mRNA_S-dermatodea_contig10430.314.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10430.314.1
Unique NamemRNA_S-dermatodea_contig10430.314.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10430.314.1 vs. uniprot
Match: A0A6H5L4J9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4J9_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 5.640e-21
Identity = 45/84 (53.57%), Postives = 59/84 (70.24%), Query Frame = 1 
Query:   34 MRSMKIHQWRNRITHFCLKLAIGSVDIDMDDGEVRFKTTATFGTASNIKPILTNFMNFHVDFGKRYLQGFAAIKNHNASAETAM 285
            M S K+ Q    +T    ++A+GSVD+DM+DGEVR+KTTA FG A NIKPIL  F+++H   G RYL+ F AI++ N SAE AM
Sbjct:   71 MPSSKLAQTLLFVTLLNWEVAVGSVDLDMNDGEVRYKTTAEFGEAKNIKPILATFLDYHFSCGLRYLKAFIAIRDENVSAERAM 154
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BLAST of mRNA_S-dermatodea_contig10430.314.1 vs. uniprot
Match: D7FJD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJD8_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 3.030e-20
Identity = 44/84 (52.38%), Postives = 59/84 (70.24%), Query Frame = 1 
Query:   34 MRSMKIHQWRNRITHFCLKLAIGSVDIDMDDGEVRFKTTATFGTASNIKPILTNFMNFHVDFGKRYLQGFAAIKNHNASAETAM 285
            M S K+ Q    +T    ++A+GSVD+DM+DGEVR+KTTA FG A +IKPIL  F+++H   G RYL+ F AI++ N SAE AM
Sbjct:   69 MPSSKLAQTLLFVTLLNWEVAVGSVDLDMNDGEVRYKTTAEFGEAKDIKPILATFLDYHFSCGLRYLKAFIAIRDENVSAERAM 152
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BLAST of mRNA_S-dermatodea_contig10430.314.1 vs. uniprot
Match: UPI001A8EE66F (YbjN domain-containing protein n=1 Tax=Paradesulfitobacterium ferrireducens TaxID=2816476 RepID=UPI001A8EE66F)

HSP 1 Score: 50.1 bits (118), Expect = 2.040e-5
Identity = 28/95 (29.47%), Postives = 50/95 (52.63%), Query Frame = 1 
Query:    1 CLTHPPLPYPPMRSMKIHQWRNRITHFCLKLAIGSVDIDMDDGEVRFKTTATFGTASNIKPILTNFMNFHVDFGKRYLQGFAAIKNHNASAETAM 285
            C TH  L  PP++ +++ ++ NR+ +   +LA G+ ++DM+DGE+RF+T      A   K  + N +   V     Y  G   I  H+ + E ++
Sbjct:   53 CNTHIKLRVPPLKHLEVCEFMNRVNY---ELANGNFEMDMEDGEIRFRTYLDLSGADPSKEQIQNLIWNAVQSFDNYYPGLIEIIYHDLTPEESI 144
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10430.314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L4J9_9PHAE5.640e-2153.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJD8_ECTSI3.030e-2052.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI001A8EE66F2.040e-529.47YbjN domain-containing protein n=1 Tax=Paradesulfi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10430contigS-dermatodea_contig10430:7810..8094 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size285
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924157.6328278-CDS-S-dermatodea_contig10430:7809..80941622924157.6328278-CDS-S-dermatodea_contig10430:7809..8094Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10430 7810..8094 +
1694079057.11062-CDS-S-dermatodea_contig10430:7809..80941694079057.11062-CDS-S-dermatodea_contig10430:7809..8094Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10430 7810..8094 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10430.314.1prot_S-dermatodea_contig10430.314.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10430 7810..8094 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10430.314.1

>prot_S-dermatodea_contig10430.314.1 ID=prot_S-dermatodea_contig10430.314.1|Name=mRNA_S-dermatodea_contig10430.314.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=95bp
CLTHPPLPYPPMRSMKIHQWRNRITHFCLKLAIGSVDIDMDDGEVRFKTT
ATFGTASNIKPILTNFMNFHVDFGKRYLQGFAAIKNHNASAETAM
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mRNA from alignment at S-dermatodea_contig10430:7810..8094+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10430.314.1 ID=mRNA_S-dermatodea_contig10430.314.1|Name=mRNA_S-dermatodea_contig10430.314.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=285bp|location=Sequence derived from alignment at S-dermatodea_contig10430:7810..8094+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGCTTGACGCACCCTCCCCTTCCGTACCCCCCGATGCGCTCGATGAAAAT
TCATCAATGGCGCAACCGAATCACTCATTTTTGTCTTAAGCTGGCAATCG
GAAGTGTAGACATAGACATGGACGACGGAGAGGTGCGATTCAAGACAACG
GCAACGTTCGGCACCGCCAGCAACATCAAGCCCATCCTGACTAATTTCAT
GAACTTTCATGTCGACTTCGGGAAGCGGTACCTCCAAGGGTTCGCGGCCA
TAAAGAACCACAACGCCAGCGCGGAAACTGCAATG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10430:7810..8094+

>mRNA_S-dermatodea_contig10430.314.1 ID=mRNA_S-dermatodea_contig10430.314.1|Name=mRNA_S-dermatodea_contig10430.314.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at S-dermatodea_contig10430:7810..8094+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGCTTGACGCACCCTCCCCTTCCGTACCCCCCGATGCGCTCGATGAAAAT
TCATCAATGGCGCAACCGAATCACTCATTTTTGTCTTAAGCTGGCAATCG
GAAGTGTAGACATAGACATGGACGACGGAGAGGTGCGATTCAAGACAACG
GCAACGTTCGGCACCGCCAGCAACATCAAGCCCATCCTGACTAATTTCAT
GAACTTTCATGTCGACTTCGGGAAGCGGTACCTCCAAGGGTTCGCGGCCA
TAAAGAACCACAACGCCAGCGCGGAAACTGCAATGTGCTTGACGCACCCT
CCCCTTCCGTACCCCCCGATGCGCTCGATGAAAATTCATCAATGGCGCAA
CCGAATCACTCATTTTTGTCTTAAGCTGGCAATCGGAAGTGTAGACATAG
ACATGGACGACGGAGAGGTGCGATTCAAGACAACGGCAACGTTCGGCACC
GCCAGCAACATCAAGCCCATCCTGACTAATTTCATGAACTTTCATGTCGA
CTTCGGGAAGCGGTACCTCCAAGGGTTCGCGGCCATAAAGAACCACAACG
CCAGCGCGGAAACTGCAATG
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