mRNA_S-dermatodea_contig10442.320.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10442.320.1
Unique NamemRNA_S-dermatodea_contig10442.320.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10442.320.1 vs. uniprot
Match: A0A6H5L0S8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0S8_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.280e-9
Identity = 45/83 (54.22%), Postives = 53/83 (63.86%), Query Frame = -2 
Query:   39 DRAPEKGARILDSSFDITRSSLLRASTTLESIAPLDDSTVLSLSFQSRAGGSVPGELFADVGLSPSDEPSC--RFGAC-PPQR 278
            DR+   G   +DS  D+TRSS+LRAS+TL +IAPLDD T   LS+ SR G S  GELFAD  L  S   S   R+ AC PPQR
Sbjct:  996 DRSSGSGPLFMDSFADVTRSSVLRASSTLNTIAPLDD-TGPPLSYSSRIGVSFAGELFADSRLRASSGSSRAPRYDACTPPQR 1077
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BLAST of mRNA_S-dermatodea_contig10442.320.1 vs. uniprot
Match: D8LQ68_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ68_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 3.890e-8
Identity = 43/83 (51.81%), Postives = 52/83 (62.65%), Query Frame = -2 
Query:   39 DRAPEKGARILDSSFDITRSSLLRASTTLESIAPLDDSTVLSLSFQSRAGGSVPGELFADVGLSPSDEP--SCRFGACP-PQR 278
            DR+   G   +DS  D+TRSS+LRAS+TL +IAPLDD T   LS+ SR G S  GELFAD  L  S     + R+ AC  PQR
Sbjct: 1025 DRSSGSGPLFMDSFADVTRSSVLRASSTLNTIAPLDD-TGPPLSYSSRIGVSFAGELFADSRLRASSGSYRAPRYDACATPQR 1106
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10442.320.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L0S8_9PHAE1.280e-954.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQ68_ECTSI3.890e-851.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10442contigS-dermatodea_contig10442:2144..2518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size375
Cds size375
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924157.9186718-CDS-S-dermatodea_contig10442:2143..25181622924157.9186718-CDS-S-dermatodea_contig10442:2143..2518Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10442 2144..2518 +
1694079057.2522168-CDS-S-dermatodea_contig10442:2143..25181694079057.2522168-CDS-S-dermatodea_contig10442:2143..2518Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10442 2144..2518 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10442.320.1prot_S-dermatodea_contig10442.320.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10442 2144..2518 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10442.320.1

>prot_S-dermatodea_contig10442.320.1 ID=prot_S-dermatodea_contig10442.320.1|Name=mRNA_S-dermatodea_contig10442.320.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=125bp
GGKVKPVPCRTWRRCGGQAPKRQDGSSDGDSPTSAKSSPGTDPPARDWND
KERTVESSSGAILSRVVDALSSEERVMSNEESKMRAPFSGALSAGALELC
VPSEQEPFPPRSRSAPPNLPALLL*
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mRNA from alignment at S-dermatodea_contig10442:2144..2518+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10442.320.1 ID=mRNA_S-dermatodea_contig10442.320.1|Name=mRNA_S-dermatodea_contig10442.320.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=375bp|location=Sequence derived from alignment at S-dermatodea_contig10442:2144..2518+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCGGAAAAGTTAAGCCGGTGCCGTGTCGGACATGGCGGCGTTGCGGAGG
GCAAGCCCCGAAGCGACAGGATGGTTCGTCGGATGGCGATAGCCCGACAT
CGGCGAAGAGCTCTCCGGGAACCGATCCGCCCGCGCGAGACTGGAACGAC
AAGGAAAGGACGGTTGAATCATCCAGCGGTGCGATACTTTCGAGGGTTGT
AGATGCCCTGAGCAGCGAGGAGCGGGTGATGTCAAACGAAGAATCCAAGA
TGCGAGCCCCCTTCTCGGGAGCCCTGTCGGCTGGCGCCCTCGAACTCTGC
GTTCCCTCGGAGCAAGAACCATTTCCCCCGAGATCTAGATCGGCACCCCC
GAATCTTCCCGCCCTCTTGCTCTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig10442:2144..2518+

>mRNA_S-dermatodea_contig10442.320.1 ID=mRNA_S-dermatodea_contig10442.320.1|Name=mRNA_S-dermatodea_contig10442.320.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at S-dermatodea_contig10442:2144..2518+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCGGAAAAGTTAAGCCGGTGCCGTGTCGGACATGGCGGCGTTGCGGAGG
GCAAGCCCCGAAGCGACAGGATGGTTCGTCGGATGGCGATAGCCCGACAT
CGGCGAAGAGCTCTCCGGGAACCGATCCGCCCGCGCGAGACTGGAACGAC
AAGGAAAGGACGGTTGAATCATCCAGCGGTGCGATACTTTCGAGGGTTGT
AGATGCCCTGAGCAGCGAGGAGCGGGTGATGTCAAACGAAGAATCCAAGA
TGCGAGCCCCCTTCTCGGGAGCCCTGTCGGCTGGCGCCCTCGAACTCTGC
GTTCCCTCGGAGCAAGAACCATTTCCCCCGAGATCTAGATCGGCACCCCC
GAATCTTCCCGCCCTCTTGCTCTGAGGCGGAAAAGTTAAGCCGGTGCCGT
GTCGGACATGGCGGCGTTGCGGAGGGCAAGCCCCGAAGCGACAGGATGGT
TCGTCGGATGGCGATAGCCCGACATCGGCGAAGAGCTCTCCGGGAACCGA
TCCGCCCGCGCGAGACTGGAACGACAAGGAAAGGACGGTTGAATCATCCA
GCGGTGCGATACTTTCGAGGGTTGTAGATGCCCTGAGCAGCGAGGAGCGG
GTGATGTCAAACGAAGAATCCAAGATGCGAGCCCCCTTCTCGGGAGCCCT
GTCGGCTGGCGCCCTCGAACTCTGCGTTCCCTCGGAGCAAGAACCATTTC
CCCCGAGATCTAGATCGGCACCCCCGAATCTTCCCGCCCTCTTGCTCTGA
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