mRNA_S-dermatodea_contig10431.315.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10431.315.1
Unique NamemRNA_S-dermatodea_contig10431.315.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10431.315.1 vs. uniprot
Match: A0A6H5JWN2_9PHAE (Methyltransf_25 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JWN2_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 2.050e-32
Identity = 60/74 (81.08%), Postives = 68/74 (91.89%), Query Frame = 1 
Query:   49 WDEDLPTTVGRAAFSSLKGKAREMMVKGAEKRGLDWTGIVETLQGAENWEKLRTDIIA-NSNVVVPEYYLKQFH 267
            W++D  TTVGRAAF+SLK KAR+MMVKGAEKRGLDWTGIVE L+GAENWEK RT+I+A N+NVVVPEYYLKQFH
Sbjct:   93 WNDDFGTTVGRAAFASLKNKARDMMVKGAEKRGLDWTGIVEGLKGAENWEKRRTEILAKNTNVVVPEYYLKQFH 166
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BLAST of mRNA_S-dermatodea_contig10431.315.1 vs. uniprot
Match: UPI001ABBC4BC (methyltransferase domain-containing protein n=3 Tax=Aetokthonos hydrillicola TaxID=1550245 RepID=UPI001ABBC4BC)

HSP 1 Score: 50.4 bits (119), Expect = 3.270e-5
Identity = 28/58 (48.28%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:  100 KGKAREMMVKGAEKRGLDWTGIVETLQGAENWEKLRTDI--IANSNVVVPEYYLKQFH 267
            K +AR+MM+K AEK G++WT  V+ L+ A +WE   T+I  + N N+  PEYYL+ FH
Sbjct:   30 KHQARQMMIKRAEKIGINWTQQVQMLK-AHDWE---TEIAKVQNPNLSYPEYYLRPFH 83
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10431.315.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JWN2_9PHAE2.050e-3281.08Methyltransf_25 domain-containing protein n=2 Tax=... [more]
UPI001ABBC4BC3.270e-548.28methyltransferase domain-containing protein n=3 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10431contigS-dermatodea_contig10431:4671..6717 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.6
Seed ortholog evalue1.2e-26
Seed eggNOG ortholog2880.D8LD42
EggNOG free text desc.Methyltransferase domain
EggNOG OGs2B2D0@1,2S0CH@2759
Ec32 ortholog descriptionSAM-dependent methyltransferases
Ec32 orthologEc-11_000370.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size269
Cds size267
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924157.6710944-CDS-S-dermatodea_contig10431:4670..47571622924157.6710944-CDS-S-dermatodea_contig10431:4670..4757Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10431 4671..4757 -
1694079057.129339-CDS-S-dermatodea_contig10431:4670..47571694079057.129339-CDS-S-dermatodea_contig10431:4670..4757Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10431 4671..4757 -
1622924157.6818867-CDS-S-dermatodea_contig10431:6537..67171622924157.6818867-CDS-S-dermatodea_contig10431:6537..6717Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10431 6538..6717 -
1694079057.1402016-CDS-S-dermatodea_contig10431:6537..67171694079057.1402016-CDS-S-dermatodea_contig10431:6537..6717Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10431 6538..6717 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10431.315.1prot_S-dermatodea_contig10431.315.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10431 4671..6717 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10431.315.1

>prot_S-dermatodea_contig10431.315.1 ID=prot_S-dermatodea_contig10431.315.1|Name=mRNA_S-dermatodea_contig10431.315.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=89bp
MVLTGLRSSQRGPKRAWDEDLPTTVGRAAFSSLKGKAREMMVKGAEKRGL
DWTGIVETLQGAENWEKLRTDIIANSNVVVPEYYLKQFH
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mRNA from alignment at S-dermatodea_contig10431:4671..6717-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10431.315.1 ID=mRNA_S-dermatodea_contig10431.315.1|Name=mRNA_S-dermatodea_contig10431.315.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2047bp|location=Sequence derived from alignment at S-dermatodea_contig10431:4671..6717- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTTCTGACCGGTTTGCGCTCTAGCCAGAGGGGGCCAAAGCGAGCATG
GGATGAAGATCTCCCTACGACAGTTGGTCGGGCTGCGTTTTCGTCTCTAA
AAGGCAAGGCGCGAGAGATGATGGTCAAGGGTGCGGAGAAGCGTGGATTG
GACTGGACAGGCATCGTCGAGACGCTGCAGGTATGCCCCTTACGCGCCGT
CTTGGCCGTGCGATAGCAGCCAGGGGTGCGGGAAAGCTAAGGGAAGGGAG
GATCTCCGTTGCGGCGATTATCTGACATAAAGTATACCTGGTATATGTTA
AATAATTGGTCGACTTAGTGCGGTGGTTTGTATTAATTGGCGCGCTTGTT
TCTGCTTCAATCAGATCATCTTGCTATTAATAGTGCCTCTCTTTACAGCT
TTCCACCGGCTTTCTTAGTGTTTTTTCTAGTCACTGATGGCGACGACGGC
AGGTCACAGCGAATGGCTTCAGTGCAGTACTACTCTCCCCTCATATCAGA
TCGTATCATAAAGCTCTGTGTTCCCGTTCGATATCGCGCTGGTGTTATGC
CGGATTCAGATCTATATACATACGTTAGCGGCGACCAACGCGTCGGTGAC
AACGTGATAAGTTGTTTTAACCCTACCGCTTATTCTGTTGACAGAGCCAT
GTATTAGGTGGCTAGATATGGGCCAGGTTTGTTTGTGAATGAGGCTGCCA
TTGTGTCACGGGCGGGGGCGGTTTGTCCCCTGTACGCGAGGAAGGTGCTG
GGACGGGGAAGGGCGGGTTTGGTGAAATAAAGGGTACGTGGTAGGTGCTC
AAAAATGGAGTAGGGAGAACAGGCAGGCGCAAGCACTCACTCACTTGGTC
TAATGGTGCATTCGTTCATCACAGACCGATCCTACGCGCATCCAAAGCGT
TGGTGAGACCGTGTTGTTTTAAAACCTTCCACTTACTCTGTGGGCAGAGC
CGCGTGTTAGGCTATTATAGCTCGGGGCAAGCTTTGTGATTGCGGGGGGG
CGGGGGGGGGGGGGGACTAGGTGTTCAAAGCGCAGTAGGGTATTGATGGT
TTCTCATATTTTCGAATTCTTCTCCTATTAATATTATACTTGAAGTAGTA
CCTGGCCATATAGCGAGGTTTTCTTGCTATGTTGAGACGTTGTGCTTCAC
GGTTGCTGACACCTGCCTTTCTGCCGAACAAAATTAAATTATTTGCATAT
TATCGGCAGGACAATATCAACATATTATGTTGTAACGTCGTTGGAGGTAG
CGAGTCACTACTACGTAACGCGCCGCTGCTGAGGCTGCGTGAAACACAAA
GGTAGATATGTGCGTGTGTGTGCTCTGCTACGGCGCTGCTGCGGTAGGCT
TGTCACAGCCAAGCCAAGGCCAGCCTCGGGGACTGCTACAATTGTCCCGC
AATAAGCGTTAGAGCATGATTTTTGTTTGGGAAAGCAGTGCTGGCGTCAT
CCCCCGCCGACGCGCTTTCGCGTTCGCTCTGACTCGCTGTTTGATGGGCT
GAATTTTGCAGGCAATACCACCACTGTGAAAGTAGTACATTTTCCCCGTT
GCCACTTTTCTTATGACCGGGAACGCTATCTCGAGTTACAAATTCTGCCG
TCACGGTTAAACAGGTGCCGATCTTTGGCGGCGACGCCATCGCAAGTTCC
TATCCACCCCAGCTGGCCCCAGCCGCGGGGGTTTCCCGCGGGGGTATGAT
AAAATAGCCCGGTGCGCCGATCTTCCAAATAGCAGACAAAAGTACTTGCT
ACAAGTGTTACTATGATATATGTTTTATTGTATGATATAAACGAGCGCCA
TCGGGTCCGTGTTCAATAATATCTACCTGGTACATCAATTCTTCTTCTTG
ATATATTTACTCTACAGGTACACTAGACTATTTACATTCATGCACCCCGC
CCCCCCCCCCCCGATCGTTTCGTTGTTGGTTTTTCCCGGACGCTACGCTG
GCTGCTGCAGGGAGCAGAGAATTGGGAAAAGCTTAGAACAGACATAATCG
CCAACAGCAACGTGGTCGTCCCCGAGTACTACCTCAAGCAGTTTCAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig10431:4671..6717-

>mRNA_S-dermatodea_contig10431.315.1 ID=mRNA_S-dermatodea_contig10431.315.1|Name=mRNA_S-dermatodea_contig10431.315.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at S-dermatodea_contig10431:4671..6717- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTTCTGACCGGTTTGCGCTCTAGCCAGAGGGGGCCAAAGCGAGCATG
GGATGAAGATCTCCCTACGACAGTTGGTCGGGCTGCGTTTTCGTCTCTAA
AAGGCAAGGCGCGAGAGATGATGGTCAAGGGTGCGGAGAAGCGTGGATTG
GACTGGACAGGCATCGTCGAGACGCTGCAGATGGTTCTGACCGGTTTGCG
CTCTAGCCAGAGGGGGCCAAAGCGAGCATGGGATGAAGATCTCCCTACGA
CAGTTGGTCGGGCTGCGTTTTCGTCTCTAAAAGGCAAGGCGCGAGAGATG
ATGGTCAAGGGTGCGGAGAAGCGTGGATTGGACTGGACAGGCATCGTCGA
GACGCTGCAGGGAGCAGAGAATTGGGAAAAGCTTAGAACAGACATAATCG
CCAACAGCAACGTGGTCGTCCCCGAGTACTACCTCAAGCAGTTTCACGGA
GCAGAGAATTGGGAAAAGCTTAGAACAGACATAATCGCCAACAGCAACGT
GGTCGTCCCCGAGTACTACCTCAAGCAGTTTCAC
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