mRNA_S-dermatodea_contig10421.307.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10421.307.1
Unique NamemRNA_S-dermatodea_contig10421.307.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10421.307.1 vs. uniprot
Match: A0A6H5JG41_9PHAE (PI3K/PI4K catalytic domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JG41_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 7.650e-41
Identity = 76/83 (91.57%), Postives = 81/83 (97.59%), Query Frame = 3 
Query:  600 RFRELFLSGFKAVQRHMRDIEALIWPMFPSSDHRMATQQILFRKRFMDFQTDDEILRLIDDAVRSWTTGQYDDFQQKTNGYLK 848
            RFRELFL+GFKAVQRHMR+IE LIWPMFPSSDHRM TQQILFRKRFMDFQTDDEI+RL+DD+VRSWTTGQYDDFQQKTNGYLK
Sbjct:  592 RFRELFLTGFKAVQRHMREIETLIWPMFPSSDHRMTTQQILFRKRFMDFQTDDEIMRLVDDSVRSWTTGQYDDFQQKTNGYLK 674
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BLAST of mRNA_S-dermatodea_contig10421.307.1 vs. uniprot
Match: A0A835ZKD2_9STRA (Pi 4-kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKD2_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.060e-10
Identity = 37/80 (46.25%), Postives = 52/80 (65.00%), Query Frame = 3 
Query:  600 RFRELFLSGFKAVQRHMRDIEALIWPMFPSSDHRMATQQILFRKRFMDFQTDDEILRLIDDAVRSWTTGQYDDFQQKTNG 839
            +F+ELFL+GF+AVQ+++ DI AL+  M P++D R   +    +KRF D +TD+EIL LI  +  S  T QYD  Q   NG
Sbjct:  210 KFQELFLAGFRAVQKNINDIAALVQVMMPANDRRTLIEISKLKKRFSDLKTDEEILGLIKSSANSVKTWQYDYIQSLQNG 289
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10421.307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JG41_9PHAE7.650e-4191.57PI3K/PI4K catalytic domain-containing protein n=2 ... [more]
A0A835ZKD2_9STRA1.060e-1046.25Pi 4-kinase n=1 Tax=Tribonema minus TaxID=303371 R... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10421contigS-dermatodea_contig10421:2836..4656 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.8
Seed ortholog evalue5.7e-39
Seed eggNOG ortholog2880.D7FJ66
Preferred namePI4KB
KEGG rclassRC00002,RC00078
KEGG koko:K00888,ko:K19801
KEGG ReactionR03361
KEGG Pathwayko00562,ko01100,ko04011,ko04070,map00562,map01100,map04011,map04070
KEGG ModuleM00130
GOsGO:0000003,GO:0000139,GO:0000212,GO:0000226,GO:0000280,GO:0000910,GO:0000916,GO:0003674,GO:0003824,GO:0004430,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005829,GO:0005886,GO:0006629,GO:0006644,GO:0006650,GO:0006661,GO:0006793,GO:0006796,GO:0006810,GO:0006897,GO:0006898,GO:0006935,GO:0006950,GO:0006996,GO:0007010,GO:0007017,GO:0007030,GO:0007049,GO:0007051,GO:0007110,GO:0007111,GO:0007112,GO:0007140,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007283,GO:0007423,GO:0007568,GO:0008150,GO:0008152,GO:0008340,GO:0008610,GO:0008654,GO:0009058,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0010256,GO:0010259,GO:0012505,GO:0016020,GO:0016043,GO:0016192,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019637,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0023052,GO:0030029,GO:0030036,GO:0030258,GO:0030587,GO:0030725,GO:0030726,GO:0030865,GO:0030866,GO:0031032,GO:0031090,GO:0031152,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032506,GO:0033206,GO:0033554,GO:0035295,GO:0035556,GO:0036213,GO:0040011,GO:0042221,GO:0042330,GO:0042594,GO:0042710,GO:0043062,GO:0043063,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043327,GO:0043583,GO:0044010,GO:0044011,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044764,GO:0044837,GO:0045017,GO:0046474,GO:0046486,GO:0046488,GO:0046834,GO:0046854,GO:0048015,GO:0048017,GO:0048137,GO:0048232,GO:0048285,GO:0048471,GO:0048513,GO:0048609,GO:0048731,GO:0048839,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051239,GO:0051301,GO:0051321,GO:0051703,GO:0051704,GO:0051716,GO:0052742,GO:0060872,GO:0061640,GO:0061982,GO:0061983,GO:0065007,GO:0071496,GO:0071704,GO:0071840,GO:0071889,GO:0071944,GO:0090175,GO:0090407,GO:0090605,GO:0090609,GO:0090702,GO:0097708,GO:0098588,GO:0098630,GO:0098657,GO:0098743,GO:0098791,GO:0099120,GO:0140013,GO:1901576,GO:1903046,GO:1905330,GO:2000026,GO:2000027
EggNOG free text desc.phosphatidylinositol kinase activity
EggNOG OGsCOG5032@1,KOG0903@2759
EC2.7.1.67
COG Functional cat.BDLTU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size1410
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10421.307.1prot_S-dermatodea_contig10421.307.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10421 3395..4129 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924157.0029082-UTR-S-dermatodea_contig10421:2835..33941622924157.0029082-UTR-S-dermatodea_contig10421:2835..3394Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10421 2836..3394 -
1694079056.600043-UTR-S-dermatodea_contig10421:2835..33941694079056.600043-UTR-S-dermatodea_contig10421:2835..3394Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10421 2836..3394 -
1622924157.0341656-UTR-S-dermatodea_contig10421:4129..46561622924157.0341656-UTR-S-dermatodea_contig10421:4129..4656Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10421 4130..4656 -
1694079056.6277318-UTR-S-dermatodea_contig10421:4129..46561694079056.6277318-UTR-S-dermatodea_contig10421:4129..4656Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10421 4130..4656 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924157.0140405-CDS-S-dermatodea_contig10421:3394..35321622924157.0140405-CDS-S-dermatodea_contig10421:3394..3532Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10421 3395..3532 -
1694079056.6121006-CDS-S-dermatodea_contig10421:3394..35321694079056.6121006-CDS-S-dermatodea_contig10421:3394..3532Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10421 3395..3532 -
1622924157.0244474-CDS-S-dermatodea_contig10421:3943..41291622924157.0244474-CDS-S-dermatodea_contig10421:3943..4129Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10421 3944..4129 -
1694079056.6206167-CDS-S-dermatodea_contig10421:3943..41291694079056.6206167-CDS-S-dermatodea_contig10421:3943..4129Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10421 3944..4129 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10421.307.1

>prot_S-dermatodea_contig10421.307.1 ID=prot_S-dermatodea_contig10421.307.1|Name=mRNA_S-dermatodea_contig10421.307.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=108bp
MISRRCCTPPFLAPFLAPFLPPRRRFRELFLSGFKAVQRHMRDIEALIWP
MFPSSDHRMATQQILFRKRFMDFQTDDEILRLIDDAVRSWTTGQYDDFQQ
KTNGYLK*
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mRNA from alignment at S-dermatodea_contig10421:2836..4656-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10421.307.1 ID=mRNA_S-dermatodea_contig10421.307.1|Name=mRNA_S-dermatodea_contig10421.307.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1821bp|location=Sequence derived from alignment at S-dermatodea_contig10421:2836..4656- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGGCCGGGAAGCGACAAGTGGGAAAGGCGAGCCGACTTTCGAACGACAA
AACAGTTGGTTTCGCTGAACGGCTCGTTTGTTGAGTGCGTTGGGCTCTGA
GGCCTGCCGTATGCGCAGAGTCTCCTCGACGGGGATATCGACTAACGCCG
GCCTGTAAACGCAAATACGTTTCTTTGTAAGACCACAAGGTTACTTTGGC
AGTCAGGTTGTGGCATCGATAGCTTCTGGCGCGGTACAAGCGAAGGAAAA
TCGTGACATCTTGACGCGCGGCAGGTGGGTTCCAGAGAAAAACTGTTTGC
GCAGCGGATGGCATCTCAGTCCTTCCCCAGAATACACCAACATCACCAAC
CTTCATTACTGGTGTAGCACGAGCAATGCGCAATGCAGCGAATCAGACAC
CCAACAAGTCGAAAATGCGTGCAGCCGCTCCGCTACGACGTCTTATTAAT
AGTACAGGCGAGCTCAAGGAAGAGTCGATACATGTTTGTTGGCGCGTCCT
GTTTGTGAACCCCTGTTCGACACCACAATGATCTCGCGTCGTTGCTGTAC
CCCTCCGTTCCTGGCTCCGTTCCTGGCACCATTCCTACCTCCGCGCCGAA
GGTTTCGGGAGCTGTTCCTGTCCGGCTTCAAGGCGGTGCAGAGGCACATG
CGAGATATCGAAGCGCTGATCTGGCCTATGTTTCCTTCTTCGGACCACAG
GATGGCTACTCAGGTTGACCACATGGAATTTTGTATAGCTATATCGCAGC
CATGGTTGCTCGAACTACGATGTAGATCAAAAATGCTTTTGCTGCGGTGG
TTCTGTCCGTTTCATGGAAAGGTGCTTCAACCCGCCCGTTCTTGTTGCCT
GATTCACGGACGGCCCGTACTCTGTGCTATATACACCGAGGCACGGTAGG
CCTCCTTCCTCCGGTTGCTGAGGGCAGGCATACGATGCCTTGGCTGTAGA
CATGCGCTGACGAAGGAACGGTATCTTCCGCCGTGTGAGCAATACGTGCC
GAGGGAAGCGGCAGGTCGCAGGCCTTTTTGTCAAGAAAACGGCAGTGGTA
GAAAACGTATGTTGCTACGGCCCTCACCCCCCCCGCCCGACATCGATTGC
GCACCCTTGTCCCATTTCTTGCAGCAAATTCTTTTCCGGAAGCGCTTCAT
GGACTTCCAGACTGACGACGAAATCCTGCGGCTTATCGACGACGCTGTAA
GGTCGTGGACGACCGGGCAGTACGACGACTTCCAGCAGAAAACAAACGGG
TACCTGAAGTGACGACAGTGGCAAATGCCTCGCGCGCTTGCGAGGGCTAA
CGGGGCGGTTTGTCGTACGTTCAAGCACGGGGAGGGGCACTCATCGTGGA
GGGAATGCAGGGCGACGTTTGTTCTGTTTTGCGGGTTTGCCTAATGGCTA
AGTCGATAACCGGCCTGATTTCGAGCGCCGGTGGAATGTCGTAAACTAAA
TCGACAAATCGTCGAGGCTGTTGAATCAGATGCTCCCAGCTTCGCAGGCG
TACGGTACACATTCTAGTGTACAATGGACCCTTATCGTTAGCATTTAGGG
GCTGAAGGCCATGGCGGATCACGTAATTAGTAATTACAGAGATGTGCATT
CTACGAAAACGATTCTACCTGCCTCGTTGTACAGTACCTGTATGGAGTTT
TTCTTTCTGGGCCTCTCGGGCTCATGTGGGTTCAGTAATAGGCGATACCT
TGCGGCAAGTTGCTTGGCCAACCACACTCTCTGGCAGATACATATAATAT
AATTGCTTCTTGCGTTGTGCGTTCCTCACGCCTCTGAAACCTCACCAGCT
CTCCACCTTCGCACCGTGTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10421:2836..4656-

>mRNA_S-dermatodea_contig10421.307.1 ID=mRNA_S-dermatodea_contig10421.307.1|Name=mRNA_S-dermatodea_contig10421.307.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at S-dermatodea_contig10421:2836..4656- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATCTCGCGTCGTTGCTGTACCCCTCCGTTCCTGGCTCCGTTCCTGGC
ACCATTCCTACCTCCGCGCCGAAGGTTTCGGGAGCTGTTCCTGTCCGGCT
TCAAGGCGGTGCAGAGGCACATGCGAGATATCGAAGCGCTGATCTGGCCT
ATGTTTCCTTCTTCGGACCACAGGATGGCTACTCAGATGATCTCGCGTCG
TTGCTGTACCCCTCCGTTCCTGGCTCCGTTCCTGGCACCATTCCTACCTC
CGCGCCGAAGGTTTCGGGAGCTGTTCCTGTCCGGCTTCAAGGCGGTGCAG
AGGCACATGCGAGATATCGAAGCGCTGATCTGGCCTATGTTTCCTTCTTC
GGACCACAGGATGGCTACTCAGCAAATTCTTTTCCGGAAGCGCTTCATGG
ACTTCCAGACTGACGACGAAATCCTGCGGCTTATCGACGACGCTGTAAGG
TCGTGGACGACCGGGCAGTACGACGACTTCCAGCAGAAAACAAACGGGTA
CCTGAAGTGACAAATTCTTTTCCGGAAGCGCTTCATGGACTTCCAGACTG
ACGACGAAATCCTGCGGCTTATCGACGACGCTGTAAGGTCGTGGACGACC
GGGCAGTACGACGACTTCCAGCAGAAAACAAACGGGTACCTGAAGTGA
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