mRNA_S-dermatodea_contig10451.323.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10451.323.1
Unique NamemRNA_S-dermatodea_contig10451.323.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10451.323.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10451contigS-dermatodea_contig10451:5362..5705 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size345
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924158.0399413-CDS-S-dermatodea_contig10451:5361..57031622924158.0399413-CDS-S-dermatodea_contig10451:5361..5703Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10451 5362..5703 +
1694079057.3061757-CDS-S-dermatodea_contig10451:5361..57031694079057.3061757-CDS-S-dermatodea_contig10451:5361..5703Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10451 5362..5703 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10451.323.1prot_S-dermatodea_contig10451.323.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10451 5362..5703 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10451.323.1

>prot_S-dermatodea_contig10451.323.1 ID=prot_S-dermatodea_contig10451.323.1|Name=mRNA_S-dermatodea_contig10451.323.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=114bp
GNDIGSDDAYRGHACRGNAYRRDAYTGDACRRGDYRRAAYSCDSCRGDTY
RGDAYRGDTDRGDAYRGDAHKGAAYRRDAYTGDACRRGALGGDAYDSAYG
SACLGDVLGRAHAG
back to top

mRNA from alignment at S-dermatodea_contig10451:5362..5705+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10451.323.1 ID=mRNA_S-dermatodea_contig10451.323.1|Name=mRNA_S-dermatodea_contig10451.323.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=344bp|location=Sequence derived from alignment at S-dermatodea_contig10451:5362..5705+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCAATGATATCGGCAGTGACGATGCCTACAGGGGTCATGCCTGCAGGGG
CAATGCCTACAGGCGCGATGCCTACACGGGTGATGCCTGCAGGCGCGGTG
ACTACAGGAGAGCTGCCTACAGTTGCGATTCCTGCAGGGGTGATACGTAC
AGGGGCGATGCCTACAGGGGAGATACCGACAGGGGCGATGCCTACAGGGG
CGATGCCCACAAGGGTGCTGCCTACAGGCGCGATGCCTACACGGGTGATG
CCTGCAGGCGCGGTGCCCTCGGTGGCGATGCCTACGACTCTGCCTACGGC
TCTGCCTGCCTCGGCGATGTCCTTGGCCGCGCCCACGCAGGAGC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig10451:5362..5705+

>mRNA_S-dermatodea_contig10451.323.1 ID=mRNA_S-dermatodea_contig10451.323.1|Name=mRNA_S-dermatodea_contig10451.323.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at S-dermatodea_contig10451:5362..5705+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCAATGATATCGGCAGTGACGATGCCTACAGGGGTCATGCCTGCAGGGG
CAATGCCTACAGGCGCGATGCCTACACGGGTGATGCCTGCAGGCGCGGTG
ACTACAGGAGAGCTGCCTACAGTTGCGATTCCTGCAGGGGTGATACGTAC
AGGGGCGATGCCTACAGGGGAGATACCGACAGGGGCGATGCCTACAGGGG
CGATGCCCACAAGGGTGCTGCCTACAGGCGCGATGCCTACACGGGTGATG
CCTGCAGGCGCGGTGCCCTCGGTGGCGATGCCTACGACTCTGCCTACGGC
TCTGCCTGCCTCGGCGATGTCCTTGGCCGCGCCCACGCAGGAGGCAATGA
TATCGGCAGTGACGATGCCTACAGGGGTCATGCCTGCAGGGGCAATGCCT
ACAGGCGCGATGCCTACACGGGTGATGCCTGCAGGCGCGGTGACTACAGG
AGAGCTGCCTACAGTTGCGATTCCTGCAGGGGTGATACGTACAGGGGCGA
TGCCTACAGGGGAGATACCGACAGGGGCGATGCCTACAGGGGCGATGCCC
ACAAGGGTGCTGCCTACAGGCGCGATGCCTACACGGGTGATGCCTGCAGG
CGCGGTGCCCTCGGTGGCGATGCCTACGACTCTGCCTACGGCTCTGCCTG
CCTCGGCGATGTCCTTGGCCGCGCCCACGCAGGA
back to top