTGCGCGAAACGGGCTCTACCTGATCAAGGTTGCCGCCGATGACGTA
TCAGCTCATCACGTTATCGCGGCTGTACCAGCGGTGAGTATGCGGTATGA
TGTGCATAGAAGTACGGCAGTATCATGGTGGGGTTTTTGCTGGCAGGACT
GAAGGGGGCGTCGGCTGCTGTTTGGTTCCAGGATGTTCGGCACATTTTTG
ATGAGAAGGCGGCTGTCTCTCGTCTGTCTTGAACGGAAACCGTGTCTTTG
TCCTCCATTTATACACACCAATCAGCAAGGAACCTGCTTGGTGCTGAGAA
AATGCAAGTACACTTGTATTTACGTTTGTTCGGCATAGGTGGTAACTCGA
CATTCCGTGCACCTCCTTTGTGCAGACCCGTGATGGGTATTTTCTCTTAG
CTCATGTCCTGCAACAACCCGCGCTATTGCCGCTTCACGGCATATTGCTC
TATCACGTTCGTTTGGCAGGGCACGGTAGTAAAGTGTATGCGTGAAAAGC
CTACACATGAGCGAGGTACAAAACCTCATCTGCCAGAAAAATATAAACCC
TGGCCGCCGCCACTCCTCTCGGTCTCTTGTTCGTGTTTGTGAAGTGCCAC
CTTCGACTGGCCTCCTTCAGGGAAGACATCACGCTGCACGTGGACTGGGA
TGGAGTGATTATTGGGTAAGCTCCTTGTTGCGTATTGCGTGCATGACTGG
TCCGCATTCCCTTGGTATGGTGCCAAGTCCCCGCTGTATATTTACGTAAA
AGCCTAATATCCCCCCAACCCACTCAGCACTCGGACGCTTGCCCTCTAAT
CCGACCGGTGTGAAAACTATTATTATAGCAGGGTTGATGGACGTTCTTGC
CGTTAGTTTATACCGCCTTTTGCAAACAATGTCGCACGTGCACTTTATTT
TGGTTGAGCTCGTTGCGTTTATTTGTGTATGATACGTCACAGGACACGTG
CCTTGTTACTCAGGACGGAGAACGCCGGGCACAACAGACCGCAAACCGGT
CTCTCACGCCACCCACAGCGTTGTCGACACGAGTTGTTGCCGTTGAGTTG
GGGGGAACCGAACTCTTGGATAGAGGAAGTTACACGCAGCCCTTTTTCTC
GTCGCTCCCTGAAGAATTATAGAGTGGTATTTGCTCTGCCGGGTTCTACA
ACTGTCAGTGTTGAAAGGGTAAGGTCATCCTCATAAGTGAAATATCGCCG
ATGGCAGTGGAGTGCGTATTATGCACGGAGCACTCCATTTTGTATAATGC
TTGTATACCGCCATGGCGTCGTCGTTCTATCCAACGCATGCAAGGTTGGA
CTACAAGGCCCCGGTTGGACCTCTCGCCAGTACGAAGGACTGCACCAAAA
TGCCAGTGAGTGCAGTGGAGAGATTGTGTTGATAAGTACAAGACAGGTGT
CATGTGGCAAACACCGCGTGCTGAGACTAACCTGTGGAGTTGCTTTATAT
TTTAATCCGAATACCTGCAGGTCCAAGAGTCTTCGCAAATTGTCACCAAC
ATCAAGGTCGTTCGCGCCGCTAGTGCTCAGAGGTGAGAACGCCCTTGCTG
CGTGACATTTATGTCGAATCCTCATCACACGCATAAAAAGCTGGCGAATT
GCGTCAGAATTGCGTCAAAATGTTTTGCAACGAAGTGGCAACTTTTTCTT
GTGCCGTTTGTACCCTGATATGGTGACTCACTTGATATCTTGGGGTCACT
ACTGCACTACTTACAATAATAGTATATATTAATAGTATCGTATGCTGCTG
AAAATGAACTGCGGGTGGATTGGTCGGGGCTAGAAGCGACCGGCTCCTCA
CTCCTCAACTGTATGTAGTTCATTGTCACAACATATTTTTCGAACGACTG
CCGGATTATTATTTTTTTCTCCTGTGTGGCAGCGTTCCTCTTCAAGCGGT
TGCCAATAGTCCTCCTCCTGGGTTGGCCAATCTAAAGGAGATCGTCGGGA
ATCAAGATCCCAAGCCCGTGAACCAGAGCATCCTCGTCAAATATGTGAGA
ACCACGAAGCACGAAGGTTCCACAGTTCCTGTTTGCGAGCGAATCACCGT
TCCTTGGGGCGTTCTGCAAAAGTGGATCGAAGCAGTATAGTATTAGTAGC
AAGGACGCCCGTATTTCAGCTTTTGGCGCTTAGACCTCAGCGTGTCTTCT
CTCTGATAGAGTTAGTACATCGTGTGTGGAAAACGTTTCCATCCTGCTTG
TAGAGGATCACAAACTTAGACTAACACGTGCATTGGAGCTGTGGGGTATC
CTGGAAATGTCTTGCAAAAACTTCGTGCGATCGATATCCTCTGGATGTGC
GTAGTTTTCTCCAGGCTTTTGACTTCATAGGGTCCCGAAGAACATACAGT
ATCGTACGATACGTGACCGCCTGGTCAGCCAGCACATGGCACTGTAACAA
ATGTTGTGCAATTGCTCCGAGTTTCACCTCCACTCTCCTCCCTGTCGATC
CACTATGCGCTGCCGTTCGTGTCGCTCTCTTCCCTCGCAGTGGTATGTGT
TTATCCCACTGTTGCTGTCCTGGATGTTTTCCGCTACCGCACCGGAGGAA
GGGGGCGCTGGTGCACCCGCCGCAGGAGCGCAACAAGCACCGGGTAGCAG
GGGTGCACAAGGCGGACGATGACGCCTGAGAGATATGGCACACCAACAAT
TTGGCCACTTCTCGCTTGGGCCACGTGGCCTCCCGCCGGCTTTTCGAGCT
TGGCCTGCCGGCCGTGTTATGTCGTTTTTCTCGGCCGCGGAAGTCCCTCG
GCTGCGTTAGCAGCTTCGAGGGGGGCATACGTTATCTTCGGCTTAGTGTC
AGTACGGCGGTACTGAGACGAAGCCTTTTATTTTTGTCTTTCGGAAATTC
GGTTTGATTTTAGGTCATCTTGGGCATCAAACTATCTAATTAAACGAATC
GTCGCCGGTGTACGCCTAATACCCCTTTGAAGAGGAGAGCACACGTGACC
GCAGTACCACGCTTTGCGGCCGTGGTTGTGCTACGTTGTCGCTACAGTAG
GAATACCTCTTACCAGCGCCTGCAGAAGACATTTGTTCGGTTCGGTCATG
TGGTGAGGTATTTGACGAATCCCATCTTATATTTTATCAGGTTCACGTTA
GCAACCAAATCCAAGGCATTGTATTGTGAGAGGTGTGAGTGAGGGCGTTT
GGGCAAGAAGAGCATCCTTCATCATTTTCCGTCTGCCACGGGCGCCAAAT
GTGCCCAGTAATTTTTTTAAAGCCCGAGTCGGCAATGCCGCTAGAGCATG
GAAACTGCAGTTTAATGCAGTTTGTAACTCTACAAGTCAGCACAGAGCAT
CACAACAAATACGGACGCCTCGTCTTCGGCCGCA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig10542:1038..7371+

>mRNA_S-dermatodea_contig10542.379.1 ID=mRNA_S-dermatodea_contig10542.379.1|Name=mRNA_S-dermatodea_contig10542.379.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1470bp|location=Sequence derived from alignment at S-dermatodea_contig10542:1038..7371+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGGTCGTTACTACCGGTCGCTCTCGCAACAACGGCGTGCTTCGCTAA
TGGAAATGCACGCAGTGTGGTGGTTGAGCATGCCTTTGGACCAGAAGCAG
AGATGCGGTCGTTACTACCGGTCGCTCTCGCAACAACGGCGTGCTTCGCT
AATGGAAATGCACGCAGTGTGGTGGTTGAGCATGCCTTTGGACCAGAAGC
AGAGTTTATCCACCGAGGTGCTCTGGAGCTTGTGGTTGATCCTACAAGAG
AGGTTGCGCCTTCTGCAACTCTTTCGTCGGTGACTTTGGGGTCCGATGCG
TCCAGACTGGAGTTTATCCACCGAGGTGCTCTGGAGCTTGTGGTTGATCC
TACAAGAGAGGTTGCGCCTTCTGCAACTCTTTCGTCGGTGACTTTGGGGT
CCGATGCGTCCAGACTGGAGGACCTCATTGCGCGAAACGGGCTCTACCTG
ATCAAGGTTGCCGCCGATGACGTATCAGCTCATCACGTTATCGCGGCTGT
ACCAGCGGACCTCATTGCGCGAAACGGGCTCTACCTGATCAAGGTTGCCG
CCGATGACGTATCAGCTCATCACGTTATCGCGGCTGTACCAGCGTGCCAC
CTTCGACTGGCCTCCTTCAGGGAAGACATCACGCTGCACGTGGACTGGGA
TGGAGTGATTATTGGTGCCACCTTCGACTGGCCTCCTTCAGGGAAGACAT
CACGCTGCACGTGGACTGGGATGGAGTGATTATTGGGTTGGACTACAAGG
CCCCGGTTGGACCTCTCGCCAGTACGAAGGACTGCACCAAAATGCCAGTT
GGACTACAAGGCCCCGGTTGGACCTCTCGCCAGTACGAAGGACTGCACCA
AAATGCCAGTCCAAGAGTCTTCGCAAATTGTCACCAACATCAAGGTCGTT
CGCGCCGCTAGTGCTCAGAGGTCCAAGAGTCTTCGCAAATTGTCACCAAC
ATCAAGGTCGTTCGCGCCGCTAGTGCTCAGAGCGTTCCTCTTCAAGCGGT
TGCCAATAGTCCTCCTCCTGGGTTGGCCAATCTAAAGGAGATCGTCGGGA
ATCAAGATCCCAAGCCCGTGAACCAGAGCATCCTCGTCAAATATCGTTCC
TCTTCAAGCGGTTGCCAATAGTCCTCCTCCTGGGTTGGCCAATCTAAAGG
AGATCGTCGGGAATCAAGATCCCAAGCCCGTGAACCAGAGCATCCTCGTC
AAATATTGGTATGTGTTTATCCCACTGTTGCTGTCCTGGATGTTTTCCGC
TACCGCACCGGAGGAAGGGGGCGCTGGTGCACCCGCCGCAGGAGCGCAAC
AAGCACCGGGTAGCAGGGGTGCACAAGGCGGACGATGATGGTATGTGTTT
ATCCCACTGTTGCTGTCCTGGATGTTTTCCGCTACCGCACCGGAGGAAGG
GGGCGCTGGTGCACCCGCCGCAGGAGCGCAACAAGCACCGGGTAGCAGGG
GTGCACAAGGCGGACGATGA
back to top