mRNA_S-dermatodea_contig10465.329.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10465.329.1
Unique NamemRNA_S-dermatodea_contig10465.329.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig10465.329.1 vs. uniprot
Match: A0A6H5JV32_9PHAE (Selenoprotein O n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JV32_9PHAE)

HSP 1 Score: 420 bits (1079), Expect = 7.390e-141
Identity = 205/233 (87.98%), Postives = 217/233 (93.13%), Query Frame = 1 
Query:    1 QVLRSSIREFLCSEAMHFLNIPTTRAAALVTSDTKVRRDVFYTGNVIQERASIVTRVAPTFLRFGSFEIFKARDQRTGRSGPSVGNDALRVQMLDYAVRRFFPKAAAAGPEGSKARYLAMFEEVVRSTAELVSKWQCVGFTHGVLNTDNMSILGVTIDYGPYGFMDFFDPKFVPNGSDSGGRYSYEKQPEMCKWNLVKFAEALAPALPLADSVAAVESYDALFAGYYREGMRR 699
            +VLRSSIREFLCSEAMHFL IPTTRAAALVTSDTKVRRDVFYTGNVIQERASIVTR+APTFLRFGSFEIFK RD RTGR GPS GNDALR+QML+YA+ RFFP AAAAGP+GSKARYLAM+EE VRSTAELV+KWQCVGFTHGVLNTDNMSILG+TIDYGPYGFMDFFDPKFVPNGSD GGRYSYE+QPEMCKWNL KFAEALAPALPL+DS AA+E YD LF  YY EGMRR
Sbjct:  241 KVLRSSIREFLCSEAMHFLGIPTTRAAALVTSDTKVRRDVFYTGNVIQERASIVTRLAPTFLRFGSFEIFKPRDPRTGRDGPSAGNDALRLQMLEYAIGRFFPGAAAAGPKGSKARYLAMYEEAVRSTAELVAKWQCVGFTHGVLNTDNMSILGLTIDYGPYGFMDFFDPKFVPNGSDGGGRYSYERQPEMCKWNLHKFAEALAPALPLSDSTAALEKYDGLFKRYYEEGMRR 473
[Close]
BLAST of mRNA_S-dermatodea_contig10465.329.1 vs. uniprot
Match: A0A836CN66_9STRA (Selenoprotein O n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN66_9STRA)

HSP 1 Score: 307 bits (786), Expect = 4.550e-98
Identity = 153/234 (65.38%), Postives = 182/234 (77.78%), Query Frame = 1 
Query:    1 QVLRSSIREFLCSEAMHFLNIPTTRAAALVTSDTKVRRDVFYTGNVIQERASIVTRVAPTFLRFGSFEIFKARDQRTGRSGPSVGNDALRVQMLDYAVRRFFPKAAAA--GPEGSKARYLAMFEEVVRSTAELVSKWQCVGFTHGVLNTDNMSILGVTIDYGPYGFMDFFDPKFVPNGSDSGGRYSYEKQPEMCKWNLVKFAEALAPALPLADSVAAVESYDALFAGYYREGMR 696
            +VLRSSIREFLCSEAMH+L IPTTRAA++VTSDT V+RD+FYTG+VI ERA+IV R+APTFLRFGSFEIFK  D  TGR GPS GN  L  +ML Y++  FFP+AAAA  GP G  A  L M+E+VV+ TAEL + WQCVGFTHGVLNTDNMS+LG+TIDYGPYGFM+ FD  +VPNGSD  GRY Y+ QPE+CKWNL KF EAL P LP   +   +++YD ++   Y   MR
Sbjct:  144 KVLRSSIREFLCSEAMHYLGIPTTRAASMVTSDTLVQRDLFYTGDVINERATIVLRIAPTFLRFGSFEIFKGTDPTTGRRGPSEGNVDLLKKMLHYSLSTFFPEAAAAAAGPGGLPAGTLMMYEDVVKRTAELAAAWQCVGFTHGVLNTDNMSLLGLTIDYGPYGFMEHFDRDYVPNGSDGTGRYRYQDQPEICKWNLGKFLEALLPVLPRDAAETTLDTYDDIYERAYASRMR 377
[Close]
BLAST of mRNA_S-dermatodea_contig10465.329.1 vs. uniprot
Match: B3RPL3_TRIAD (Selenoprotein O n=2 Tax=Trichoplax TaxID=10227 RepID=B3RPL3_TRIAD)

HSP 1 Score: 305 bits (782), Expect = 2.150e-97
Identity = 145/232 (62.50%), Postives = 180/232 (77.59%), Query Frame = 1 
Query:    1 QVLRSSIREFLCSEAMHFLNIPTTRAAALVTSDTKVRRDVFYTGNVIQERASIVTRVAPTFLRFGSFEIFKARDQRTGRSGPSVGNDALRVQMLDYAVRRFFPKAAAAGPEGSKARYLAMFEEVVRSTAELVSKWQCVGFTHGVLNTDNMSILGVTIDYGPYGFMDFFDPKFVPNGSDSGGRYSYEKQPEMCKWNLVKFAEALAPALPLADSVAAVESYDALFAGYYREGMR 696
            +VLRSSIREFLCSEAMH L IPTTRA + +TSD++V RD++Y+GN I+E+A+++ R+APTFLRFGSFEIFK  D+ TG  GPSVG   + +Q+L+Y +   FP  AA  P+  K RYLA FEEVV++TA+LV+ WQCVGF HGVLNTDNMSI G+TIDYGP+GF+D +DP +V N SD GGRY++  QPE CKWNL K AEALA  LPLADS   +E Y+ LF  +Y E MR
Sbjct:  143 KVLRSSIREFLCSEAMHHLGIPTTRAGSCITSDSEVLRDIYYSGNPIKEKATVILRIAPTFLRFGSFEIFKPLDKITGSMGPSVGRKDILIQLLEYTINTHFPHVAAKYPDSDKERYLAFFEEVVKATAKLVALWQCVGFCHGVLNTDNMSIAGITIDYGPFGFLDVYDPDYVCNASDDGGRYAFINQPEACKWNLSKLAEALASVLPLADSNPVLEKYNELFHKFYLEKMR 374
[Close]
BLAST of mRNA_S-dermatodea_contig10465.329.1 vs. uniprot
Match: A0A2F0AVA5_ESCRO (Selenoprotein O (Fragment) n=1 Tax=Eschrichtius robustus TaxID=9764 RepID=A0A2F0AVA5_ESCRO)

HSP 1 Score: 293 bits (751), Expect = 2.170e-96
Identity = 147/234 (62.82%), Postives = 178/234 (76.07%), Query Frame = 1 
Query:    1 QVLRSSIREFLCSEAMHFLNIPTTRAAALVTSDTKVRRDVFYTGNVIQERASIVTRVAPTFLRFGSFEIFKARDQRTGRSGPSVGNDALRVQMLDYAVRRFFPKAAAAGPEGSKARYLAMFEEVVRSTAELVSKWQCVGFTHGVLNTDNMSILGVTIDYGPYGFMDFFDPKFVPNGSDSGGRYSYEKQPEMCKWNLVKFAEALAPALPL--ADSVAAVESYDALFAGYYREGMR 696
            +VLRSSIREFLCSEAM  L IPTTRA A VTS + V RDVFY GN   E+ ++V RVAPTFLRFGSFEIFK+ D+ TGR+GPSVG + +RVQMLDY +  F+P+  A     S  R+ A F EV R TA+LV++WQCVGF HGVLNTDNMSI+G+TIDYGP+GF+D +DP  V N SD+ GRYSY +QPE+CKWNL K AEAL PALPL  A+++ A E +DA F  +Y + MR
Sbjct:    9 KVLRSSIREFLCSEAMFHLGIPTTRAGACVTSQSSVERDVFYDGNPRHEQCAVVLRVAPTFLRFGSFEIFKSSDEHTGRAGPSVGRNDIRVQMLDYVISTFYPEIQATHASDSVQRHAAFFREVTRRTAQLVAEWQCVGFCHGVLNTDNMSIVGLTIDYGPFGFLDRYDPDHVCNASDTAGRYSYSRQPEVCKWNLQKLAEALEPALPLELAEAILA-EEFDAEFRRHYLQKMR 241
[Close]
BLAST of mRNA_S-dermatodea_contig10465.329.1 vs. uniprot
Match: A0A7S2V3H2_9STRA (Selenoprotein O n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3H2_9STRA)

HSP 1 Score: 305 bits (780), Expect = 2.230e-96
Identity = 147/217 (67.74%), Postives = 176/217 (81.11%), Query Frame = 1 
Query:    1 QVLRSSIREFLCSEAMHFLNIPTTRAAALVTSDTKVRRDVFYTGNVIQERASIVTRVAPTFLRFGSFEIFKARDQRTGRSGPSVGNDALRVQMLDYAVRRFFPKAAAAGPEGSKARYLAMFEEVVRSTAELVSKWQCVGFTHGVLNTDNMSILGVTIDYGPYGFMDFFDPKFVPNGSDSGGRYSYEKQPEMCKWNLVKFAEALAPALPLADSVAAVE 651
            +VLRSSIREFLCSEA HFL IPTTRA  LVTS+TKV RDV+YTGN I E+ASIV R+AP+FLRFGSFEIFK  D  TGR GPSVGN AL  Q+LD+A+ ++FP+ AAA    S   Y AM++EVV+ TA LV+ WQC GFTHGVLNTDNMSILG+TIDYGP+GFM+++DP +VPNGSD+ GRYSY KQP++C+WNL+K  EAL  ALP+  S A +E
Sbjct:  201 KVLRSSIREFLCSEANHFLGIPTTRAGTLVTSNTKVVRDVYYTGNPILEKASIVLRIAPSFLRFGSFEIFKPSDALTGRKGPSVGNTALLHQLLDFAIAQYFPEVAAAHAPASVESYAAMYKEVVQKTARLVALWQCTGFTHGVLNTDNMSILGLTIDYGPFGFMEYYDPNYVPNGSDNAGRYSYTKQPDICRWNLMKLGEALQEALPMDQSRAILE 417
[Close]
BLAST of mRNA_S-dermatodea_contig10465.329.1 vs. uniprot
Match: G3PJI5_GASAC (Selenoprotein O n=1 Tax=Gasterosteus aculeatus TaxID=69293 RepID=G3PJI5_GASAC)

HSP 1 Score: 298 bits (764), Expect = 9.550e-96
Identity = 145/233 (62.23%), Postives = 174/233 (74.68%), Query Frame = 1 
Query:    1 QVLRSSIREFLCSEAMHFLNIPTTRAAALVTSDTKVRRDVFYTGNVIQERASIVTRVAPTFLRFGSFEIFKARDQRTGRSGPSVGNDALRVQMLDYAVRRFFPKAAAAGPEGSKARYLAMFEEVVRSTAELVSKWQCVGFTHGVLNTDNMSILGVTIDYGPYGFMDFFDPKFVPNGSDSGGRYSYEKQPEMCKWNLVKFAEALAPALPLADSVAAVESYDALFAGYYREGMRR 699
            +VLRSSIREFLCSE MHFL +PTTRAA +VTSDT+V RDV+Y+GN   ER S V R+APTFLRFGSFEIFK  D+ TGR GPS G D +R QM+DY +  F+P      P+  + R +A F EV R TA +V++WQCVGF HGVLNTDNMSILG+T+DYGPYGFMD FDP F+ N SD+ GRYSY+ QP +C+WNLVK AEALAP LP   + A +  Y  L+  +Y E MRR
Sbjct:  148 KVLRSSIREFLCSEVMHFLGVPTTRAACVVTSDTRVVRDVYYSGNPRNERCSAVVRIAPTFLRFGSFEIFKQADEHTGRQGPSYGRDEIRGQMMDYVIEMFYPDIQRDHPDRVE-RNVAFFREVTRRTARVVAQWQCVGFCHGVLNTDNMSILGLTLDYGPYGFMDRFDPDFICNASDNSGRYSYQAQPAICRWNLVKLAEALAPELPPDRAEAVLSEYLGLYNSFYLENMRR 379
[Close]
BLAST of mRNA_S-dermatodea_contig10465.329.1 vs. uniprot
Match: G3PJH3_GASAC (Selenoprotein O n=1 Tax=Gasterosteus aculeatus TaxID=69293 RepID=G3PJH3_GASAC)

HSP 1 Score: 298 bits (764), Expect = 1.880e-95
Identity = 145/233 (62.23%), Postives = 174/233 (74.68%), Query Frame = 1 
Query:    1 QVLRSSIREFLCSEAMHFLNIPTTRAAALVTSDTKVRRDVFYTGNVIQERASIVTRVAPTFLRFGSFEIFKARDQRTGRSGPSVGNDALRVQMLDYAVRRFFPKAAAAGPEGSKARYLAMFEEVVRSTAELVSKWQCVGFTHGVLNTDNMSILGVTIDYGPYGFMDFFDPKFVPNGSDSGGRYSYEKQPEMCKWNLVKFAEALAPALPLADSVAAVESYDALFAGYYREGMRR 699
            +VLRSSIREFLCSE MHFL +PTTRAA +VTSDT+V RDV+Y+GN   ER S V R+APTFLRFGSFEIFK  D+ TGR GPS G D +R QM+DY +  F+P      P+  + R +A F EV R TA +V++WQCVGF HGVLNTDNMSILG+T+DYGPYGFMD FDP F+ N SD+ GRYSY+ QP +C+WNLVK AEALAP LP   + A +  Y  L+  +Y E MRR
Sbjct:  160 KVLRSSIREFLCSEVMHFLGVPTTRAACVVTSDTRVVRDVYYSGNPRNERCSAVVRIAPTFLRFGSFEIFKQADEHTGRQGPSYGRDEIRGQMMDYVIEMFYPDIQRDHPDRVE-RNVAFFREVTRRTARVVAQWQCVGFCHGVLNTDNMSILGLTLDYGPYGFMDRFDPDFICNASDNSGRYSYQAQPAICRWNLVKLAEALAPELPPDRAEAVLSEYLGLYNSFYLENMRR 391
[Close]
BLAST of mRNA_S-dermatodea_contig10465.329.1 vs. uniprot
Match: A0A5J5N0A7_MUNRE (Selenoprotein O n=2 Tax=Muntiacus TaxID=9885 RepID=A0A5J5N0A7_MUNRE)

HSP 1 Score: 296 bits (758), Expect = 4.270e-95
Identity = 148/235 (62.98%), Postives = 180/235 (76.60%), Query Frame = 1 
Query:    1 QVLRSSIREFLCSEAMHFLNIPTTRAAALVTSDTKVRRDVFYTGNVIQERASIVTRVAPTFLRFGSFEIFKARDQRTGRSGPSVGNDALRVQMLDYAVRRFFPKAAAAGPEGSKARYLAMFEEVVRSTAELVSKWQCVGFTHGVLNTDNMSILGVTIDYGPYGFMDFFDPKFVPNGSDSGGRYSYEKQPEMCKWNLVKFAEALAPALPL--ADSVAAVESYDALFAGYYREGMRR 699
            +VLRSSIREFLCSEAM  L +PTTRA A VTS + V RD+FY GN   E  ++V R+APTFLRFGSFEIFK+RD+ TGR+GPSVG D +R+QMLDY +  F+P+  AA PE    R+ A F EV R TA LV++WQCVGF HGVLNTDNMSI+G+TIDYGP+GF+D +DP  V N SD+ GRY+Y KQPE+CKWNL K AEAL PALPL  A+++ A E +DA F  +Y + MRR
Sbjct:   34 KVLRSSIREFLCSEAMFHLGVPTTRAGACVTSQSTVVRDIFYDGNPRPEPCAVVLRLAPTFLRFGSFEIFKSRDEHTGRAGPSVGRDDIRLQMLDYVISTFYPEIQAAHPEDPVQRHAAFFREVTRRTARLVAEWQCVGFCHGVLNTDNMSIVGLTIDYGPFGFLDRYDPDHVCNASDTAGRYAYSKQPEVCKWNLQKLAEALDPALPLELAEAILADE-FDAEFGRHYLQKMRR 267
[Close]
BLAST of mRNA_S-dermatodea_contig10465.329.1 vs. uniprot
Match: A0A6S7I5Z8_PARCT (Selenoprotein O (Fragment) n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7I5Z8_PARCT)

HSP 1 Score: 296 bits (757), Expect = 4.440e-95
Identity = 146/234 (62.39%), Postives = 176/234 (75.21%), Query Frame = 1 
Query:    1 QVLRSSIREFLCSEAMHFLNIPTTRAAALVTSDTKVRRDVFYTGNVIQERASIVTRVAPTFLRFGSFEIFKARDQRTGRSGPSVGNDALRVQMLDYAVRRFFPKAAAAGPEGSKARYLAMFEEVVRSTAELVSKWQCVGFTHGVLNTDNMSILGVTIDYGPYGFMDFFDPKFVPNGSDSGGRYSYEKQPEMCKWNLVKFAEALAPALPLADSVAAVES-YDALFAGYYREGMRR 699
            +VLRSSIREFLCSEAMH L IPTTRA   +TSDTKV RD+FY GN I E++SIV R+APTF+RFGSFEI K  D  TGR GPS G   + +Q+LDY ++ F+P+  AA  E S+ RYLA ++EV+  TA LV++WQCVGF HGVLNTDNM+ILG+TIDYGP+GFMD F+P FV N SD   RYSY+ QPE+CKWNL+K AEA+A  LP+A S   +E  YD  F  YY   MRR
Sbjct:  192 KVLRSSIREFLCSEAMHHLGIPTTRAGCCITSDTKVVRDIFYDGNPIYEKSSIVLRIAPTFIRFGSFEIVKQADLMTGRRGPSAGRKDILIQLLDYVIKTFYPQIYAAHGENSEDRYLAFYKEVIVRTARLVAEWQCVGFCHGVLNTDNMNILGLTIDYGPFGFMDNFNPDFVCNASDDMARYSYKAQPEICKWNLIKLAEAMADVLPIAKSRILLEDVYDLEFLDYYLNKMRR 425
[Close]
BLAST of mRNA_S-dermatodea_contig10465.329.1 vs. uniprot
Match: G3PJH9_GASAC (Selenoprotein O n=4 Tax=Gasterosteidae TaxID=69291 RepID=G3PJH9_GASAC)

HSP 1 Score: 298 bits (764), Expect = 7.420e-95
Identity = 145/233 (62.23%), Postives = 174/233 (74.68%), Query Frame = 1 
Query:    1 QVLRSSIREFLCSEAMHFLNIPTTRAAALVTSDTKVRRDVFYTGNVIQERASIVTRVAPTFLRFGSFEIFKARDQRTGRSGPSVGNDALRVQMLDYAVRRFFPKAAAAGPEGSKARYLAMFEEVVRSTAELVSKWQCVGFTHGVLNTDNMSILGVTIDYGPYGFMDFFDPKFVPNGSDSGGRYSYEKQPEMCKWNLVKFAEALAPALPLADSVAAVESYDALFAGYYREGMRR 699
            +VLRSSIREFLCSE MHFL +PTTRAA +VTSDT+V RDV+Y+GN   ER S V R+APTFLRFGSFEIFK  D+ TGR GPS G D +R QM+DY +  F+P      P+  + R +A F EV R TA +V++WQCVGF HGVLNTDNMSILG+T+DYGPYGFMD FDP F+ N SD+ GRYSY+ QP +C+WNLVK AEALAP LP   + A +  Y  L+  +Y E MRR
Sbjct:  187 KVLRSSIREFLCSEVMHFLGVPTTRAACVVTSDTRVVRDVYYSGNPRNERCSAVVRIAPTFLRFGSFEIFKQADEHTGRQGPSYGRDEIRGQMMDYVIEMFYPDIQRDHPDRVE-RNVAFFREVTRRTARVVAQWQCVGFCHGVLNTDNMSILGLTLDYGPYGFMDRFDPDFICNASDNSGRYSYQAQPAICRWNLVKLAEALAPELPPDRAEAVLSEYLGLYNSFYLENMRR 418
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10465.329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JV32_9PHAE7.390e-14187.98Selenoprotein O n=2 Tax=Ectocarpus TaxID=2879 RepI... [more]
A0A836CN66_9STRA4.550e-9865.38Selenoprotein O n=1 Tax=Tribonema minus TaxID=3033... [more]
B3RPL3_TRIAD2.150e-9762.50Selenoprotein O n=2 Tax=Trichoplax TaxID=10227 Rep... [more]
A0A2F0AVA5_ESCRO2.170e-9662.82Selenoprotein O (Fragment) n=1 Tax=Eschrichtius ro... [more]
A0A7S2V3H2_9STRA2.230e-9667.74Selenoprotein O n=1 Tax=Fibrocapsa japonica TaxID=... [more]
G3PJI5_GASAC9.550e-9662.23Selenoprotein O n=1 Tax=Gasterosteus aculeatus Tax... [more]
G3PJH3_GASAC1.880e-9562.23Selenoprotein O n=1 Tax=Gasterosteus aculeatus Tax... [more]
A0A5J5N0A7_MUNRE4.270e-9562.98Selenoprotein O n=2 Tax=Muntiacus TaxID=9885 RepID... [more]
A0A6S7I5Z8_PARCT4.440e-9562.39Selenoprotein O (Fragment) n=3 Tax=Paramuricea cla... [more]
G3PJH9_GASAC7.420e-9562.23Selenoprotein O n=4 Tax=Gasterosteidae TaxID=69291... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10465contigS-dermatodea_contig10465:214..7793 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Seed eggNOG ortholog2880.D8LIY8
Preferred nameSELENOO
KEGG koko:K20865
KEGG Pathwayko04621,map04621
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.Uncharacterized ACR, YdiU/UPF0061 family
EggNOG OGsCOG0397@1,KOG2542@2759
Ec32 ortholog descriptionselenoprotein O homolog, but not a selenoprotein itself
Ec32 orthologEc-20_002060.1
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Taxonomic scopeEukaryota
Seed ortholog score426.4
Seed ortholog evalue8.6e-117
Hectar predicted targeting categoryother localisation
Exons5
Model size699
Cds size699
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10465.329.1prot_S-dermatodea_contig10465.329.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10465 214..7793 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924158.393416-CDS-S-dermatodea_contig10465:213..3691622924158.393416-CDS-S-dermatodea_contig10465:213..369Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10465 214..369 +
1694079057.5497386-CDS-S-dermatodea_contig10465:213..3691694079057.5497386-CDS-S-dermatodea_contig10465:213..369Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10465 214..369 +
1622924158.4030216-CDS-S-dermatodea_contig10465:3068..32711622924158.4030216-CDS-S-dermatodea_contig10465:3068..3271Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10465 3069..3271 +
1694079057.5625737-CDS-S-dermatodea_contig10465:3068..32711694079057.5625737-CDS-S-dermatodea_contig10465:3068..3271Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10465 3069..3271 +
1622924158.4183908-CDS-S-dermatodea_contig10465:5221..53341622924158.4183908-CDS-S-dermatodea_contig10465:5221..5334Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10465 5222..5334 +
1694079057.573507-CDS-S-dermatodea_contig10465:5221..53341694079057.573507-CDS-S-dermatodea_contig10465:5221..5334Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10465 5222..5334 +
1622924158.4302258-CDS-S-dermatodea_contig10465:7116..72141622924158.4302258-CDS-S-dermatodea_contig10465:7116..7214Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10465 7117..7214 +
1694079057.5818195-CDS-S-dermatodea_contig10465:7116..72141694079057.5818195-CDS-S-dermatodea_contig10465:7116..7214Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10465 7117..7214 +
1622924158.4409173-CDS-S-dermatodea_contig10465:7664..77931622924158.4409173-CDS-S-dermatodea_contig10465:7664..7793Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10465 7665..7793 +
1694079057.5908246-CDS-S-dermatodea_contig10465:7664..77931694079057.5908246-CDS-S-dermatodea_contig10465:7664..7793Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10465 7665..7793 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10465.329.1

>prot_S-dermatodea_contig10465.329.1 ID=prot_S-dermatodea_contig10465.329.1|Name=mRNA_S-dermatodea_contig10465.329.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=233bp
QVLRSSIREFLCSEAMHFLNIPTTRAAALVTSDTKVRRDVFYTGNVIQER
ASIVTRVAPTFLRFGSFEIFKARDQRTGRSGPSVGNDALRVQMLDYAVRR
FFPKAAAAGPEGSKARYLAMFEEVVRSTAELVSKWQCVGFTHGVLNTDNM
SILGVTIDYGPYGFMDFFDPKFVPNGSDSGGRYSYEKQPEMCKWNLVKFA
EALAPALPLADSVAAVESYDALFAGYYREGMRR
back to top

mRNA from alignment at S-dermatodea_contig10465:214..7793+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10465.329.1 ID=mRNA_S-dermatodea_contig10465.329.1|Name=mRNA_S-dermatodea_contig10465.329.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=7580bp|location=Sequence derived from alignment at S-dermatodea_contig10465:214..7793+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTACTTCGCTCGTCGATCAGGGAGTTCCTGTGCTCGGAGGCGATGCA
CTTTCTCAATATCCCGACAACGCGGGCGGCGGCTCTCGTAACGTCGGACA
CCAAAGTCCGGCGAGACGTATTCTACACGGGGAACGTCATCCAGGAGCGA
GCCTCGGTGAGCTTTTATTTTATTTTTTATAAAGAAACAGAACACAGAAA
GTGTACTATACAATATACAATCCTTACAGTAACTCATCGGGACTGGACAG
GACATGACCCGGGTGGACTTTGTTGTACACAAAACTGAGACAATTCATCG
CCCCCCTTGACCTTACAAGTACCTTTGTGATGCCGCAGTTAAGTGTATAC
AGCAGTAGAGATATATTTTTTATTAAGTAGCTCGGCTGGGCACCGCACAT
ATATGCAACTTTTGGCACAAGACAGTTACCTCCGTACCGTACCTGACTGT
TTTTTCTTGGGTAGAGGTGGGATAAATTGTTGTTACAGAAGCGAAAATCT
TGTGCATGTGTGGGTGGATTTTGTGTTTTCTTCAGTTGGGTGATGTAGAA
GGGTTATAGGACTGGGGCATGCGCGAGAGCGTTTTGTTCCTGTGGGCGTA
GCGTACTGTAGTAGCTGGGAGAGGTTTATTGGGGTGGAGCGTAGTTACGA
CAGCCAAGTATTGAGTTTGTTTAATTAACCTTTTTGATACTATCAATAGG
ATTAATAGTATTAATATATTGCTTATAGTAGGGCTCTCCGAAACGACCAA
AAACTCCCTCGATTCCAGTCGACAGCTACGATAGCCCCGAATCCCTTGGG
CTCCTTTCTTTCTCGTATCCTGCGCCATAAGCCGTGGGTTCCGTTCCCCA
GGGCTCCGCTTCAAGCACGCCTGATTACCTGTTAACCGGCGCTCCAAACA
GGGGGCTAGTACCAAAAGGGTTAACAAACCATCACTGGCTCCGAGCCATG
CGAAGGATTCTGATCGGAATGTGGGGGTTTTGGACATTCGGTTGAGAATT
CGAACTCTTCCTGGTGGTGGCCTGCCAACTGCATGATGAATTCGGAATCA
TCGCAGAGATGGCTACCCCTGCATTCATCCAGTCAGGGGTGTGCATAAAC
TGGTGTTGCTGTAGCCATAGCTATGCTGTAGTACCTGCTGGGGGGGAGAC
AACCCTGCAGGGTGGACTGCGTCGAGTCTGAGAGCCACCGTTTTACTCGG
AGGGTTCTGATCGTCATGTGTGTTTTGGAGTTTTGGACGTTCGGTAAGAA
TTTAAACTATTTTCCTGGTGGTCTGTCAACTGCACGATGAATTTGGAATC
ATCGCTACTGTATCGCAGCGATGACCATGCATGCGTTTATTCAGTGAGCG
AGGCTGTACAGAACGGGGTCCTGCCAGACGTTTGCCGACGTAGGCCTATT
GGTACCACCACCACTACCACCACCCGCCCCCTCCCCCCCTTCTCTCCCCT
AAAAATAAAGATTTCAGAAACATAGAGCTATTAGAGCGTTGGGGTACGGT
CCCACCTTCTCAAGAGGGAAGATGGTCCAAGCTATCATACACCTATGGAG
GCTGGCTCACTTGTTATATATGATGCTATGGTGTCTTATCATGTATGATG
TTATATGGTTATGGTATCATACAGGACATGAGTCTTTGTCCTGAGGTATA
TCCTGGTGTTGTCCCCCCCTTCCGTTTTCGTTAACATGTTGGTATGGGTA
TTTGGGAGGCGTCTATTTTTTTCGGCAGGGACATCTTGGCACCCAGATGC
GCTAACGCGACAGCGCGCGTGCAAACGGGCTTATGGTGCCCAGCTCTAGC
CCCTTCCTCAGGGGCGGGCTCTGGGAAAGCTCCTGGCATGAGCGGTGTCA
GGAGCGCATCGTCACAAAAAATATCACAAGCTGTATGAAAACCGCAATTC
GGCGGGATTGTTGCCAATCGCCGGCGAATTATTTAGCGGTGGAAAAGCTG
CCATTTCTCATGCGGCAACCCTTCTGTGCAGCATTTTCATTGCTGCCAGA
TGCGCTACATTACCCAAGCTACCTGCGTGGAGAGGCCCTTGATGGCTTTT
CTTCCCTTCCTCGTCATGTGTGCGCCGGTCGGCACCAGCCACAGCAAAAA
CGCCTGTAAAATATTAAGAGCCCATGCCATGGATACTGTTTTTTTGCGGA
ATTTAGTACCATATTTTAGTACTTCGAAGTATATCTTTATCTGCCCCTGG
GTGCAGACTGCTGAACAGCTCAGCAGCAGCAGCAGTGCTACAGAGTACAC
ACCTCTGGCACTGCTGGGTGTTCACTTCTTTCTGCTACGTGCACTGCTGT
AACCCTGCGCGGGGAGGCTCTCGGTTTGCTCCTGTCCCCTTTTCTCTATC
TGTGCGCCCGTGGGCACCCGCAGCGTGGGTGCGTGCATGGTCAATGTTCC
TTGTATAGGGCCATATCTCGTGTTTTTTCTTTTTTCATGAGATTTTTGTT
GTTGTTTGGGATTTCCTGGTATTATTATTAGTATTAGTATTAGTATTGTA
TGTATTTATGTATAATAGGAATAGTATAGTTGGGTAATTATGGTCGTGAT
ATTTGGTCCTGATTACTGCATAACCTCCGTAATATAATATAATATAATAT
AATATTAACAAGCCGCATTCCCTATCATACGATACAATGACAAACAATAA
ATACACTAAACTCAAAACTATAATTGAACGGGAACGAGATTGCATTGCTA
ACTGTACATTTTTATTTTGTTGTTCGACGTTCCGTTCTCAGTACCAACCC
AACCCAATCCAAACCCAATCCAAACCCAACATAACAGAACCCAACCATCC
CTCCAACCCTTGCTGGCCGCTCCCGTGGCCTCCTCTTCTCCCCTCTCCAT
ATCAGATCGTTACCAGAGTCGCTCCGACATTCCTTCGCTTCGGGTCGTTT
GAGATCTTCAAGGCGAGGGACCAGCGCACCGGGCGGTCCGGTCCGAGCGT
CGGCAATGATGCTCTCCGCGTCCAGATGCTGGACTACGCGGTCCGAAGGT
TCTTCCCGAAGGCTGCGGCCGCCGGCCCCGAGGGGTCGAAGGCGCGGTAC
CTGGCCATGTGAGGAGAGGCTTGGGGGGTGTCCTCGTATGCATGCATGCG
TATTTTTTTCTTCTTGTATATTTTTCAGCACTGTTTTCAGGAGGCCTTTT
CTATATTGTCGAATTTTTTTCTTGTCTCTCTCCCTCTCTCCCTACTACTG
TAGTTATATATACACTACCTCCTTTCAGAGGCGTTTTTAGTATTGTATCA
AACATGTACATACACGTTTTTTGCTTCTACTATTCTTCTATGTGATTACA
CCTATTAAACCCCCCCTTTTTTTCTCAGAGAGGCTTTTTTTATATATTTT
ACTGTAAGATGGTTTGAATGCTGTATGATCCAATAGTGGCAAAAAACTAT
TCAAGTTTTTGTCCAACGATCTCCCGCGCGCTGAAAACGCAAAAGCGAAA
GCGCGATCGAGAACTTGTGCAGCAAAAGCGATGGAAAACGTCACGATACA
CGAGAGCCACGCTTAGCCTGCCTGCACGGTGGTGGTGCGCGTGTGTGCGC
ACGGCGCCCACTCGTCACCGCGATATACATTACCTGTACGATAGTGGCGA
TATTCAATCCCACGAGAGTCAAAGGCTGCTACATTAGGAATGGTGCACTA
CAAAAAGCAGCACTCATCATCGGAGTGGCGGAGTGGGAAGAAGCTTCCAA
GAACTTTCCAGGAAGGTTCTGGGAAACAAACGTCTTGCTGGAAATCACGA
CAGAGAGAGAGAGAGAGAGATAACTATTAATATGATTAATCACTGCGCTG
TATGAACCTGACTGGCATGGGAATATGGGATAGCACTTGAACCTTCGGGG
AGTGAGTCTATAGTATATAGTATATAGTATGTATTAATAGTATATGCAAT
ACTATGTACTATATACTATAATAGTAAACACGTTTTAGGGGTTAGGCCCT
CTGCCCGCACCGTTATTTCGCATTGAAGAGCTACCCAACGACGGCTACTA
TTCGCTCTTATACTTAAAGTGGCGGTACAGTAGAAAAGCGACATCATGCC
ACGCTTGGGTCGCGTACACGGTGCACTCGTGCGTGTGTAGCCCGTCACCG
CATTTGCCCGTAATCACGACACTCGGCGAAAAAAAGACGCCTTCGTTTCG
AAAAGGGCTATACACAAGGATCCCTCGCGAACACAGGCAGCATTCGGATG
AGATAAGCCCGGTCGGTCGGCGTACGTGACTCACACAGCTATATACCGTT
CTTGTTTGATTGATTGATTGATCGATTAATGTATTTGGTGGATTGGTTTT
GCGGATACCAGGTCCGCTAGATATGGTATTCCCTTGAGGGTGTAACGTAC
AGACGCCTCCTTACACGCATACACCACTACCACGTCCTCGTGGGACACTT
TTTCCTGGTGGCCTGTGTCCTCGCGAGTGCGGTTGCCCCCAAGACCACCC
TGGCTTGTCCCAAGACCTCACCTCGGTGTGTGTACATTACTCCAACGCCA
CCCATCAAGAAGATCATATGTTTGGCCTGAAGTATCACCTTACACTTGAA
GCTATTTAGCTTTTCCCGCATTGGAACCTACAACTTGATGTGATTTCTTT
GATTTGATGTTATCGCACTCATAGACAATCCATCCTGCTCGTGGTTCGCA
ACAGAGTTACTGAATCCGTACAGCGAGTGACAGCAGTCGCTCGTGTGCTG
TTGTTAGCGCTTGTGGCGAGGTTGAGGGAGGATACACACAGAGTGAATTA
ATCTTCCACATAGTTGAATGTGTGATGATAATAATAATACACAGACACCC
AAGCTGCCTTCCTGCCAGCCTGTCGGGTACACACCTCAGAAGCACGCCTT
CACAATCCTGCATAAACCCACACGGTAGAATATAGTCATTATTGTACTAC
AAATACTCCAACAGTTCAGATTCGAAGTCGAGGAGTATAAATTCTGTAAG
ATTATTATGCATGCGCACAATGTAACATCCAACACCGTCGGAACTACCCA
CCGATCAGGTTTGAGGAAGTCGTTCGCAGCACGGCCGAGCTGGTATCGAA
GTGGCAGTGCGTCGGGTTCACCCACGGGGTGCTCAACACGGACAACATGA
GCATTCTCGGAGTCACGATCGGTACGTGTGCGTGTGCGTGTGCGTGGTTT
TTCCTTGTATTGATCAGCGCGCCCCGTTGTTGAGAGGGTAAACCAACGTC
CAGTAAGACGGAGAAGAGGACCCGGGTTCGAATCCGGTCAGGGTCGATAT
TTGTTTATGTCTCTTACCGCCGCCGTGGAAAGCTTTCGCGAGAGAGAGCG
TGAGCGTGAGTAAGCAAAAAATCCGAGAAATGGCGAGCTGAGGGAGTGCC
GAACGAACCCAATGCCTTCGCGATAAAAACTTAAGGTAAGAACATACCGG
GGATAAGAGAGATGGAACGACCCCTTGCGACCACAGACGGACCTACCTCG
GAAAAGCCGGTCTATCATACTAATATTAGTATAGTATGTGTGCCAAAAAA
AAAAACACTTGTGTGTTTTTCTTTTTCCAGGGTTAGCTTTCATGATACCG
TCGTTGTGGTGTTCAGCCGAGAGAAGCGCAAGCACGCCCTCCATCATTCT
CCTCTCCTGGCCTTTCTCGTGTTTCATTGCAATTAAGGGAATCGGAGACA
CACGAGCATCAGGGATGGATGTTCATTTTGGGGAATTCATCCGACTGCTT
TTAACACGCTCCCAGATTCCTTGTGTTGGGAAGACATCGGTCGGGGCGGG
CGGGCGGGCGACGCACGAAAACTCATTTTTATTTCTGCTACAGCAATGGC
AGTAGCAGCAGCAGCAGCAGCAGCGGTTGTTTTTGTTGCCTCTTGATCGC
TTCATCGCTCAGGCGTATTGAGCCCCTTGTGCGGCTTGATAAGCCCAACC
CGTGTTTGCTTCGCGCGTGGCGCGCTTGCTTGCATCCATGCAGGCATACA
TGCCCCATGACTTGGCGAATCAACGTCTGCTGTTTTTATTTCTCCGTCGA
TTATCATTGTTGTTTTTGATGCCGGTGAAAAAAACATCGTCTTGTACTGT
ATTGTGATGCATTTCATCTAAATGGGAGGTGAGAGTCGCGTGCTCCTCGC
CCACAAGTAGCCCCCTTTTTTTGGCTCGAAAGAGACATATACTTGTACTA
CTTGGCTTCAACTCCAGGAGAAACGCCGCGCTTGCTTGGGGTTATGATGT
GACAGTAGTGCGTCGCCCGGAAACCCCTGAAACTCTAGTAAAATTATTTC
AAAAACATATAGGACTTAGAGTTGGGGTCCCACAATTTTTGAAGGAAGGA
AGATATGGTCCAAGCTGTTATAAACACCTACCGCTATGGAGTCTCGCGTT
GCGTATGATGCTATTGTTTCATGTAACGTGTGATGATGTGGGACCCCCCT
AAAAAATAAAGATTTCACAAACATAGAGCGAGCGTTAGGGTCCCACCTTT
TCAAGAGGAAAGATGGTCCAAGCTGTTAAACACACCTATGGAGGCTCGCT
TTTACATATGATGCTATGGTTCCCCCCGCGAAACAGTAAAATATTTATAA
AACACAGAGCGAATGTTGGGGTTCGATCTTTTTTGTAGAGGAAAATATGG
CCCAAGGTAACTAACTCAGTGGAGGTCTACGTTATGTAAAACGCTGAGAG
GTCGTTGGTTGGAGAAATGTTACGATCTGGGTAGGGGTGTGGCAGTACAA
TACAATTAAAGCTTAACTCTGGGAATGGAATATTATGTTTAATGTGTGGG
ATTTTGTGTGGGCATCCATTTGTTATCGACATTTTTATGTTGTTCCTTAC
TTGTACGCTATACCCCCCCCCCCCCCTCCCCCCCCTCCCCTCCCCATGTG
CACGGACTGTTTTGTCTCTGCTTCCGGCGCCCATTTTTTTGCGCTTTTCC
CAGACTACGGGCCTTACGGTTTCATGGATTTCTTCGATCCGAAGTTCGTC
CCCAACGGCTCGGACTCCGGAGGCCGCTACTCGTACGAGAAGCAACCCGA
GGTGAGGTCTTACTCTGTGTCATATGTTTGCAGGACTTCGTTTATGGTTG
ATACGAAGTACATGTATTGTGTTTATTGTACAGACGTGTTAATGGTTGCT
TGGCGAAGAAAACTGCAGACGAGGAACGTTTTGTTTGGCTCCTGCTTGCG
GCCGTGTGTTTTTTTGCTTGCGGCGCGCTGATGGCGGGGGTCGGGGTCGG
AGTAAAACAAGGTCGAGATGCACGCAGAATCATCGCCATGCGCGCGCCGT
GCGTGTAGCTGATTGTTTACTCTTGTGGCGCGCGAAACATGGCGCACCAA
TCCCTTTCCGCGGTGCATGAGAAACATTACCTCACCCGACGGTCGTCTGC
GTTTCACCTCTTTATCTTCCTCTTTTCTTGTTGCCGTTTTTTTGTTTTCG
CGTTTTCCCTTCTACTTCGTTTGCGCGATCGGGCCGCGATCGACCTCAAA
GATGTGCAAGTGGAACCTGGTCAAGTTCGCGGAGGCTCTCGCCCCGGCGC
TTCCGCTGGCCGACTCGGTGGCCGCCGTCGAAAGCTACGACGCGCTGTTT
GCTGGCTACTACCGGGAAGGGATGCGAAGG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig10465:214..7793+

>mRNA_S-dermatodea_contig10465.329.1 ID=mRNA_S-dermatodea_contig10465.329.1|Name=mRNA_S-dermatodea_contig10465.329.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1398bp|location=Sequence derived from alignment at S-dermatodea_contig10465:214..7793+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTACTTCGCTCGTCGATCAGGGAGTTCCTGTGCTCGGAGGCGATGCA
CTTTCTCAATATCCCGACAACGCGGGCGGCGGCTCTCGTAACGTCGGACA
CCAAAGTCCGGCGAGACGTATTCTACACGGGGAACGTCATCCAGGAGCGA
GCCTCGCAGGTACTTCGCTCGTCGATCAGGGAGTTCCTGTGCTCGGAGGC
GATGCACTTTCTCAATATCCCGACAACGCGGGCGGCGGCTCTCGTAACGT
CGGACACCAAAGTCCGGCGAGACGTATTCTACACGGGGAACGTCATCCAG
GAGCGAGCCTCGATCGTTACCAGAGTCGCTCCGACATTCCTTCGCTTCGG
GTCGTTTGAGATCTTCAAGGCGAGGGACCAGCGCACCGGGCGGTCCGGTC
CGAGCGTCGGCAATGATGCTCTCCGCGTCCAGATGCTGGACTACGCGGTC
CGAAGGTTCTTCCCGAAGGCTGCGGCCGCCGGCCCCGAGGGGTCGAAGGC
GCGGTACCTGGCCATATCGTTACCAGAGTCGCTCCGACATTCCTTCGCTT
CGGGTCGTTTGAGATCTTCAAGGCGAGGGACCAGCGCACCGGGCGGTCCG
GTCCGAGCGTCGGCAATGATGCTCTCCGCGTCCAGATGCTGGACTACGCG
GTCCGAAGGTTCTTCCCGAAGGCTGCGGCCGCCGGCCCCGAGGGGTCGAA
GGCGCGGTACCTGGCCATGTTTGAGGAAGTCGTTCGCAGCACGGCCGAGC
TGGTATCGAAGTGGCAGTGCGTCGGGTTCACCCACGGGGTGCTCAACACG
GACAACATGAGCATTCTCGGAGTCACGATCGGTTTGAGGAAGTCGTTCGC
AGCACGGCCGAGCTGGTATCGAAGTGGCAGTGCGTCGGGTTCACCCACGG
GGTGCTCAACACGGACAACATGAGCATTCTCGGAGTCACGATCGACTACG
GGCCTTACGGTTTCATGGATTTCTTCGATCCGAAGTTCGTCCCCAACGGC
TCGGACTCCGGAGGCCGCTACTCGTACGAGAAGCAACCCGAGACTACGGG
CCTTACGGTTTCATGGATTTCTTCGATCCGAAGTTCGTCCCCAACGGCTC
GGACTCCGGAGGCCGCTACTCGTACGAGAAGCAACCCGAGATGTGCAAGT
GGAACCTGGTCAAGTTCGCGGAGGCTCTCGCCCCGGCGCTTCCGCTGGCC
GACTCGGTGGCCGCCGTCGAAAGCTACGACGCGCTGTTTGCTGGCTACTA
CCGGGAAGGGATGCGAAGGATGTGCAAGTGGAACCTGGTCAAGTTCGCGG
AGGCTCTCGCCCCGGCGCTTCCGCTGGCCGACTCGGTGGCCGCCGTCGAA
AGCTACGACGCGCTGTTTGCTGGCTACTACCGGGAAGGGATGCGAAGG
back to top