mRNA_S-dermatodea_contig1047.330.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1047.330.1
Unique NamemRNA_S-dermatodea_contig1047.330.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig1047.330.1 vs. uniprot
Match: D7FPQ1_ECTSI (CTP synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPQ1_ECTSI)

HSP 1 Score: 516 bits (1330), Expect = 1.360e-178
Identity = 254/271 (93.73%), Postives = 263/271 (97.05%), Query Frame = 1 
Query:    1 VLARFRGEEK-ECKFIIVTGGVLSGIGKGVTASSIGVLCKMMGLRPTAIKIDPYLNVDAGTMSPFEHGEVFVLDDGGETDLDLGNYERFMGVNLRNESNLTTGKIYQYVIEKERRGDYLGKTVQVVPHITDALQDWIVNVSKKPVDDSSEEPDVCIIELGGTLGDIESMPFVEALRQLQERVGYKNCCFVHVSLVPEIGSPGEQKTKPTQHSVKQMRALGLAPDFLMCRGSSPVVKGARDKLSMFCQVPPERVVSVHDVSNIYRVPLLLLE 810
            V+ARFRG+ K ECKFI+VTGGVLSGIGKGVTASSIGVLCKMMGLRPTAIKIDPYLNVDAGTMSPFEHGEVFVLDDGGETDLDLGNYERFMGVNLRNESNLTTGKIYQYVIEKERRGDYLGKTVQVVPHITDALQDWIV VSKKPVD+S +EPDVCIIELGGTLGDIESMPFVEALRQLQ+RVGYKNCCFVHVSLVP +GSPGEQKTKPTQHS+KQMRALGLAPDFLMCRG  PVV+GARDKLSMFCQVPPERVVSVHDVSNIY VPLLLLE
Sbjct:   95 VMARFRGDHKQECKFIVVTGGVLSGIGKGVTASSIGVLCKMMGLRPTAIKIDPYLNVDAGTMSPFEHGEVFVLDDGGETDLDLGNYERFMGVNLRNESNLTTGKIYQYVIEKERRGDYLGKTVQVVPHITDALQDWIVGVSKKPVDNSDQEPDVCIIELGGTLGDIESMPFVEALRQLQDRVGYKNCCFVHVSLVPSLGSPGEQKTKPTQHSIKQMRALGLAPDFLMCRGGKPVVEGARDKLSMFCQVPPERVVSVHDVSNIYHVPLLLLE 365
[Close]
BLAST of mRNA_S-dermatodea_contig1047.330.1 vs. uniprot
Match: A0A7S4DI78_HETAK (CTP synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DI78_HETAK)

HSP 1 Score: 438 bits (1126), Expect = 3.440e-148
Identity = 214/267 (80.15%), Postives = 238/267 (89.14%), Query Frame = 1 
Query:   19 GEEKE---CKFIIVTGGVLSGIGKGVTASSIGVLCKMMGLRPTAIKIDPYLNVDAGTMSPFEHGEVFVLDDGGETDLDLGNYERFMGVNLRNESNLTTGKIYQYVIEKERRGDYLGKTVQVVPHITDALQDWIVNVSKKPVDDSSEEPDVCIIELGGTLGDIESMPFVEALRQLQERVGYKNCCFVHVSLVPEIGSPGEQKTKPTQHSVKQMRALGLAPDFLMCRGSSPVVKGARDKLSMFCQVPPERVVSVHDVSNIYRVPLLLLE 810
            GE+K+    KFIIVTGGVLSGIGKGV ASS+GVL + MGLRPTAIKIDPYLNVDAGTMSPFEHGEVFVLDDGGETDLDLGNYERF+ V LR+ESNLTTGK+YQ VIE+ERRGDYLGKTVQVVPHITD +QDWI  V+  PVD     PDVC++ELGGTLGDIESMPFVEALRQLQ+RVGYKNC F+HVSLVP +G P EQKTKPTQHSVKQMR+LGLAPDFL+CRG++P+ +GAR KL MFCQVP + V+SVHDVSN+YRVPLLLLE
Sbjct:   53 GEKKQNSNTKFIIVTGGVLSGIGKGVCASSVGVLLRAMGLRPTAIKIDPYLNVDAGTMSPFEHGEVFVLDDGGETDLDLGNYERFLDVRLRSESNLTTGKVYQKVIERERRGDYLGKTVQVVPHITDEIQDWIQEVATHPVDGGEAPPDVCVVELGGTLGDIESMPFVEALRQLQDRVGYKNCAFLHVSLVPTVGRPPEQKTKPTQHSVKQMRSLGLAPDFLLCRGAAPLEEGARAKLGMFCQVPKDNVISVHDVSNLYRVPLLLLE 319
[Close]
BLAST of mRNA_S-dermatodea_contig1047.330.1 vs. uniprot
Match: A0A7S1TWX5_9STRA (CTP synthase (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TWX5_9STRA)

HSP 1 Score: 408 bits (1048), Expect = 1.950e-136
Identity = 201/268 (75.00%), Postives = 229/268 (85.45%), Query Frame = 1 
Query:   19 GEEKECK--FIIVTGGVLSGIGKGVTASSIGVLCKMMGLRPTAIKIDPYLNVDAGTMSPFEHGEVFVLDDGGETDLDLGNYERFMGVNLRNESNLTTGKIYQYVIEKERRGDYLGKTVQVVPHITDALQDWIVNVSKKPVDDSSEEPDVCIIELGGTLGDIESMPFVEALRQLQERVGYKNCCFVHVSLVPEIGS--PGEQKTKPTQHSVKQMRALGLAPDFLMCRGSSPVVKGARDKLSMFCQVPPERVVSVHDVSNIYRVPLLLLE 810
            G E  CK  FI+VTGGV+SGIGKG+TASS+GVLCKMMGLRPTA+KIDPYLN DAGTMSPFEHGEVFVLDDGGETDLDLGNYERF+GV LRN SNLTTGK+YQ VIE ERRGDYLGKTVQVVPHIT+ +   I++V+K PVD     PDVCIIELGGTLGDIESMPFVEALRQLQ RVG+KN  F+HVSLVP++GS    EQK+KPTQH +K MR+LGL+PDF+MCR S P+    + KLSMFC VP ++VVSVHDVSN+YRVP+LL +
Sbjct:   32 GSEAGCKTKFIVVTGGVISGIGKGITASSVGVLCKMMGLRPTAVKIDPYLNCDAGTMSPFEHGEVFVLDDGGETDLDLGNYERFLGVQLRNVSNLTTGKVYQTVIEAERRGDYLGKTVQVVPHITEEIVRCILDVAKSPVDGGKAPPDVCIIELGGTLGDIESMPFVEALRQLQLRVGWKNVAFMHVSLVPKVGSGPTSEQKSKPTQHGIKSMRSLGLSPDFIMCRSSEPLQSSTQRKLSMFCDVPEQQVVSVHDVSNLYRVPILLAQ 299
[Close]
BLAST of mRNA_S-dermatodea_contig1047.330.1 vs. uniprot
Match: A0A7S3V5J1_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V5J1_9STRA)

HSP 1 Score: 397 bits (1019), Expect = 3.670e-135
Identity = 195/262 (74.43%), Postives = 222/262 (84.73%), Query Frame = 1 
Query:   37 KFIIVTGGVLSGIGKGVTASSIGVLCKMMGLRPTAIKIDPYLNVDAGTMSPFEHGEVFVLDDGGETDLDLGNYERFMGVNLRNESNLTTGKIYQYVIEKERRGDYLGKTVQVVPHITDALQDWIVNVSKKPVD----DSSEEPDVCIIELGGTLGDIESMPFVEALRQLQERVGYKNCCFVHVSLVPEIGSPGEQKTKPTQHSVKQMRALGLAPDFLMCRGSSPVVKGARDKLSMFCQVPPERVVSVHDVSNIYRVPLLLLE 810
            K I+VTGGVLSGIGKGVTASSIGVL + MGLR TA+KIDPYLNVDAGTMSPFEHGEVFVLDDGGETDLDLGNYERF+ V+L  ESNL+TGKIYQ VI++ER GDYLGKTVQVVPHI+DA+Q+WI+ V+K PV        E P+VCIIELGGTLGDIESMPFVEALRQLQ +VGYKN CFVHVSLVP +GSP EQKTKPTQHSV QMR LGL PDF+ CRG  P+   A+ K++MF   P   ++S+HDVSNIYRVPL+++E
Sbjct:   58 KIIVVTGGVLSGIGKGVTASSIGVLLRAMGLRVTALKIDPYLNVDAGTMSPFEHGEVFVLDDGGETDLDLGNYERFLSVSLTKESNLSTGKIYQSVIDRERMGDYLGKTVQVVPHISDAIQEWILRVAKAPVARFGASKKETPEVCIIELGGTLGDIESMPFVEALRQLQIQVGYKNMCFVHVSLVPVLGSPPEQKTKPTQHSVAQMRQLGLNPDFIACRGKEPIEPSAKRKIAMFSSTPENAIISIHDVSNIYRVPLMMME 319
[Close]
BLAST of mRNA_S-dermatodea_contig1047.330.1 vs. uniprot
Match: A0A7J4GMV9_9ARCH (CTP synthase n=2 Tax=Archaea TaxID=2157 RepID=A0A7J4GMV9_9ARCH)

HSP 1 Score: 396 bits (1017), Expect = 4.490e-133
Identity = 191/258 (74.03%), Postives = 218/258 (84.50%), Query Frame = 1 
Query:   37 KFIIVTGGVLSGIGKGVTASSIGVLCKMMGLRPTAIKIDPYLNVDAGTMSPFEHGEVFVLDDGGETDLDLGNYERFMGVNLRNESNLTTGKIYQYVIEKERRGDYLGKTVQVVPHITDALQDWIVNVSKKPVDDSSEEPDVCIIELGGTLGDIESMPFVEALRQLQERVGYKNCCFVHVSLVPEIGSPGEQKTKPTQHSVKQMRALGLAPDFLMCRGSSPVVKGARDKLSMFCQVPPERVVSVHDVSNIYRVPLLLLE 810
            K++IV+GGVLSGIGKGVTASS+GVL K  GLRPTAIKIDPYLN DAGTMSPFEHGEVFVLDDGGE DLDLGNYERF+ V L  ++NLTTGK+Y  V+E ERRGDYLGKTVQV+PHITD +QDWI +V+ +P D S EEPDVC+IELGGT+GDIES PFVEALRQ Q RVG +NCCFVHVSLVP IG  GEQKTKPTQH+VK++R LG+ PD L+CR   P+    R+KL++FC V PE V+S HDVSNIYRVPLLL E
Sbjct:    2 KYVIVSGGVLSGIGKGVTASSLGVLLKSAGLRPTAIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDVCLTRDNNLTTGKVYAKVLEAERRGDYLGKTVQVIPHITDTVQDWIEDVAHRPADGSGEEPDVCVIELGGTVGDIESAPFVEALRQFQFRVGPENCCFVHVSLVPVIGVVGEQKTKPTQHTVKELRGLGITPDMLVCRSERPLEDDVREKLALFCHVSPEAVLSAHDVSNIYRVPLLLEE 259
[Close]
BLAST of mRNA_S-dermatodea_contig1047.330.1 vs. uniprot
Match: A0A7S3V5W4_9STRA (CTP synthase (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V5W4_9STRA)

HSP 1 Score: 397 bits (1019), Expect = 3.330e-132
Identity = 195/262 (74.43%), Postives = 222/262 (84.73%), Query Frame = 1 
Query:   37 KFIIVTGGVLSGIGKGVTASSIGVLCKMMGLRPTAIKIDPYLNVDAGTMSPFEHGEVFVLDDGGETDLDLGNYERFMGVNLRNESNLTTGKIYQYVIEKERRGDYLGKTVQVVPHITDALQDWIVNVSKKPVD----DSSEEPDVCIIELGGTLGDIESMPFVEALRQLQERVGYKNCCFVHVSLVPEIGSPGEQKTKPTQHSVKQMRALGLAPDFLMCRGSSPVVKGARDKLSMFCQVPPERVVSVHDVSNIYRVPLLLLE 810
            K I+VTGGVLSGIGKGVTASSIGVL + MGLR TA+KIDPYLNVDAGTMSPFEHGEVFVLDDGGETDLDLGNYERF+ V+L  ESNL+TGKIYQ VI++ER GDYLGKTVQVVPHI+DA+Q+WI+ V+K PV        E P+VCIIELGGTLGDIESMPFVEALRQLQ +VGYKN CFVHVSLVP +GSP EQKTKPTQHSV QMR LGL PDF+ CRG  P+   A+ K++MF   P   ++S+HDVSNIYRVPL+++E
Sbjct:   58 KIIVVTGGVLSGIGKGVTASSIGVLLRAMGLRVTALKIDPYLNVDAGTMSPFEHGEVFVLDDGGETDLDLGNYERFLSVSLTKESNLSTGKIYQSVIDRERMGDYLGKTVQVVPHISDAIQEWILRVAKAPVARFGASKKETPEVCIIELGGTLGDIESMPFVEALRQLQIQVGYKNMCFVHVSLVPVLGSPPEQKTKPTQHSVAQMRQLGLNPDFIACRGKEPIEPSAKRKIAMFSSTPENAIISIHDVSNIYRVPLMMME 319
[Close]
BLAST of mRNA_S-dermatodea_contig1047.330.1 vs. uniprot
Match: A0A2E6HIS7_9EURY (CTP synthase n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E6HIS7_9EURY)

HSP 1 Score: 393 bits (1010), Expect = 4.400e-132
Identity = 189/258 (73.26%), Postives = 218/258 (84.50%), Query Frame = 1 
Query:   37 KFIIVTGGVLSGIGKGVTASSIGVLCKMMGLRPTAIKIDPYLNVDAGTMSPFEHGEVFVLDDGGETDLDLGNYERFMGVNLRNESNLTTGKIYQYVIEKERRGDYLGKTVQVVPHITDALQDWIVNVSKKPVDDSSEEPDVCIIELGGTLGDIESMPFVEALRQLQERVGYKNCCFVHVSLVPEIGSPGEQKTKPTQHSVKQMRALGLAPDFLMCRGSSPVVKGARDKLSMFCQVPPERVVSVHDVSNIYRVPLLLLE 810
            K++IV+GGVLSG+GKGVTASS+GVL K  GLRPTAIKIDPYLN DAGTMSPFEHGEVFVLDDGGE DLDLGNYERF+ VNL  ++NLTTGK+Y  VIE ERRGDYLGKTVQV+PHITDA+QDWI  V+ +P DDS  +PD+C+IELGGT+GDIES PF+EALRQ Q RVG +N CFVHVSLVP IG  GEQKTKPTQH+VK++R+LG+ PD L+CR   P+    RDKL++FC V  E V+S HDVSNIYRVPLLL E
Sbjct:    2 KYVIVSGGVLSGLGKGVTASSLGVLLKSAGLRPTAIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDVNLTRDNNLTTGKVYSKVIEAERRGDYLGKTVQVIPHITDAVQDWIEEVAARPSDDSGAKPDICVIELGGTVGDIESAPFIEALRQFQFRVGPENVCFVHVSLVPVIGVVGEQKTKPTQHTVKELRSLGITPDMLVCRSERPLEDDVRDKLALFCHVSSEAVLSAHDVSNIYRVPLLLEE 259
[Close]
BLAST of mRNA_S-dermatodea_contig1047.330.1 vs. uniprot
Match: A0A7S4RRR0_9STRA (CTP synthase n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RRR0_9STRA)

HSP 1 Score: 396 bits (1018), Expect = 3.150e-131
Identity = 197/274 (71.90%), Postives = 227/274 (82.85%), Query Frame = 1 
Query:   37 KFIIVTGGVLSGIGKGVTASSIGVLCKMMGLRPTAIKIDPYLNVDAGTMSPFEHGEVFVLDDGGETDLDLGNYERFMGVNLRNESNLTTGKIYQYVIEKERRGDYLGKTVQVVPHITDALQDWIVNVSKKPV--------------DDSS--EEPDVCIIELGGTLGDIESMPFVEALRQLQERVGYKNCCFVHVSLVPEIGSPGEQKTKPTQHSVKQMRALGLAPDFLMCRGSSPVVKGARDKLSMFCQVPPERVVSVHDVSNIYRVPLLLLE 810
            K ++VTGGVLSGIGKGVTASSIGVL + MGLR TA+KIDPYLNVDAGTMSPFEHGEVFVLDDGGETDLDLGNYERF+ V+L  +SNL+TGKIYQ VIEKER GDYLGKTVQVVPHI+DA+Q+W++ V+K PV              DD +  E P+VCIIELGGTLGDIESMPFVEALRQLQ+ +GYKN CF+HVSL+P +GSP EQKTKPTQHSVKQM  LGL PDFL CRG  P+  GAR KLS+F  V  + ++S+HDVSNIYRVPL+++E
Sbjct:  105 KIVVVTGGVLSGIGKGVTASSIGVLFRSMGLRVTALKIDPYLNVDAGTMSPFEHGEVFVLDDGGETDLDLGNYERFLSVSLTKDSNLSTGKIYQSVIEKERVGDYLGKTVQVVPHISDAIQEWVLRVAKTPVSRFSTLGSHHSTKNDDITQPEAPEVCIIELGGTLGDIESMPFVEALRQLQDHLGYKNMCFIHVSLIPVLGSPSEQKTKPTQHSVKQMMQLGLRPDFLCCRGKEPLESGARSKLSIFTTVAEKAIISIHDVSNIYRVPLMMIE 378
[Close]
BLAST of mRNA_S-dermatodea_contig1047.330.1 vs. uniprot
Match: A0A2D6DM20_9EURY (CTP synthetase (Fragment) n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2D6DM20_9EURY)

HSP 1 Score: 380 bits (977), Expect = 3.380e-130
Identity = 180/256 (70.31%), Postives = 214/256 (83.59%), Query Frame = 1 
Query:   37 KFIIVTGGVLSGIGKGVTASSIGVLCKMMGLRPTAIKIDPYLNVDAGTMSPFEHGEVFVLDDGGETDLDLGNYERFMGVNLRNESNLTTGKIYQYVIEKERRGDYLGKTVQVVPHITDALQDWIVNVSKKPVDDSSEEPDVCIIELGGTLGDIESMPFVEALRQLQERVGYKNCCFVHVSLVPEIGSPGEQKTKPTQHSVKQMRALGLAPDFLMCRGSSPVVKGARDKLSMFCQVPPERVVSVHDVSNIYRVPLLL 804
            K+++VTGGVLSG+GKGVTASSIGVL K  GLR TA+KIDPYLN DAGTMSPFEHGEVFVLDDGGE DLDLGNYERF+ V L  ++N+TTGK+Y  VI+KERRGDYLGKTVQV+PHIT+ +QDWI  V+  P D + +EPD C+IELGGT+GDIES PFVEALRQ Q RVG +N CFVHVSL+P +G  GEQKTKPTQH+VK++R LG+ P  L+CR  SP++   R+K+S FC VPPE VVS HDVSNIY+VP++L
Sbjct:    2 KYVVVTGGVLSGLGKGVTASSIGVLLKSAGLRVTAVKIDPYLNEDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDVCLTRDNNITTGKVYNKVIQKERRGDYLGKTVQVIPHITNEIQDWIERVAHTPSDGNGKEPDACVIELGGTVGDIESAPFVEALRQFQFRVGQENVCFVHVSLIPVMGPVGEQKTKPTQHTVKELRGLGINPHMLVCRSKSPLIDETRNKISAFCHVPPEAVVSAHDVSNIYQVPIML 257
[Close]
BLAST of mRNA_S-dermatodea_contig1047.330.1 vs. uniprot
Match: A0A1E7EVS6_9STRA (CTP synthase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EVS6_9STRA)

HSP 1 Score: 390 bits (1001), Expect = 6.940e-130
Identity = 193/264 (73.11%), Postives = 223/264 (84.47%), Query Frame = 1 
Query:   37 KFIIVTGGVLSGIGKGVTASSIGVLCKMMGLRPTAIKIDPYLNVDAGTMSPFEHGEVFVLDDGGETDLDLGNYERFMGVNLRNESNLTTGKIYQYVIEKERRGDYLGKTVQVVPHITDALQDWIVNVSKKPV------DDSSEEPDVCIIELGGTLGDIESMPFVEALRQLQERVGYKNCCFVHVSLVPEIGSPGEQKTKPTQHSVKQMRALGLAPDFLMCRGSSPVVKGARDKLSMFCQVPPERVVSVHDVSNIYRVPLLLLE 810
            K ++VTGGV+SGIGKGVTASSIGVL + MGLR TA+KIDPYLNVDAGTMSPFEHGEVFVL+DGGE DLDLGNYERF+ V L   SNL+TGKIYQ VIE+ER GDYLGKTVQVVPH++DA+Q+W++NVSK+PV       D+   P+VCI+ELGGTLGDIESMPFVEALRQLQE +GYKN CFVHVSLVPEI   GEQKTKPTQHS+K M  LGL PDFL  RG SP+  GARDKLS+F  VP   ++S+HDVSNIYRVPL++++
Sbjct:   26 KVVVVTGGVVSGIGKGVTASSIGVLFRAMGLRVTALKIDPYLNVDAGTMSPFEHGEVFVLNDGGECDLDLGNYERFLSVFLTKASNLSTGKIYQQVIERERVGDYLGKTVQVVPHVSDAIQEWVLNVSKEPVAQSKKIKDADSPPEVCIVELGGTLGDIESMPFVEALRQLQENIGYKNMCFVHVSLVPEIN--GEQKTKPTQHSIKTMMQLGLRPDFLCVRGGSPIEDGARDKLSIFTGVPKSAIISLHDVSNIYRVPLMMMD 287
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1047.330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPQ1_ECTSI1.360e-17893.73CTP synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A7S4DI78_HETAK3.440e-14880.15CTP synthase n=1 Tax=Heterosigma akashiwo TaxID=28... [more]
A0A7S1TWX5_9STRA1.950e-13675.00CTP synthase (Fragment) n=1 Tax=Phaeomonas parva T... [more]
A0A7S3V5J1_9STRA3.670e-13574.43Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7J4GMV9_9ARCH4.490e-13374.03CTP synthase n=2 Tax=Archaea TaxID=2157 RepID=A0A7... [more]
A0A7S3V5W4_9STRA3.330e-13274.43CTP synthase (Fragment) n=1 Tax=Chaetoceros debili... [more]
A0A2E6HIS7_9EURY4.400e-13273.26CTP synthase n=1 Tax=Euryarchaeota archaeon TaxID=... [more]
A0A7S4RRR0_9STRA3.150e-13171.90CTP synthase n=4 Tax=Ditylum brightwellii TaxID=49... [more]
A0A2D6DM20_9EURY3.380e-13070.31CTP synthetase (Fragment) n=1 Tax=Euryarchaeota ar... [more]
A0A1E7EVS6_9STRA6.940e-13073.11CTP synthase n=1 Tax=Fragilariopsis cylindrus CCMP... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1047contigS-dermatodea_contig1047:3891..12067 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score520.4
Seed ortholog evalue5e-145
Seed eggNOG ortholog2880.D7FPQ1
KEGG rclassRC00010,RC00074
KEGG koko:K01937
KEGG ReactionR00571,R00573
KEGG Pathwayko00240,ko01100,map00240,map01100
KEGG ModuleM00052
GOsGO:0001775,GO:0002376,GO:0003674,GO:0003824,GO:0003883,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006213,GO:0006220,GO:0006221,GO:0006241,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009163,GO:0009165,GO:0009199,GO:0009201,GO:0009208,GO:0009209,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0015949,GO:0016874,GO:0016879,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0032943,GO:0034404,GO:0034641,GO:0034654,GO:0042098,GO:0042100,GO:0042110,GO:0042113,GO:0042221,GO:0042455,GO:0042493,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045321,GO:0046036,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0046649,GO:0046651,GO:0050896,GO:0055086,GO:0070661,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
EggNOG free text desc.'de novo' CTP biosynthetic process
EggNOG OGsCOG0504@1,KOG2387@2759
EC6.3.4.2
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCTP synthase
Ec32 orthologEc-20_000910.1
Exons9
Model size811
Cds size810
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924158.4797468-CDS-S-dermatodea_contig1047:3891..39631622924158.4797468-CDS-S-dermatodea_contig1047:3891..3963Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1047 3892..3963 -
1694079057.6077867-CDS-S-dermatodea_contig1047:3891..39631694079057.6077867-CDS-S-dermatodea_contig1047:3891..3963Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1047 3892..3963 -
1622924158.4899023-CDS-S-dermatodea_contig1047:5326..54091622924158.4899023-CDS-S-dermatodea_contig1047:5326..5409Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1047 5327..5409 -
1694079057.6248941-CDS-S-dermatodea_contig1047:5326..54091694079057.6248941-CDS-S-dermatodea_contig1047:5326..5409Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1047 5327..5409 -
1622924158.500192-CDS-S-dermatodea_contig1047:5835..59511622924158.500192-CDS-S-dermatodea_contig1047:5835..5951Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1047 5836..5951 -
1694079057.635771-CDS-S-dermatodea_contig1047:5835..59511694079057.635771-CDS-S-dermatodea_contig1047:5835..5951Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1047 5836..5951 -
1622924158.510249-CDS-S-dermatodea_contig1047:6598..66871622924158.510249-CDS-S-dermatodea_contig1047:6598..6687Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1047 6599..6687 -
1694079057.6454012-CDS-S-dermatodea_contig1047:6598..66871694079057.6454012-CDS-S-dermatodea_contig1047:6598..6687Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1047 6599..6687 -
1622924158.5203578-CDS-S-dermatodea_contig1047:7391..74721622924158.5203578-CDS-S-dermatodea_contig1047:7391..7472Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1047 7392..7472 -
1694079057.6555598-CDS-S-dermatodea_contig1047:7391..74721694079057.6555598-CDS-S-dermatodea_contig1047:7391..7472Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1047 7392..7472 -
1622924158.5297425-CDS-S-dermatodea_contig1047:8370..84341622924158.5297425-CDS-S-dermatodea_contig1047:8370..8434Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1047 8371..8434 -
1694079057.6648984-CDS-S-dermatodea_contig1047:8370..84341694079057.6648984-CDS-S-dermatodea_contig1047:8370..8434Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1047 8371..8434 -
1622924158.5391555-CDS-S-dermatodea_contig1047:8977..90781622924158.5391555-CDS-S-dermatodea_contig1047:8977..9078Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1047 8978..9078 -
1694079057.6771097-CDS-S-dermatodea_contig1047:8977..90781694079057.6771097-CDS-S-dermatodea_contig1047:8977..9078Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1047 8978..9078 -
1622924158.5476573-CDS-S-dermatodea_contig1047:10212..103611622924158.5476573-CDS-S-dermatodea_contig1047:10212..10361Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1047 10213..10361 -
1694079057.693249-CDS-S-dermatodea_contig1047:10212..103611694079057.693249-CDS-S-dermatodea_contig1047:10212..10361Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1047 10213..10361 -
1622924158.5563912-CDS-S-dermatodea_contig1047:12012..120671622924158.5563912-CDS-S-dermatodea_contig1047:12012..12067Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1047 12013..12067 -
1694079057.7074459-CDS-S-dermatodea_contig1047:12012..120671694079057.7074459-CDS-S-dermatodea_contig1047:12012..12067Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1047 12013..12067 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1047.330.1prot_S-dermatodea_contig1047.330.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1047 3892..12067 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1047.330.1

>prot_S-dermatodea_contig1047.330.1 ID=prot_S-dermatodea_contig1047.330.1|Name=mRNA_S-dermatodea_contig1047.330.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=270bp
VLARFRGEEKECKFIIVTGGVLSGIGKGVTASSIGVLCKMMGLRPTAIKI
DPYLNVDAGTMSPFEHGEVFVLDDGGETDLDLGNYERFMGVNLRNESNLT
TGKIYQYVIEKERRGDYLGKTVQVVPHITDALQDWIVNVSKKPVDDSSEE
PDVCIIELGGTLGDIESMPFVEALRQLQERVGYKNCCFVHVSLVPEIGSP
GEQKTKPTQHSVKQMRALGLAPDFLMCRGSSPVVKGARDKLSMFCQVPPE
RVVSVHDVSNIYRVPLLLLE
back to top

mRNA from alignment at S-dermatodea_contig1047:3891..12067-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1047.330.1 ID=mRNA_S-dermatodea_contig1047.330.1|Name=mRNA_S-dermatodea_contig1047.330.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=8177bp|location=Sequence derived from alignment at S-dermatodea_contig1047:3891..12067- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGCTGGCCAGGTTTAGGGGCGAGGAGAAGGAGTGCAAGTTCATCATCGT
CACGGGTAAGACATCGGCGTTGTCTGGAATGGCGAACCCTTTTTTCAATG
ACGTGTACAAACGACCCATCGCGCAACACAGTATTTTAAAGGATCCAGTG
CTTCTTCGTGGAAAGCCTTACGATCACTCACACTGTTTTGTTTTCGAGTT
TCTCTAATATTTGATTATTCTAAGTTATGATGTTGTTCATTTTAATGAAA
CCTCGACGTCTAATGATTTAACCACACCCATTTCATGTTGTTGAAACAAG
TCCTTGGCCGGTTGCGGCTGCTCTAGGTGTGGGACCTGCGATTCTTGCGT
TCGCTTATTCGTGCCACCCGTTTCTATCAATTTGGTTGGTCACTTCTTTC
AATGGCCGCTCGGTCTATTAAGAGTTGATTGGTGGGCGTCATCTGCAGAG
CGCCCGCCAATAGACCTAGTTTATTATGAGCTAGGACGGAGCCGGGTTGA
AATGTCTTCGCACAGCGCTGTTTTGGTTCCTGTTTTTGTATACCTTATCG
GGGCAGCACGTCATTGCAACGCGGGGGGATGCTGATCACGAGAACGATCA
GGGACGCGAAGGCTCCGCTGCTACCTGCAGTAGTGGTTATTGCCTCAATG
CTTCAGTCCTGCCCGCAGACTGTCCTCTGTGCTTGCGAGCGCCTCCACTA
CTGGCGCCTCAGTTGTTCTTGATGATTCCCCAGGCGCATACGTTCTGCGG
GACATGGTCGTGCTTGGAAGTATTGTTTTCCGATGGGCTTGGTCGTGGTG
GATGATTTCTCGATTGCATTCAACTAAATACGGGTTAGCGTGATCCATGC
TAGGCATTGAGGCAAGAGATCGCGCCGCGCTCTCCGGGGCATCCACCTGT
TTTCATGTGGGGCAGCTCGAGTTGTCGCACCAGCTCGAATAGTGGGAAAC
GATCAGTTGCGGTGCCGAGGGCTGAATTCCTCAAGCGAATATCGAGGACG
CCATTTGATTTTGATGTCTCGACTTGATGGTTCGGTGGAAGTTCCAAAGC
TATATGGCAGCCGACGAGGACGCCTGAGTCAAGCATGCATAGGTTAAACT
TGGTCGTAATTGCCTAGAATAGCGCGATACGTACGTTTGATGTCCAGTGA
CGCCGTGACTCGCACGACTCCTCATTGCAAGATGCATCCTCCTGCATGCG
TCCCACTCTCATGACATACACCGGGCTTGTCTGCCCCCTTAGTGTGGATT
CCGGGCAGCCATCCTGTGGATGTTTTAGCTAGGCGGGCTACCAATATATG
TGAAGAGTGCGCATTTTTTCCATGGCATGCAGGCTTTGGGGGATCTTCGG
GCCACTTTTGCTTCATTTTTTCAGGATGGCCGCACAATGCTCTCACAATT
GCGCTTCGACCTCTCTAAGCGTTCCTATGTCATGCGGTACTCCGCAAACG
GCTACAGTATTGCATGATGGCTGTCGCAAACACACGCGTCAACTCGCACT
ACGGTCAAACAATCTGCCAGCCGCGATACTGCCAATCCATGCGCGATAAC
TAACGAAGGTAGATACTGAGGGATCATGGAATTGATCGTTGCGGCTACAG
CCGGAATCTTAGACAGGTCTCCACTCTCTCTGAAGTGTGGCTTTTCGTCT
CGTTTCGATTTTACCCCTTGTCGCGATGCGGCCGGCCCTCTGCTGCGTTG
GCTCAGGCGGAGTGCTGAGTGGCATCGGCAAGGGAGTGACCGCGTCCAGC
ATTGGTGTGCTGTGCAAAATGATGGGGCTCCGACCGACGGCCATCAAGAT
TGACCCCTACCTCAACGTCGACGCCGGCACCATGTCCCCCTTCGAGCACG
GCGAGGTCAGCCCTAAGAGCTTTTATGGCTCTCTTCAAACTGTTGTCGGC
GCACCTCCTGCACGTTTTGGTGTGTGTTGGTGCTTAGTTTGATCTTGCCG
GGTGAAACCATGGTGCTTGGAGAGCGGTCCGCATTTCGTTTTGTATTCAC
ATGAGGCAAGTCTGCGATTTTAGACGTGCTACCTCTGCGGTTCTGCTGAT
ATCGGATTCCGTGGCCTCCCACGAGGCGCAAAATGGAAATAGCAAAAGCC
AGCGGGTCACGCGTGGTGAGATCCACAGGGCGACCCAACAAAGCAAATAT
CCCGGAGAGATTCATGATTTTCGAGGGTTAAGGGCCTGGTACTGTAGTTG
ATGAACAAGTACATGACCATGCTGGATCCCTTGTACTCTATATAGTGTCT
CGAGAGAGGTGTGACGGCCCCTATGTTAGGTGGCAGTGGGCCGATGGTGC
TTTGGAGGCAACCCCTTTGGGGTCGTGTGCCGCACCGCTCGAACAGTCCA
CTGACGAGTGTGATTGCTCATACTGCCGGCGAACATCACGTGTATGTTGA
GATGGCGCTGTATTCCCATCAGAGACAGCATTCCTATTATAGTAGGCACT
GGCAACTCTCCGTCACCCTCTGGATGCTTGCCCTGCAGGGTTTGCCAAGC
GGCCGAATCCGCTTGTCACTCAGGATTTGCTGCTCCCAACTAATCTTACG
CTGTTCCACTACTATAAAACGTGTTCGTTCTGCACAAGCGCGGTAGCACT
GCATGCCGTTGGTCTTTGTTTTACTGCGGCGTTCGAGAGGTATTCAGTAG
AGTACCTAATGCAACAGATGTTCGGTATACTACTTGTACTATTGCGGTGA
AGCAAGATTAACAGACCCAAATATTGAGTTGTTAACAACCACCAATGCCC
CAAGAGTATTTTTTAATTTTCTAGTAATTTTTTCTGGAACAAACGGACCT
TGGCCGGAAGATAGTAGATGCTATACTTATAGATCTCCAGAGACTGACGT
TTCAGAAGCTGGTTTACTAGACCTCTATTGAGGAAGGCTGTATTGTACAT
TTTGTCCTCTTAACTGTATTCCCCGGTAATAGTTATTCTGTCTGACGCGC
CTCTTCTCTACTCCGTCCTACCCCATGGAATGCCTGTAGGTGTTCGTTCT
TGACGACGGAGGGGAGACGGATCTCGACCTCGGCAACTACGAGCGTTTCA
TGGGCGTCAACCTCAGGAACGAGTCCAACCTAACCACTGGGTGAGTTCTT
CCCACGCCGTCCCGGCGACAGCTACGCCGATTATCACGGTCGCCGTGTCC
CACGCCGTCCCGGCGACAGCTACGCCGATTATCACGGTCGCCGTGTCCTC
TGTTATTCGAGAGATGACCACCCTAATGCGGTTTTAGTGTAATACTGTTG
TGGCTTCCGTTGCCTGATCGGTTAAGGCCTAGTCGGTTCGGCACGGGTTC
CGTAGGAGTGTCTCCCGTTGTACGGTGGAGGCGTGGGCGTAAAAAATGAC
CTAGGGGCCAGGATTAGGCGGAGGCTGGGTGGTTGGTGGTATCATCTCTG
CCGGGCCTGCTAAGAGCAGCACCCCTGCTTGGAGGGGAATGCTGTGTACA
GTGGTATGCGGTCGATGGCTGCGCCCATAACGGTGGCGGTAGCCAATCGA
CAATAAGATCAAGGTGCTCGAAAAATTACAGACTGTGTTCCGGTGTGTGT
GTTTTGTGTGTGGCGCTTGTGCTCGCATGCAATGGTCACGAACGTCCCGT
GCTTGCGGCGGCTTTTCGTTCTTGGCTTTGCAGGAAGATCTACCAGTATG
TAATCGAGAAGGAAAGGAGGGGAGACTACCTCGGCAAGACCGTGCAGGTA
TGAACCGCTCTCAGATGCTGAGGTGCTACAATCGCTCACAGTGTTCTTGT
TGTTAATTTTCTTCCTTTGTTTCTCCTGGGCTACCCTTTTCACACCTCGC
GCTCGAAATGTATGGTGCGTTTTTTTATGGGTCATTTTTCTAAAGGTTGC
CAGACTTGGTTTCGACATTGTTGGTGTGATGAGCCCAAGGTTTCTGTAGG
AGAGGAGACTGTTTTTTGTTTTTGTTTATTTAGCAGACCCAAGTTCCGAT
ATATGTACCCTCTGATTCCCAGCGTTTGTTTGTGTTGCTGTATCTTACCG
TGTGTACCATGCAGGTATATCCCGTACGATTTGTATTTCTCGAGTTCTCA
TATGACCACGAACGGGATCGGTTGGCGGGCCGGTCGGTTGTAAGTGCGGT
AATCAATCAATCACTAAATCAATCCATCAATAATAAATCGCTTGATTTGA
AGATCAATCATAGGATGTCGGTAAATGGCACTTCTGCGCTGCGACGGTAG
AACGTTTTCCTGACTTTGGAGGCGTTTTGCACGCAAAGACATAGGAAACG
CTGGGATTGGCCGAACACGTGTGGTGTTTGACTCCTTGAGGGATCACAAA
GCATTCACATTTGCATGGTATGGTTTTTCGATCGATACCAGAACCACGGA
ATTTGTCGCGCCTCCCGCGACCTTTTTGGTCGTGGAGCGTGCTGAATTTG
CGTTGCGACCACGGGGTGGGGTAGCTGTGCGGCATAAGCATGTGGGCGTT
AGCGGGTTGGTCTCTCCAATTCACAAGGCTGTACGGCTGTTCACGAGACT
CGCGCGACTACAATACAATCAACTCAAAAGTGGCCCCGTCGCCTTGTACT
GACGATCGCCCTATACATGTTGTGTGCGACGATCTTGTCTTACAGGTGGT
ACCACACATCACCGATGCGCTTCAGGACTGGATCGTGAACGTCAGCAAGA
AGCCCGTCGACGATTCCAGCGAAGAGGTGCTGTTCGATCTGATAATATGT
GTTTTTTTTAAACGTTATTTCAAGCGGTACTGTAGTCCGAAGTTGAGCGA
GACTGCTGTTGCGCGACATAGATGGTCAGCTACTTAAAGGTCATCAGGAT
CGGTGCAGTTGCAGGACGGTGCGCACTTAGACGATAGAAGGAGCAAGAAC
TCCACCCGAAACGGCGTTGGGTATGTCGTATTGGCGTGAACGACAGGCTT
TATCGGGCTAACACACGCGCCCTGACGACACACAAGCGTTAAATAAACAC
GCAACAGCACGTGTTGCTTTGCGACGACTGTCGGCTACAGCTGTGTCAGA
AACAACCTGGCCTGTGGCGCTAGCAATGCGTTAAATGGTTGCTCGGACGA
TCTCCGCCGTGCCCTGTCGGCCATCCCTTTTCTCCTCGGCTTTGTACTCC
GGGTAGGGCAGTCTGACATCCTCCAGTTGATGACCGTTCCGGGCTGAAAT
GTGACGGGGCGGATGGTTGAAAACATCTCCTTGAAGCACCAAACCCGCCC
GGGAAGACGAGCCGACCACTAAAAAACAAAGGATCGGATGCCTGTCGGCA
GCACTTTTGCCTAAGGCAGTGTTTCTGACTGCCTTGGCCGTAAACGTACC
AGAGTAAACTGATTGTGTTACACGTGACTGAGCTGCCCGTTTTGGATGCC
CCTCGTGACGTGTGCTGTCACCCTGTGCAGCCGGACGTTTGCATCATCGA
GCTGGGGGGCACTCTTGGAGACATCGAGAGCATGCCCTTCGTCGAGGCCT
TGAGGCAGCTGCAGGAGAGGTGAGGGAGCTTGATGAGATTTCAAGCCGTT
GTGTCTGTCTCCTACGGGTAGCCCTGTCGGAATCAGCCTTGTAGTTTCTG
TTCGGCCGCGGAAAAGGGAGAGGTTTTGGGGATTAATCGATTGATTGATC
GATGGATGGATTGATTTGATTGATTGATTGGTGTGATTGATTGATTGATT
GATTGGTGTGATTGATTGATTGATTGATTGATTGGTTGGTTAGTTGGTTG
ATTTGATAGTTTGATTGATTTGATTGATTGAGTGCTTTTATTGATTGGTC
GATTTTATGGATTGATTGATTTGGCTGATTTATCGACTTGATTGATTGAT
TGACTTGATTGAATGTCAAACATATCACACATACAACCGACCGGTCCACC
AGTGGTTGCTAATCCCGCTCTTGGTGGGAATAGCAACGCCGATGAAATCG
GCAACCCACGGGGAATGCTGAAGCCGCTGCGGAATTAAACACTTGATGGT
GTTTACCGACGGGAGGCGGAGGAAATGTTTATTTACCGCGGGCGGAATCT
CGTTTCAAAGTGATAAATCGTCATTGTGTTTCCCCGAAAAACAGTCAAGT
CGTGAATCAGTCCGGTAGACTAATTTGGTCGCGTCTGACCTGGCCTGGAC
CTTGCGTGCGCGACAGGGTGGGCTACAAGAATTGCTGTTTTGTGCACGTG
TCCCTCGTGCCTGAGATCGGCTCTCCTGGGGAGCAGAAGACGAAACCCAC
CCAGCACTCCGTCAAGCAGATGCGGGCTCTCGGTGAGGGAGGGCTTCGTG
GGACGCGTGCGTACGTGGTATCTTGCCTTCTTGGCGACAGGTTACGATTT
GGATGGAAACCCGTATGCATGCGTTTGTTTGATGTTCCCCTTTTTCACAT
GCATTGGCGTGCGCAACCCCGAACCCGAACCCCATCGCTCGGAGGGATGG
ATGCTGGCACGCTTATTTTTATGCGTAGAGTCGTTGCTTGCTGAGAGGCG
AATGTCAGCATCCGTCCACTTCAAGCCTCTCCCGCAAATTTACCACCACA
GCATAGCACGAGGCCATCGTTAGTTTGGGTCAACAGACGTAGTGATGATG
GACCGGCTTACCCCAATACCGTTCTCAGCCTCCGCTACCACTTTCGTGTA
CGCGAAGATACCACACACTAATCGTTGCCGCCTCGTGCGTGGCCATGTCA
CTACATAGGTCTGGCACCGGACTTTCTCATGTGCCGAGGGAGCAGTCCGG
TGGTGAAAGGGGCTCGGGATAAGCTGTCCATGTTTTGCCAGGTACAGTGC
GCGTCACTGCCTGCCTGGAAACAAGTGTCTGTGTGTTATCTTCGTCTGAG
ATTCGTCTGCTCTTTAGGGTACGGTTGGTGTGCTGCTCTGCTGGCCGTGG
ACGCGTCTCTGTAAGCGACCGCCATAAGGTATCAGGCCAGTGTTGGTGAT
GGCAAGGATACTATCGATGTTAGATGTTGCGGCATGATTGCCTGCTGCTT
GGCAATATTATGCGAGGCAATTACGCGGCACTCGCTGGGCTGTAGGTGGC
CTGTCAACTGAGATGAGGCCCACTACCTTGGCCCTGGGGTTCGAGTTGTC
GAGCAATCAACGCGGTTCGCAGCTTCGTTCCTCATAAGCTTTCTAAGAGT
ACCATGTTAACGTTAGTGGTTGCGGTGTGTGCGGTGCACGTGAATGCTCC
AGGCAACGGTGTGTGCGCCGTGAAAGACTCCCTACAAGTAACCATGCTGC
GCGAGGTTTTCGTGTTACAGAACACGAAACAGTTGTGGTTTTTTCCGCTC
GATATTTTCCTCGTGTGGCATGACCCGAGCGGAACTCTAGTAAGCCAATC
AGTAGAAAAAGCCGAAGTCAACCCAAAAATAATGTGAAGCCATCTAGGAT
GTGGTGGCTGTTTACACCACTGCTGCCACCCAAGAGTGATTCGGTACCGG
GTGGTTACCAAGGGCTTGCAAGGAGGAGGCCTGTAGTAGGGTTGTGCTTG
TGTTGGAGTGCCAATCTAAGGGTACTATTGCGGCGGCTTCCTCCACACTC
TTTGTTGTGGCCACGTTGTTGGTGCTGACATTGTAGCAGGCGACGCCCCA
TGATGTTCCTGTCGATGAGGATGGTGGTGATCATGACGGTGATGATCATC
AAAAGAGAACTGTGGAGCATAGTTAATATACAAATTTTGATTTGTTGATA
AACCAGTATTGGCCGCGAGCGTCTTCTTCGGAAAGTTACGATTTTTTGTC
TAGAAGACAGTACCTTAGTGTAGTGTATGTAATGATTGTGATATAAACGT
ATTGATGAAATGCTTGTAATGTAACGTATATGCTGTAGTGTAATGTACTG
TAGTGAAATTGGCCGGAAGACTATGTCTGCTTTAGAGGTCTAAGGTCAGG
CTCACTTTTTCGGGTGTCGGTTTGTTGTTGAGGAATACATTTCATAGAGT
TTTGGTTACAATAACTCTGAGTTCCTCTGTAACATTTTTGCTTGTTTTTG
ATTGCTACGGTAACGTTGTGTTTTAGTGTAATGGTTGTCCCTGCTGCTCG
TAATGGCGATTATCATACTATGCTTCTCTTGCTGTTGATGGCGATGACCA
TTGTATTGATAATGTGGCCATCGTTGTTGCCGTTGTTCGCTTCCGTTGAC
TCAGGTCCCTCCGGAACGAGTAGTATCGGTGCACGATGTCTCTAACATCT
ACCGCGTCCCTCTGCTGCTGCTGGAGC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig1047:3891..12067-

>mRNA_S-dermatodea_contig1047.330.1 ID=mRNA_S-dermatodea_contig1047.330.1|Name=mRNA_S-dermatodea_contig1047.330.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1620bp|location=Sequence derived from alignment at S-dermatodea_contig1047:3891..12067- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGCTGGCCAGGTTTAGGGGCGAGGAGAAGGAGTGCAAGTTCATCATCGT
CACGGGTGCTGGCCAGGTTTAGGGGCGAGGAGAAGGAGTGCAAGTTCATC
ATCGTCACGGGCGGAGTGCTGAGTGGCATCGGCAAGGGAGTGACCGCGTC
CAGCATTGGTGTGCTGTGCAAAATGATGGGGCTCCGACCGACGGCCATCA
AGATTGACCCCTACCTCAACGTCGACGCCGGCACCATGTCCCCCTTCGAG
CACGGCGAGGCGGAGTGCTGAGTGGCATCGGCAAGGGAGTGACCGCGTCC
AGCATTGGTGTGCTGTGCAAAATGATGGGGCTCCGACCGACGGCCATCAA
GATTGACCCCTACCTCAACGTCGACGCCGGCACCATGTCCCCCTTCGAGC
ACGGCGAGGTGTTCGTTCTTGACGACGGAGGGGAGACGGATCTCGACCTC
GGCAACTACGAGCGTTTCATGGGCGTCAACCTCAGGAACGAGTCCAACCT
AACCACTGGGTGTTCGTTCTTGACGACGGAGGGGAGACGGATCTCGACCT
CGGCAACTACGAGCGTTTCATGGGCGTCAACCTCAGGAACGAGTCCAACC
TAACCACTGGGAAGATCTACCAGTATGTAATCGAGAAGGAAAGGAGGGGA
GACTACCTCGGCAAGACCGTGCAGGAAGATCTACCAGTATGTAATCGAGA
AGGAAAGGAGGGGAGACTACCTCGGCAAGACCGTGCAGGTGGTACCACAC
ATCACCGATGCGCTTCAGGACTGGATCGTGAACGTCAGCAAGAAGCCCGT
CGACGATTCCAGCGAAGAGGTGGTACCACACATCACCGATGCGCTTCAGG
ACTGGATCGTGAACGTCAGCAAGAAGCCCGTCGACGATTCCAGCGAAGAG
CCGGACGTTTGCATCATCGAGCTGGGGGGCACTCTTGGAGACATCGAGAG
CATGCCCTTCGTCGAGGCCTTGAGGCAGCTGCAGGAGAGCCGGACGTTTG
CATCATCGAGCTGGGGGGCACTCTTGGAGACATCGAGAGCATGCCCTTCG
TCGAGGCCTTGAGGCAGCTGCAGGAGAGGGTGGGCTACAAGAATTGCTGT
TTTGTGCACGTGTCCCTCGTGCCTGAGATCGGCTCTCCTGGGGAGCAGAA
GACGAAACCCACCCAGCACTCCGTCAAGCAGATGCGGGCTCTCGGGTGGG
CTACAAGAATTGCTGTTTTGTGCACGTGTCCCTCGTGCCTGAGATCGGCT
CTCCTGGGGAGCAGAAGACGAAACCCACCCAGCACTCCGTCAAGCAGATG
CGGGCTCTCGGTCTGGCACCGGACTTTCTCATGTGCCGAGGGAGCAGTCC
GGTGGTGAAAGGGGCTCGGGATAAGCTGTCCATGTTTTGCCAGGTCTGGC
ACCGGACTTTCTCATGTGCCGAGGGAGCAGTCCGGTGGTGAAAGGGGCTC
GGGATAAGCTGTCCATGTTTTGCCAGGTCCCTCCGGAACGAGTAGTATCG
GTGCACGATGTCTCTAACATCTACCGCGTCCCTCTGCTGCTGCTGGAGGT
CCCTCCGGAACGAGTAGTATCGGTGCACGATGTCTCTAACATCTACCGCG
TCCCTCTGCTGCTGCTGGAG
back to top