mRNA_S-dermatodea_contig10454.325.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10454.325.1
Unique NamemRNA_S-dermatodea_contig10454.325.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10454.325.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10454contigS-dermatodea_contig10454:1274..1887 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size614
Cds size342
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924158.0715847-UTR-S-dermatodea_contig10454:1273..15451622924158.0715847-UTR-S-dermatodea_contig10454:1273..1545Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10454 1274..1545 +
1694079057.3223624-UTR-S-dermatodea_contig10454:1273..15451694079057.3223624-UTR-S-dermatodea_contig10454:1273..1545Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10454 1274..1545 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924158.0819323-CDS-S-dermatodea_contig10454:1545..18871622924158.0819323-CDS-S-dermatodea_contig10454:1545..1887Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10454 1546..1887 +
1694079057.3334713-CDS-S-dermatodea_contig10454:1545..18871694079057.3334713-CDS-S-dermatodea_contig10454:1545..1887Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10454 1546..1887 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10454.325.1prot_S-dermatodea_contig10454.325.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10454 1546..1887 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10454.325.1

>prot_S-dermatodea_contig10454.325.1 ID=prot_S-dermatodea_contig10454.325.1|Name=mRNA_S-dermatodea_contig10454.325.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=114bp
MCGPEAWMNGADAWYFVHSSGRHCPDVHTALAGHVISSHGTSEPRRGDKL
NEPQQPRASAAIGTTNERLLQAVKRSTLLNTAVVALRRLFIYYAAFSVAI
SGAAVPRDRDAGR*
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mRNA from alignment at S-dermatodea_contig10454:1274..1887+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10454.325.1 ID=mRNA_S-dermatodea_contig10454.325.1|Name=mRNA_S-dermatodea_contig10454.325.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=614bp|location=Sequence derived from alignment at S-dermatodea_contig10454:1274..1887+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGGCACGATTCTTTCCAAGCCCGCACCGCTGGCAAACGCGCCAGACGGC
TGGACCTGGGGGCCGGGTGCATATTGAACCTCAACGCGCTATCCCGAACA
AGTATAAATGCCACCAACTTCACATCCTCCAGACGTCTGGCTCACACGTC
GATACTCCCTGGCCCATACCTCTGTGAGTCCAGATGGCTGGTCCATACTC
CCACACAGTGTACGTCTTGGCCGAACACGTATGCATGCACACGCCTGGGC
CAGACGCCCTTACGCATGGTGAATGTGTGGCCCAGAGGCATGGATGAATG
GGGCAGACGCATGGTATTTCGTGCATAGTTCTGGCCGACACTGTCCAGAC
GTGCACACAGCTCTGGCTGGGCACGTGATAAGTTCGCACGGTACTTCTGA
ACCCAGGCGGGGCGATAAATTAAACGAACCGCAACAGCCCCGCGCCTCCG
CCGCCATCGGCACCACCAACGAGCGACTGCTTCAGGCCGTAAAAAGGAGT
ACTCTCTTAAACACGGCCGTCGTAGCCCTTCGTCGTTTATTCATTTATTA
CGCCGCTTTTTCTGTTGCAATCTCAGGCGCCGCTGTGCCTCGAGACCGCG
ATGCAGGGCGTTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig10454:1274..1887+

>mRNA_S-dermatodea_contig10454.325.1 ID=mRNA_S-dermatodea_contig10454.325.1|Name=mRNA_S-dermatodea_contig10454.325.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at S-dermatodea_contig10454:1274..1887+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTGTGGCCCAGAGGCATGGATGAATGGGGCAGACGCATGGTATTTCGT
GCATAGTTCTGGCCGACACTGTCCAGACGTGCACACAGCTCTGGCTGGGC
ACGTGATAAGTTCGCACGGTACTTCTGAACCCAGGCGGGGCGATAAATTA
AACGAACCGCAACAGCCCCGCGCCTCCGCCGCCATCGGCACCACCAACGA
GCGACTGCTTCAGGCCGTAAAAAGGAGTACTCTCTTAAACACGGCCGTCG
TAGCCCTTCGTCGTTTATTCATTTATTACGCCGCTTTTTCTGTTGCAATC
TCAGGCGCCGCTGTGCCTCGAGACCGCGATGCAGGGCGTTAAATGTGTGG
CCCAGAGGCATGGATGAATGGGGCAGACGCATGGTATTTCGTGCATAGTT
CTGGCCGACACTGTCCAGACGTGCACACAGCTCTGGCTGGGCACGTGATA
AGTTCGCACGGTACTTCTGAACCCAGGCGGGGCGATAAATTAAACGAACC
GCAACAGCCCCGCGCCTCCGCCGCCATCGGCACCACCAACGAGCGACTGC
TTCAGGCCGTAAAAAGGAGTACTCTCTTAAACACGGCCGTCGTAGCCCTT
CGTCGTTTATTCATTTATTACGCCGCTTTTTCTGTTGCAATCTCAGGCGC
CGCTGTGCCTCGAGACCGCGATGCAGGGCGTTAA
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