mRNA_S-dermatodea_contig10450.321.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig10450.321.1 vs. uniprot
Match: D8LCK6_ECTSI (Protein transport protein SEC23 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCK6_ECTSI) HSP 1 Score: 185 bits (470), Expect = 7.790e-53 Identity = 89/100 (89.00%), Postives = 94/100 (94.00%), Query Frame = 1
Query: 1 RMRATTVCGGWHSDANSLDPLVRGYDQEAAAVLMARVAVHRTETEEVADIMRWLDRSLIRLSAKFAQYEKDKPETFRLAQEFSMYPQYMFHLRRSQFLQV 300
R+RATTVCGGWHSD N L PLVRGYDQ+AAAVLMAR+AVHRTETEEVADIMRWLDRSLIRL AKFAQY KDKPE+FRLA EFSMYPQYMFHLRRSQFLQ+
Sbjct: 516 RLRATTVCGGWHSDPNDLGPLVRGYDQQAAAVLMARIAVHRTETEEVADIMRWLDRSLIRLCAKFAQYTKDKPESFRLASEFSMYPQYMFHLRRSQFLQL 615
BLAST of mRNA_S-dermatodea_contig10450.321.1 vs. uniprot
Match: A0A835YT42_9STRA (Protein transport protein SEC23 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT42_9STRA) HSP 1 Score: 159 bits (402), Expect = 2.460e-43 Identity = 75/99 (75.76%), Postives = 88/99 (88.89%), Query Frame = 1
Query: 1 RMRATTVCGGWHSDANSLDPLVRGYDQEAAAVLMARVAVHRTETEEVADIMRWLDRSLIRLSAKFAQYEKDKPETFRLAQEFSMYPQYMFHLRRSQFLQ 297
R+R+TT+CG WHSDA SL P+ +DQ AAAVL ARVAV+RTETE+VADIMRWLDRSLIRL AKFA+Y KD+P +FRL++EFSMYPQ+MFHLRRSQFLQ
Sbjct: 524 RLRSTTICGLWHSDAQSLQPIAASFDQAAAAVLTARVAVYRTETEDVADIMRWLDRSLIRLCAKFAEYRKDEPNSFRLSREFSMYPQFMFHLRRSQFLQ 622
BLAST of mRNA_S-dermatodea_contig10450.321.1 vs. uniprot
Match: A0A7S2W7G0_9STRA (Protein transport protein SEC23 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W7G0_9STRA) HSP 1 Score: 154 bits (389), Expect = 1.410e-41 Identity = 73/100 (73.00%), Postives = 85/100 (85.00%), Query Frame = 1
Query: 1 RMRATTVCGGWHSDANSLDPLVRGYDQEAAAVLMARVAVHRTETEEVADIMRWLDRSLIRLSAKFAQYEKDKPETFRLAQEFSMYPQYMFHLRRSQFLQV 300
R+R+TT+CGGWHSD P+ R +DQEAAAVLMARVAV RT TEEVADI+RW+DRSLIRL AKFA Y KD+P +FRL EFS+YPQ+MFHLRRSQFLQ+
Sbjct: 502 RLRSTTLCGGWHSDPADSSPIGRSFDQEAAAVLMARVAVFRTSTEEVADILRWVDRSLIRLCAKFADYRKDEPNSFRLPPEFSIYPQFMFHLRRSQFLQL 601
BLAST of mRNA_S-dermatodea_contig10450.321.1 vs. uniprot
Match: A0A6U3YQE8_9STRA (Protein transport protein SEC23 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3YQE8_9STRA) HSP 1 Score: 154 bits (388), Expect = 2.030e-41 Identity = 70/100 (70.00%), Postives = 85/100 (85.00%), Query Frame = 1
Query: 1 RMRATTVCGGWHSDANSLDPLVRGYDQEAAAVLMARVAVHRTETEEVADIMRWLDRSLIRLSAKFAQYEKDKPETFRLAQEFSMYPQYMFHLRRSQFLQV 300
R+RATT+CG WH+D + PL R +DQE AAVLMAR+A HRT+TEEV DI+RWLDRSLIRL AKFA+Y KD+ +FRL+ EFS+YPQ+MFHLRRSQFLQ+
Sbjct: 515 RLRATTLCGPWHNDTKDMSPLARSFDQETAAVLMARIATHRTDTEEVPDILRWLDRSLIRLCAKFAEYRKDEAASFRLSPEFSIYPQFMFHLRRSQFLQL 614
BLAST of mRNA_S-dermatodea_contig10450.321.1 vs. uniprot
Match: A0A7S1G6C9_9STRA (Protein transport protein SEC23 n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G6C9_9STRA) HSP 1 Score: 150 bits (378), Expect = 5.220e-41 Identity = 70/100 (70.00%), Postives = 83/100 (83.00%), Query Frame = 1
Query: 1 RMRATTVCGGWHSDANSLDPLVRGYDQEAAAVLMARVAVHRTETEEVADIMRWLDRSLIRLSAKFAQYEKDKPETFRLAQEFSMYPQYMFHLRRSQFLQV 300
R+R TTV G WH+DA++L P+ +DQEAAAVLMAR+AVHRTETE+ DI+RWLDRSLIRL AKFA Y KD P +FRL+ FS YPQ+MFHLRRSQFLQ+
Sbjct: 233 RLRVTTVAGPWHTDASTLAPVASSFDQEAAAVLMARIAVHRTETEDTLDILRWLDRSLIRLCAKFADYHKDDPGSFRLSPSFSFYPQFMFHLRRSQFLQI 332
BLAST of mRNA_S-dermatodea_contig10450.321.1 vs. uniprot
Match: A0A8J2WHU7_9STRA (Protein transport protein SEC23 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WHU7_9STRA) HSP 1 Score: 149 bits (377), Expect = 6.300e-40 Identity = 70/100 (70.00%), Postives = 83/100 (83.00%), Query Frame = 1
Query: 1 RMRATTVCGGWHSDANSLDPLVRGYDQEAAAVLMARVAVHRTETEEVADIMRWLDRSLIRLSAKFAQYEKDKPETFRLAQEFSMYPQYMFHLRRSQFLQV 300
R+R TT+CG W D + P+ R +DQEAAAVLMARVAVHRTETEEVADI+RW+DRSLIRL AKFA Y KD P +FRL EFS+YPQ++F+LRRSQFLQ+
Sbjct: 500 RLRCTTLCGAWQPDPSDASPVARSFDQEAAAVLMARVAVHRTETEEVADILRWVDRSLIRLCAKFADYRKDDPSSFRLPHEFSVYPQFVFNLRRSQFLQL 599
BLAST of mRNA_S-dermatodea_contig10450.321.1 vs. uniprot
Match: F0XWM5_AURAN (Protein transport protein SEC23 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XWM5_AURAN) HSP 1 Score: 147 bits (372), Expect = 3.110e-39 Identity = 69/100 (69.00%), Postives = 83/100 (83.00%), Query Frame = 1
Query: 1 RMRATTVCGGWHSDANSLDPLVRGYDQEAAAVLMARVAVHRTETEEVADIMRWLDRSLIRLSAKFAQYEKDKPETFRLAQEFSMYPQYMFHLRRSQFLQV 300
R+R+TT+CG W D N P+ R +DQEAAAVLMARVAVHRTETEEV DI+RW+DRSLIRL AKFA Y KD P +FRL EF++YPQ++F+LRRSQFLQ+
Sbjct: 506 RLRSTTLCGAWQPDPNDSAPVARSFDQEAAAVLMARVAVHRTETEEVPDILRWVDRSLIRLCAKFADYRKDDPSSFRLPHEFAVYPQFVFNLRRSQFLQL 605
BLAST of mRNA_S-dermatodea_contig10450.321.1 vs. uniprot
Match: A0A7S2JSI2_9STRA (Protein transport protein SEC23 n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JSI2_9STRA) HSP 1 Score: 142 bits (357), Expect = 2.180e-38 Identity = 64/100 (64.00%), Postives = 81/100 (81.00%), Query Frame = 1
Query: 1 RMRATTVCGGWHSDANSLDPLVRGYDQEAAAVLMARVAVHRTETEEVADIMRWLDRSLIRLSAKFAQYEKDKPETFRLAQEFSMYPQYMFHLRRSQFLQV 300
R+R+TT+CG WHSD N + P+ +DQEAAA+L AR+AVHRTETE+V D++ W+DRSLIRL+AKFA Y D P +FRL FS+YPQ+MFHLRRS FLQ+
Sbjct: 167 RVRSTTLCGPWHSDPNDVTPIRASFDQEAAAILTARLAVHRTETEDVGDVLMWVDRSLIRLAAKFADYRPDDPSSFRLPHAFSIYPQFMFHLRRSPFLQL 266
BLAST of mRNA_S-dermatodea_contig10450.321.1 vs. uniprot
Match: A0A7S3HLG5_9STRA (Protein transport protein SEC23 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HLG5_9STRA) HSP 1 Score: 143 bits (360), Expect = 3.050e-38 Identity = 67/98 (68.37%), Postives = 79/98 (80.61%), Query Frame = 1
Query: 4 MRATTVCGGWHSDANSLDPLVRGYDQEAAAVLMARVAVHRTETEEVADIMRWLDRSLIRLSAKFAQYEKDKPETFRLAQEFSMYPQYMFHLRRSQFLQ 297
+R TTVCGGWHSD P+ +DQEAA VLMAR+AVHR TE++AD+ RWLDRSLIRL+AKFA Y KD +FRL QEFS+YPQ+MFHLRRS+FLQ
Sbjct: 264 LRVTTVCGGWHSDPADHAPIAASFDQEAATVLMARLAVHRCLTEDIADVQRWLDRSLIRLAAKFANYRKDDAASFRLPQEFSIYPQFMFHLRRSKFLQ 361
BLAST of mRNA_S-dermatodea_contig10450.321.1 vs. uniprot
Match: A0A7S1BQW7_9STRA (Protein transport protein SEC23 n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BQW7_9STRA) HSP 1 Score: 144 bits (364), Expect = 4.000e-38 Identity = 66/100 (66.00%), Postives = 83/100 (83.00%), Query Frame = 1
Query: 1 RMRATTVCGGWHSDANSLDPLVRGYDQEAAAVLMARVAVHRTETEEVADIMRWLDRSLIRLSAKFAQYEKDKPETFRLAQEFSMYPQYMFHLRRSQFLQV 300
R+R+TT+CG WHSD N +P+ +DQEAAAVL AR+AV+RTETE+V D++RW+DRSLIRL+ KFA Y D P +FRL EFS+YPQ+MFHLRRSQFLQ+
Sbjct: 520 RLRSTTLCGPWHSDPNDHNPIKTSFDQEAAAVLTARLAVYRTETEDVGDVLRWVDRSLIRLATKFADYIPDDPNSFRLVPEFSLYPQFMFHLRRSQFLQL 619 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10450.321.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig10450.321.1 >prot_S-dermatodea_contig10450.321.1 ID=prot_S-dermatodea_contig10450.321.1|Name=mRNA_S-dermatodea_contig10450.321.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=100bp MRATTVCGGWHSDANSLDPLVRGYDQEAAAVLMARVAVHRTETEEVADIMback to top mRNA from alignment at S-dermatodea_contig10450:245..1401- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig10450.321.1 ID=mRNA_S-dermatodea_contig10450.321.1|Name=mRNA_S-dermatodea_contig10450.321.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1157bp|location=Sequence derived from alignment at S-dermatodea_contig10450:245..1401- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig10450:245..1401- >mRNA_S-dermatodea_contig10450.321.1 ID=mRNA_S-dermatodea_contig10450.321.1|Name=mRNA_S-dermatodea_contig10450.321.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at S-dermatodea_contig10450:245..1401- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |