mRNA_S-dermatodea_contig10441.319.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10441.319.1
Unique NamemRNA_S-dermatodea_contig10441.319.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10441.319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10441contigS-dermatodea_contig10441:1154..2876 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size281
Cds size279
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924157.8798976-CDS-S-dermatodea_contig10441:1153..12531622924157.8798976-CDS-S-dermatodea_contig10441:1153..1253Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10441 1154..1253 -
1694079057.2361267-CDS-S-dermatodea_contig10441:1153..12531694079057.2361267-CDS-S-dermatodea_contig10441:1153..1253Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10441 1154..1253 -
1622924157.8896348-CDS-S-dermatodea_contig10441:2697..28761622924157.8896348-CDS-S-dermatodea_contig10441:2697..2876Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10441 2698..2876 -
1694079057.2440765-CDS-S-dermatodea_contig10441:2697..28761694079057.2440765-CDS-S-dermatodea_contig10441:2697..2876Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10441 2698..2876 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10441.319.1prot_S-dermatodea_contig10441.319.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10441 1154..2876 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10441.319.1

>prot_S-dermatodea_contig10441.319.1 ID=prot_S-dermatodea_contig10441.319.1|Name=mRNA_S-dermatodea_contig10441.319.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=93bp
MEDAASASLSSMVEVRDIDGQGRGCFAKTGCVIQAGTPLLEGCRPIVWVP
NDAREDSSCRQCLQPCVDTTTTSSPCPTCRRSVLCSSCSTATE
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mRNA from alignment at S-dermatodea_contig10441:1154..2876-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10441.319.1 ID=mRNA_S-dermatodea_contig10441.319.1|Name=mRNA_S-dermatodea_contig10441.319.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1723bp|location=Sequence derived from alignment at S-dermatodea_contig10441:1154..2876- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAAGATGCTGCTAGTGCATCCTTGTCGAGCATGGTCGAGGTTCGGGA
CATCGACGGGCAGGGAAGGGGGTGCTTTGCGAAAACTGGCTGTGTTATCC
AGGCAGGAACTCCCCTGCTCGAGGGCTGCAGGCCGATCGTGTGGGTCCCT
AACGACGCTAGAGAGGACAGCAGCTGCAGGTCAGCGACGCGGCCGGTTTC
CCCGTTTCCACTGATCTAGGAAGCTGCTAGAGAGAGAGTGTGCCTGTTGG
AGATATGGGGCTCTCGTGTTGAGACAGGAGTTGGTTTTGCGCTGCTGAGG
GTATGTGCGGTTGAGTTTTTTTTTCTGTCCAGAAGGCAGAGCCAGACTCT
GTGCGCATTGCGGCGCAATAACCATTGAGCTTTTCGACCAATCAACGACT
GAGAACTGAGAACTGAGAACGAGAGTTTTTTATAAAACGAGAGACTTCAC
GATCCGACGGCATGCATGGGATCAGATGATTTGACGCGCGGACCGTGCCA
GCAGCGAACCTGCACGGATACATCGGTGTTTAGTTCACCTTGGGTCGAAC
GTTGTGTGTACATGGTAAAGGCGACTATGTACGAGTACGCAACCGTTGGA
CAGGGTATGCACACCATTCGAACATGAACCTGCTATTTACTTGTACAAGT
ATGTGCAAGTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTGTTTGTTCCTTCTGTTGTCACTAGGGATGGTTCTTCACT
TTCCTACTTTCCCCTTTTCTCCCTCTNNNNNNNNNNAAACATTGATTAAT
ATATTTTTTATTTTTATTTTTAGAAGTATTTGTATTTTTTTTTTTTTTTT
TTTTTTTTTTTCGCACACATACGATAGACTTGCTTTTCCGAGGTAGGTCC
ATCTGTGGTCACAAGGGATGGATCGTTCCATCTATCTTATCCCCGGTTCT
CACCTTTGATTTTTATCGCGCATTTGGGTTCGGCACTTCCGCAGCTGGCT
CGCCGATTTCTCGGATTTTGCTTACTCACGCTCTCTCGCTTTCCGCTTGT
AGATAATAATATATCTTGTCTGTTGCTCGCTGAAGATTCTTGTGAAAAAC
ACAGCAAAAGTATGTACTTACAAGCACTTGTACTGGTACTGGACAGCTCA
CCAAAGGGCGAAGGGACACTGCGCAAATAACAGATATATGGTTCAACTAA
CTGCTATGTGCTTGTGTTTTTCTGTACGGAGCGTTTTCGGCCTTCTCTGC
TTCGATTTTCCATACTATTTACTGCACGGGCGTAGCCGTGGCTACCTACT
GGTCACTACAAAAACCCCAGCACGTGTTCAACCGACCGTCCACCCTGTGA
CCCTGCGACCGCCACCCCCCCCCCCCCACTCCCGTGAAACATGTTATTTC
GAAAACATGAAGCGAACATTGGGGTCCAACTTTTTTTAAGGGGGAAAATA
GAGTCCAAGCTACCATACGCGCATGGAGGGTTACGTTATGTATGATGCAT
CATATGGTGGTATGGGATCACCGTGGAAATGTATTTGTCTGGGGGAAATC
GTGGCATGTAACTCTGACCCCCCCGTCCCCCCGCCGCGAAAATAATAAAT
ACGAACGGTTTCCCTCATCGCAGGCAATGCCTCCAGCCTTGCGTCGACAC
TACCACCACCTCCTCGCCGTGTCCTACTTGCCGGCGATCGGTGTTGTGCT
CCTCGTGCTCGACCGCGACCGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10441:1154..2876-

>mRNA_S-dermatodea_contig10441.319.1 ID=mRNA_S-dermatodea_contig10441.319.1|Name=mRNA_S-dermatodea_contig10441.319.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at S-dermatodea_contig10441:1154..2876- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAAGATGCTGCTAGTGCATCCTTGTCGAGCATGGTCGAGGTTCGGGA
CATCGACGGGCAGGGAAGGGGGTGCTTTGCGAAAACTGGCTGTGTTATCC
AGGCAGGAACTCCCCTGCTCGAGGGCTGCAGGCCGATCGTGTGGGTCCCT
AACGACGCTAGAGAGGACAGCAGCTGCAGATGGAAGATGCTGCTAGTGCA
TCCTTGTCGAGCATGGTCGAGGTTCGGGACATCGACGGGCAGGGAAGGGG
GTGCTTTGCGAAAACTGGCTGTGTTATCCAGGCAGGAACTCCCCTGCTCG
AGGGCTGCAGGCCGATCGTGTGGGTCCCTAACGACGCTAGAGAGGACAGC
AGCTGCAGGCAATGCCTCCAGCCTTGCGTCGACACTACCACCACCTCCTC
GCCGTGTCCTACTTGCCGGCGATCGGTGTTGTGCTCCTCGTGCTCGACCG
CGACCGAGGCAATGCCTCCAGCCTTGCGTCGACACTACCACCACCTCCTC
GCCGTGTCCTACTTGCCGGCGATCGGTGTTGTGCTCCTCGTGCTCGACCG
CGACCGAG
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