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Homology
BLAST of mRNA_S-dermatodea_contig1049.341.1 vs. uniprot
Match: D7G051_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G051_ECTSI) HSP 1 Score: 292 bits (748), Expect = 4.070e-92 Identity = 201/402 (50.00%), Postives = 247/402 (61.44%), Query Frame = 1
Query: 1 RNRARAKARDADVALFMLRAAGRRCLRAWRERRQRRAHALRVADQYMARGG-APLAALDRG--RRVDVLGATFALRAWRASTLESAASLAARRVVVTRSESRLRASAITAWRAYADERRRWRGLLRLGKAHNARSLGSTGLLRFEERTNTARACRGYLEAGDAHWRRRGAVLITEHLRNFVESRNHVVRRADALRLRVAALAGLCRWLQAARDTRISRSASIKGDKRMRKRMSRAGLYALAGTAARRIAQDRAMQAAQQRLRRRHVAAAVKLWRFWTRRQAAGAELHAAAGALRRGWMASAGLRALDRVARARAARREAGNTAERHLLRKAGLEQWRLATTSRRRERNGKMTATVHWATTLSARVLLSWQVAAVQQWAGSRQEEAAEQYHRLACKKRAMKAW 1197
R+ RA+ R A VA F+ RA R LRAW ERR+RR A R A+ + AR +P AA R RR L A +WRA+T S +ARR VV ESRLR+ AI AWR +AD R R RGLL AR L GL + ARA R + GD HWRRRGA ++ LRN ESR +VRRA AL LRVAA AGL RW Q+ARD+R++R A +KG+ R++ R G+ L+G R Q AV WR WTRR+AA A+L+ A AL R W+ SAG+RALDRVARAR +RREA AERHLLR GL +WR A SRRR R+ ATVHWA TLS++VL+SW+ AA+QQWA +RQEEAA ++ RLA K+RA++AW
Sbjct: 3 RDTGRARGRAAAVAFFLSRAVAGRWLRAWVERRRRRLEATRAAEDHRARAAVSPGAARWRRQRRRDQQLRMEAAWSSWRATTRGRRTSRSARRAVVEAVESRLRSGAIGAWRGFADGRLRRRGLLAEAAQSRARRLKGKGLRGLKGGALDARAPRDAVWVGDEHWRRRGAAIVVARLRNLTESRRRMVRRAAALCLRVAARAGLTRWRQSARDSRVAREACVKGEAWRREKARRDGVSMLSGRLGGRAEQKXXXXXXXXXXXXXXXXXAVAAWRGWTRRRAAAADLYEGASALHRSWVLSAGMRALDRVARARTSRREAIVVAERHLLRFYGLGRWRAAAASRRRARSRAEIATVHWARTLSSKVLISWEAAALQQWAETRQEEAAARHERLAGKRRALRAW 404
BLAST of mRNA_S-dermatodea_contig1049.341.1 vs. uniprot
Match: A0A6H5JMA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA0_9PHAE) HSP 1 Score: 295 bits (755), Expect = 8.930e-86 Identity = 203/402 (50.50%), Postives = 248/402 (61.69%), Query Frame = 1
Query: 1 RNRARAKARDADVALFMLRAAGRRCLRAWRERRQRRAHALRVADQYMARGGA-PLAALDRG--RRVDVLGATFALRAWRASTLESAASLAARRVVVTRSESRLRASAITAWRAYADERRRWRGLLRLGKAHNARSLGSTGLLRFEERTNTARACRGYLEAGDAHWRRRGAVLITEHLRNFVESRNHVVRRADALRLRVAALAGLCRWLQAARDTRISRSASIKGDKRMRKRMSRAGLYALAGTAARRIAQDRAMQAAQQRLRRRHVAAAVKLWRFWTRRQAAGAELHAAAGALRRGWMASAGLRALDRVARARAARREAGNTAERHLLRKAGLEQWRLATTSRRRERNGKMTATVHWATTLSARVLLSWQVAAVQQWAGSRQEEAAEQYHRLACKKRAMKAW 1197
R RA+ VA FM RA R LRAW ERR+RR A R A+ + AR P AA R RR L A +WR +T S +ARR VV ESRLR+SAI AWR + D R RGLL AR L GL + ARA R + GD HWRRR A ++ LRN ESR +VRRA AL LRVAA AGL RW Q+ARD R++R A +KG+ R + R G+ L+G RR DRA++ + L RR AV +WR WTRR+AA A+L+ A AL R W+ SAGLRALDRVARAR +RREA AERHLLR GL +WR A SRRR R+ ATVHWA TLS++VL+SW+ A++QQWA +RQEEAA ++ RLA K+RA++AW
Sbjct: 2267 REAGRARGCATAVAFFMSRAVAGRRLRAWVERRRRRLEATRAAEDHRARAAVNPGAARWRRQRRRDQQLRMEAAWSSWRETTRGRKMSRSARRAVVEAVESRLRSSAIGAWRDFVDGRLARRGLLAEAAQSRARRLKRKGLRGVKGGALDARAPRDAVWVGDEHWRRRRAAIVVARLRNLAESRRRMVRRAAALCLRVAARAGLTRWRQSARDWRVAREACVKGEAWRRDKARRDGVSVLSGRLGRRAKHDRAIRVSTLHLSRRLAGRAVAVWRGWTRRRAAAADLYEGASALHRSWILSAGLRALDRVARARTSRREAIVVAERHLLRFYGLGRWRAAAASRRRARSRAEIATVHWARTLSSKVLISWEAASLQQWAETRQEEAAARHERLASKRRALRAW 2668
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-12_007260.1 |
| Exons | 5 |
| Model size | 1197 |
| Cds size | 1197 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig1049.341.1 >prot_S-dermatodea_contig1049.341.1 ID=prot_S-dermatodea_contig1049.341.1|Name=mRNA_S-dermatodea_contig1049.341.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=399bp
RNRARAKARDADVALFMLRAAGRRCLRAWRERRQRRAHALRVADQYMARG GAPLAALDRGRRVDVLGATFALRAWRASTLESAASLAARRVVVTRSESRL RASAITAWRAYADERRRWRGLLRLGKAHNARSLGSTGLLRFEERTNTARA CRGYLEAGDAHWRRRGAVLITEHLRNFVESRNHVVRRADALRLRVAALAG LCRWLQAARDTRISRSASIKGDKRMRKRMSRAGLYALAGTAARRIAQDRA MQAAQQRLRRRHVAAAVKLWRFWTRRQAAGAELHAAAGALRRGWMASAGL RALDRVARARAARREAGNTAERHLLRKAGLEQWRLATTSRRRERNGKMTA TVHWATTLSARVLLSWQVAAVQQWAGSRQEEAAEQYHRLACKKRAMKAW back to topmRNA from alignment at S-dermatodea_contig1049:10187..13998+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig1049.341.1 ID=mRNA_S-dermatodea_contig1049.341.1|Name=mRNA_S-dermatodea_contig1049.341.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3812bp|location=Sequence derived from alignment at S-dermatodea_contig1049:10187..13998+ (Saccorhiza dermatodea SderLu1190fm monoicous) CGGAATAGAGCTCGGGCAAAAGCGCGCGATGCTGATGTCGCGCTGTTCAT
GTTGCGGGCGGCGGGACGACGGTGTCTTCGCGCGTGGAGGGAACGGCGAC
AACGGCGAGCCCATGCTCTGCGGGTTGCGGATCAGTACATGGCGCGGGGG
GGCGCTCCGCTAGCGGCGCTGGATCGGGGACGGCGAGTTGATGTGCTGGG
CGCAACGTTTGCGTTGAGGGCGTGGCGGGCGTCAACACTGGAGAGTGCTG
CATCGCTCGCGGCGCGGCGCGTCGTGGTCACGCGCAGCGAGAGCCGCCTA
CGGGCGAGTGCCATTACGGCATGGCGAGCATACGCGGACGAGAGGCGGCG
GTGGCGAGGTTTGTTGAGATTGGGGAAAGCACACAACGCGCGGAGTTTGG
GCAGCACCGGCCTGTTGAGGTTTGAAGAACGAACAAACACCGCGCGCGCT
TGTAGGGGTTATCTCGAAGCCGGTGACGCGCATTGGAGACGGCGAGGAGC
GGTGCTCATTACCGAGCATTTACGGTGAGCAAGAAGATGAATTCGGTGAA
CACGGCAACGTCTTTCACCATTTTCAGGACTACAGGAAGCGGCGCCGTGT
AGGGAAGCGAAACCCTGTGCTTATTTGTTCTCCTAACGAATGCGTGTTGG
AGCCGACCGTACTGCCCCCTAGGTTTCGATGGCGCCAAGGCTCTCCGCGA
CTAGGAGGCCATACATCTACCGTTTGCAGCATATTATGCGGGATTCAGCG
AATCCCCCCCCAGAGTCTTGTTTCTCCCCAAAGGGGCGAAACGCATCACA
TCCTATGGGACACCTGCTGAACATTGGATTGTTGGAACCATTGATTTATG
AGTAGTACTCCGCCAGGAGTACTCATGAGCAGATTATAGTCCGAGAGTAT
CATGCATATACCGTCGTGTATGTTATGTGCGTGCGGCGCTCTTGCATACG
CACGGTGATAAAAGTCCCATTGCGATACTTAGAGTATAGTCACAGCTACT
GAATGTGCAACATTTGGTAGTCAGGTGTCTACTCAACCCATGGCATACCG
TTTGGCGTCGCAAACGCAAGGTAGATGACCAGCAGCTGGTATCACCCTTG
TGAAACGCAGCCTGGCCGGCGAAAACCGGGCATATCGCTCCGTCCCGGCA
TTGTTGAGACGCGTGACCTAAGTCCGTGTGGATACGACATGCGTTTGACA
TAAGTACACCCCCGCCGCCGTCTCTGTCTGCACCTCAAGCAATTTCGTGG
AATCACGAAATCACGTGGTCCGCCGAGCCGACGCTCTGCGCCTGAGAGTC
GCCGCCCTAGCCGGTCTCTGCCGCTGGCTGCAGGCGGCGCGAGACACTCG
AATCTCGCGGAGTGCTAGCATTAAAGGGGACAAACGAATGCGGAAGAGGA
TGTCCAGGGCAGGCCTATATGCGTTAGCAGGTACCGCGGCTCGACGAATC
GCGCAGGACCGGTGAGACGTGCGCCGCGTTAGGGCCTATGGGGTTTGGAA
CAGTCCGAAGGGGGTGGCGGGTTGGCGTAGAGCTAAACCAGGTGTTGTCA
GGACGCATGGGTACACCACGCCGTGTGGACGCAGGCAAAAACTTCAGCCT
TAGCCGCACGTTACCTGTAACCTCTCATTACATGCTAACCTTACCCGGAG
TTGAGGTGGAAATTTAAAATTTCGCCTTCAGCGTTACGTGCTGCCTAAAG
GGGCAAACACACCAAACAACGCGCAACACCTTGCAGCCTATGGTTGGCGC
GACAAACACATAAGCTGCCTTGAGCACTGTCTTTTACCGATCTTCACATA
TCTTCATATTCAGTAATTTAGCATGACAGCCTCTGCTGTAGCATTGTACC
TCCCCCCCCCCCGCCCCCCTGACGACATATTGCGAGTAAGCAACCCCTCC
TGCCTTTGCCTGCATGACTCCACCTTCCATCTACAGCGCAATGCAAGCCG
CCCAGCAGCGTCTTCGGCGCCGCCATGTCGCCGCTGCCGTAAAATTGTGG
CGCTTTTGGACTCGACGTCAAGCGGCCGGCGCAGAGCTCCACGCGGCGGC
GGGGGCGTTGCGTCGAGGCTGGATGGCGTCCGCGGGATTGCGGGCCCTTG
ACCGAGTGGCGAGGTGCGCACGGTTGTGGACTTCTAGACCCAAAGCATTA
AGTTTGCTACTAACATCTTCAACCCTGAAGTGTTTTCCCACAGGGTGTGT
CCTCCCCGTCCATGTTTCCTTGGGGCCAACGCTCCCTCCCCTTAAACATT
CATATATATACTTCGAAGTATATAAATAAAACACAGGGCGAGCGTTGGGG
TCCAATCTCTTTGTAAAGAAAAATATGGTGCCGAGCAAACTCAGTGGAGG
TCTACGGTATCTATGACGCTGCTGTGGTGTCGTTGTATAAATGTTACTAT
CTGGGTAGGGGTATGGCTAGGTATGGCACTACAATACTATTAAAATGTAA
CTCTGGGAATGGAATGTTTCCAAGTGTGCCCCCGCATCAGCGCGCGCCGG
TAAAACAAATGTTCCTTGTCCCAACCCGAGCATTCCAGCTGGCCGTTGTA
TTTTCGGCGTGTGCCACGGAGGGACAACGTACTTTGTCGCCTTTCTCGAC
CGCATTATTACGGCTTTCGTTTTTGCTGCAAAATTCCGCCATCTCTGGCG
CAGTAGGTCAAGTGTTGGAGGGGCGCAGTGTACGTCCAAGGACAGAAACA
TCCACTTGACTGAGCGCACGAGAAAGCAGCGGTAGATGGCATGCTGCGGT
CCTACTGAAGGTGAAACTTCGAGCGTAATTTCGCGAATGCTGGTCCGTCT
CTTGTCTTATCAGGGCGAGAGCAGCGCGGCGAGAAGCTGGCAACACCGCG
GAGCGACACCTGCTGCGCAAGGCCGGGTTGGAGCAATGGCGCCTTGCGAC
TACCTCCAGGAGGCGCGAGAGGAACGGGAAGATGACGGCCACCGTGCACT
GGGCGACAACACTCTCGGCAAGGGTAAGCGCAGGGCGTCATGGGCTCTGC
TTCTTGATCCGAGATACAGGAACGCGTGGGCTTTCAACCCATCTGATAAA
TTCGCGACATCAGGGGACAACGCATTAGGATGTTGGGATCAAATGACGTC
GTAGAGGACATGAGTTAGAGTTAGAGCCGCTATTTCTTGCCACGTTGGTC
GAATGATCCCAGGTTCTCTGCTTGTTGGGTTTGGTACCCGAGCGGCAAGA
AGAGCTCGTGCTGTGCCACAAAGTTCATATGATATGTTCCCGTTCGAATG
ATTGTGTAGAGTCGTTTCTCCCAGGCTGTTTTCAACTCAATCCGGGGCCC
ACAATGGCCGACACACGTTCCAAGATTGAGGGTTTGTTATCCCTGTCATC
TAAATGAACCTCCGGATACCTTCCAGCGTATGGCGTTTACATTTCGCCTC
ATGTCGAATGATGATTTAGGTCGCATGCTAGGTCTTAGTCAGGCACATAA
GGTAGTGCGTAAGCTATCCGCGGGCTAGATATATTTAAACGCAACCAAAA
TCGATTCAACTCGCAAGTGATTTCGCTGTCTAGCTAACCTTTTCTCGGCA
CATGTTTTCTAATTTTCTAAGTGTTTGAGCTGGGGGCAGGAAGAGCCCTA
CAGAACGGTTTGCTTCCTCTATGTGACAATTATTGAGTTAACCCCAAGGA
CGACGTTCTCACTAAAACACTTATACCCGTAACGTCGTACTCTCGAAGGT
TCTGCTGTCATGGCAAGTAGCAGCTGTGCAACAGTGGGCCGGATCGAGGC
AAGAGGAAGCGGCTGAGCAGTACCACCGCCTAGCCTGCAAAAAACGGGCG
ATGAAGGCGTGG back to topCoding sequence (CDS) from alignment at S-dermatodea_contig1049:10187..13998+ >mRNA_S-dermatodea_contig1049.341.1 ID=mRNA_S-dermatodea_contig1049.341.1|Name=mRNA_S-dermatodea_contig1049.341.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2394bp|location=Sequence derived from alignment at S-dermatodea_contig1049:10187..13998+ (Saccorhiza dermatodea SderLu1190fm monoicous) CGGAATAGAGCTCGGGCAAAAGCGCGCGATGCTGATGTCGCGCTGTTCAT GTTGCGGGCGGCGGGACGACGGTGTCTTCGCGCGTGGAGGGAACGGCGAC AACGGCGAGCCCATGCTCTGCGGGTTGCGGATCAGTACATGGCGCGGGGG GGCGCTCCGCTAGCGGCGCTGGATCGGGGACGGCGAGTTGATGTGCTGGG CGCAACGTTTGCGTTGAGGGCGTGGCGGGCGTCAACACTGGAGAGTGCTG CATCGCTCGCGGCGCGGCGCGTCGTGGTCACGCGCAGCGAGAGCCGCCTA CGGGCGAGTGCCATTACGGCATGGCGAGCATACGCGGACGAGAGGCGGCG GTGGCGAGGTTTGTTGAGATTGGGGAAAGCACACAACGCGCGGAGTTTGG GCAGCACCGGCCTGTTGAGGTTTGAAGAACGAACAAACACCGCGCGCGCT TGTAGGGGTTATCTCGAAGCCGGTGACGCGCATTGGAGACGGCGAGGAGC GGTGCTCATTACCGAGCATTTACGCGGAATAGAGCTCGGGCAAAAGCGCG CGATGCTGATGTCGCGCTGTTCATGTTGCGGGCGGCGGGACGACGGTGTC TTCGCGCGTGGAGGGAACGGCGACAACGGCGAGCCCATGCTCTGCGGGTT GCGGATCAGTACATGGCGCGGGGGGGCGCTCCGCTAGCGGCGCTGGATCG GGGACGGCGAGTTGATGTGCTGGGCGCAACGTTTGCGTTGAGGGCGTGGC GGGCGTCAACACTGGAGAGTGCTGCATCGCTCGCGGCGCGGCGCGTCGTG GTCACGCGCAGCGAGAGCCGCCTACGGGCGAGTGCCATTACGGCATGGCG AGCATACGCGGACGAGAGGCGGCGGTGGCGAGGTTTGTTGAGATTGGGGA AAGCACACAACGCGCGGAGTTTGGGCAGCACCGGCCTGTTGAGGTTTGAA GAACGAACAAACACCGCGCGCGCTTGTAGGGGTTATCTCGAAGCCGGTGA CGCGCATTGGAGACGGCGAGGAGCGGTGCTCATTACCGAGCATTTACGCA ATTTCGTGGAATCACGAAATCACGTGGTCCGCCGAGCCGACGCTCTGCGC CTGAGAGTCGCCGCCCTAGCCGGTCTCTGCCGCTGGCTGCAGGCGGCGCG AGACACTCGAATCTCGCGGAGTGCTAGCATTAAAGGGGACAAACGAATGC GGAAGAGGATGTCCAGGGCAGGCCTATATGCGTTAGCAGGTACCGCGGCT CGACGAATCGCGCAGGACCGCAATTTCGTGGAATCACGAAATCACGTGGT CCGCCGAGCCGACGCTCTGCGCCTGAGAGTCGCCGCCCTAGCCGGTCTCT GCCGCTGGCTGCAGGCGGCGCGAGACACTCGAATCTCGCGGAGTGCTAGC ATTAAAGGGGACAAACGAATGCGGAAGAGGATGTCCAGGGCAGGCCTATA TGCGTTAGCAGGTACCGCGGCTCGACGAATCGCGCAGGACCGCGCAATGC AAGCCGCCCAGCAGCGTCTTCGGCGCCGCCATGTCGCCGCTGCCGTAAAA TTGTGGCGCTTTTGGACTCGACGTCAAGCGGCCGGCGCAGAGCTCCACGC GGCGGCGGGGGCGTTGCGTCGAGGCTGGATGGCGTCCGCGGGATTGCGGG CCCTTGACCGAGTGGCGAGCGCAATGCAAGCCGCCCAGCAGCGTCTTCGG CGCCGCCATGTCGCCGCTGCCGTAAAATTGTGGCGCTTTTGGACTCGACG TCAAGCGGCCGGCGCAGAGCTCCACGCGGCGGCGGGGGCGTTGCGTCGAG GCTGGATGGCGTCCGCGGGATTGCGGGCCCTTGACCGAGTGGCGAGGGCG AGAGCAGCGCGGCGAGAAGCTGGCAACACCGCGGAGCGACACCTGCTGCG CAAGGCCGGGTTGGAGCAATGGCGCCTTGCGACTACCTCCAGGAGGCGCG AGAGGAACGGGAAGATGACGGCCACCGTGCACTGGGCGACAACACTCTCG GCAAGGGGCGAGAGCAGCGCGGCGAGAAGCTGGCAACACCGCGGAGCGAC ACCTGCTGCGCAAGGCCGGGTTGGAGCAATGGCGCCTTGCGACTACCTCC AGGAGGCGCGAGAGGAACGGGAAGATGACGGCCACCGTGCACTGGGCGAC AACACTCTCGGCAAGGGTTCTGCTGTCATGGCAAGTAGCAGCTGTGCAAC AGTGGGCCGGATCGAGGCAAGAGGAAGCGGCTGAGCAGTACCACCGCCTA GCCTGCAAAAAACGGGCGATGAAGGCGTGGGTTCTGCTGTCATGGCAAGT AGCAGCTGTGCAACAGTGGGCCGGATCGAGGCAAGAGGAAGCGGCTGAGC AGTACCACCGCCTAGCCTGCAAAAAACGGGCGATGAAGGCGTGG back to top
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