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Homology
BLAST of mRNA_S-dermatodea_contig10409.298.1 vs. uniprot
Match: A0A6H5KCE8_9PHAE (EngB-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KCE8_9PHAE) HSP 1 Score: 65.1 bits (157), Expect = 2.780e-10 Identity = 34/63 (53.97%), Postives = 46/63 (73.02%), Query Frame = 1
Query: 1 ITKAALEMDVIEQEEALEGAGTRRTGRKNRRKE----QHPDVADLDSFFDKETDWRNGASAGA 177
I + AL DV+EQEE +E AG+RRTGRKNR K Q D++DLD +FDK++DWR+ +S+ A
Sbjct: 142 IARNALSQDVMEQEEEIEAAGSRRTGRKNRNKAEPAAQSDDLSDLDMYFDKQSDWRDSSSSAA 204
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 62.0 |
| Seed ortholog evalue | 1.5e-07 |
| Seed eggNOG ortholog | 2880.D8LT72 |
| EggNOG free text desc. | GTP binding |
| EggNOG OGs | COG0218@1,KOG2486@2759 |
| COG Functional cat. | V |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | YihA5, YihA/EngB-like GTPase |
| Ec32 ortholog | Ec-12_005510.1 |
| Exons | 2 |
| Model size | 273 |
| Cds size | 252 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622924156.2240627-UTR-S-dermatodea_contig10409:7704..7725 | 1622924156.2240627-UTR-S-dermatodea_contig10409:7704..7725 | Saccorhiza dermatodea SderLu1190fm monoicous | UTR | S-dermatodea_contig10409 7705..7725 - |
| 1694079056.0802774-UTR-S-dermatodea_contig10409:7704..7725 | 1694079056.0802774-UTR-S-dermatodea_contig10409:7704..7725 | Saccorhiza dermatodea SderLu1190fm monoicous | UTR | S-dermatodea_contig10409 7705..7725 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig10409.298.1 >prot_S-dermatodea_contig10409.298.1 ID=prot_S-dermatodea_contig10409.298.1|Name=mRNA_S-dermatodea_contig10409.298.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=84bp
MDVIEQEEALEGAGTRRTGRKNRRKEQHPDVADLDSFFDKETDWRNGASA
GAADGYDGQPAPSPRKRRSAAAAASLEDAEVDVG back to topmRNA from alignment at S-dermatodea_contig10409:4485..7725- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig10409.298.1 ID=mRNA_S-dermatodea_contig10409.298.1|Name=mRNA_S-dermatodea_contig10409.298.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3241bp|location=Sequence derived from alignment at S-dermatodea_contig10409:4485..7725- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATAACGAAGGCAGCTCTGGAGATGGACGTCATCGAGCAGGAGGAGGCGTT
GGAGGGCGCGGGAACCCGGAGAACCGGGCGCAAGAATAGGAGAAAGGCAA
ATCCCCCCTGACAAAGTACATGCCACACGTCTTTATTAATTAACAGCGCT
TTGCACGTTTGTTTGTTTTGTTTGTTTGTTTGTTTTACTATAATTTAGAG
TGGAGCCTTGATGCAATTTGCTGATGCCAATATACGGACACCAGTATAGT
CTCTAATGCCTATACACTTTTGTAGCCGCCCCCGCACGCTCGGCTTCCTC
CCACGTGGGTGAACGCCTGCCGTGGCTACTACCGCCACCGTGCGCGCCCA
ACACACACCGTCCTGCCACCGCACACCTCACGGGTGTAGCCGGGGCTACC
CACTATTACGGAGGTACACTATAATCAAGTAATCAAGTAATCAAGTAATC
AAGTAATCAAGTAATCAGGACCAAATATCATGGCCATGAATACAATACGC
AACTACTCCTATTAATATTAATATTGATACCATGATTACCCAAACAACAA
AAATCTCGCGAAGAAATAAAAAAGACGCGAGATATGACCATCTACAAGAA
CAGCGATCAATGAAATCTCGATGGATAATTCCAGCCTATTCTTGTTTTTT
CTGGGTTGAGACCTGTGGCAAATTTGGACCTGTTAACTATGGTCCTCCGT
GATATCATAGTATTGTATTGTATAGTATATAGCTATTACGTTATTACTAG
TAATACTTCGAAGTAGTACGGTAGGGCATACTGTAGTGTTTTAACAGACC
CAACCGTTGAGTAGTGAACAAGTCACCAGTGGCCACGAACAGCATGTTTT
TCGGGTTTTATTCAATGGGTACCTACTGTAGCTACCGCGTGCCCCGTGGT
TGAACTGGTTGACCAACAGCCTATTAATAGTAGGCGGAGGACCCGGGTTC
GAATCCCGGCAGAGTCAGTCGATATTTATTTGTTCTCTCTACCTCCGCCG
CGGAAAGCGCGAGAGCGTGAGTAAGCAAAAATCCGAGAGATCGGCGAGCT
GCGGGAGTGCCGAAACCAATGCATTCGCGATAAAACTCAAAGGTGAGAGC
CGGGGACAAGAGAGATGGGATGATCCCTTGTGACCACAGACAGACCTCGG
AAAAGCGAGTCTATCATATGTGTGCCAAAAAACGAAACTGTAGCTACGGG
CTAGCCGTGAGGTGTTGCAAAAGGGCGAACCGGCAACCAAGATCCGAAAA
AATCTTCAAAATACCACTCTGTAAGCCTTACCGATTTGGCATCAAGAGCT
CCACTCTAAAGCCCTATCGATTTTGGCATAGAGGGCCAACTCTAAATCGC
TACTCTATTAAAAGACGTTCAAAAGCTATGCTATCAATTTTATGTACATA
TTTTCTACATCTCATAGTGTACTTGTATGAGATAGGAAAGATAGGAATCT
TGGCCAGAAGATGAAGATGAAGATGAAGATTTGCACTATACTATTCCTAT
GATATGTAATATGTAGGTGTTGTATTACAGTAGCTCTAAGGCCAGCTTTC
ACGTGGTCTGTATTATTGAGGGAAGTTTGTTCGTAGACTTCGTTTTAGCC
CTGTTCCTTCGTAGCAAGAGCTTTGTGCCAATACTTATTCTTACACTCCC
ACTGTATGCGTGTAATATGATACGGGCCGGTACCAACAATTCCGGGCGGC
ACGGCTCTTGGGGTGACGCCATTCATCACCACCACGTCACCCGGTATATG
TACAGATTATTATATTAATAGTATAATATACAGTATAGTATACACGATAT
ATTGGCTCTGCGAAGAGTGACCCTTGCCATCGAGGTGGAGGAGCAGTGAA
AGACGACGCAAGGATTCCAACTATTCTTCTTCCTGTACAGCAGTTTAGTA
TAAACGTGGTAGATCGTGTGACGTTTAGGTGACTGCGGGTGGTGCGTGTT
GAGATGGCCGTTAACATGATGAAGAGCGTGGACGCTTGCGTTTTGCCACT
GGTGCAGCGCCCTCTTCAGGTACTTCATACTTTTTTATCTACTGTATATA
CATAGCTACCAATCTGGTGGTGGTTGGATGCGAAACGAGGCTAAGGAGAA
GGGTGTGCCATGACATGCGTAGACGGCAGCAGACAGAGGCCCTCGACCTT
TTGGCGCACCGCCAATGTAGCACTACCTCGAAAGCTGGCGGGCGCTTTGA
TAGGATGGATGTTTGCTCTTTTTTTTTTCCACTGCGGCGCGATTATGAAA
ATACACGCTACTGTACGTTATCGTACCGCAGACAGCGCCGTGTGCTATGC
TCCAAGGTTTCCGGATGGACCTTGTGTTTTCGTATGTGTCTGTACCGGGG
AGCGCAACAGGCTTGCGCCCCCGCGTTCGGGGGGGGGGGGGGGGAATTCT
CGCCCATGTTAGTGAGGCGCCGCGGGGTGGGGTGGCCGCCCGGCCCACCG
CCGCCCNNNNNNNNNNGGCGGCGGGGTCGGGCGCGGCGCCGGGGGCGGGG
GGGTGCGGTGGTGTTTATTCTCGCCCTTGTTAGTGTAGCGCCGCGCGGTA
CGGTGACCGCCCGACCGACCGACTCCCGAGCTGCGAGAAGAACGATGGGC
GGAGAAGGATGCGGCGGGCGCGTGAGCCCTGCGTGTCGTAGTTTTTCACC
ACATTTCGCGGGAAGAAAACAAAAAACAAAACACACACACACACACATAC
ACACACACACACATACGCACACACCGACAGAGTGAAAAGGTGCACGCACC
CAGAGACTTGTAGTCGTCGTTCGCGGCGGGTGCGCGGCGTGCAACCATGC
CGGCAGGTAACTGCTTCATCGGCGGCAGCGGCAGCAGCAGCAACAGCAGC
GGCGGCACGGGAAGGTTGATTTAAGGTTTTGAGGGTTTTCGGTGTTTCTT
TCGAGATACACGCCGGAATCGTCCAGACCTTAATGTTTGTGCAACCTCAA
ACCAGCCGTATTTTATCCCCCCCCCCCCCTCCCCCACCGCCCCCACCCAC
CCACCGCCCCACCTCCACCCCGGCCCCCACCCACCCCGACCCCCACCCCC
ACCCCCATCCACAGGAGCAGCATCCTGACGTGGCCGACTTAGACTCGTTT
TTCGACAAAGAAACAGACTGGAGAAATGGTGCCTCAGCCGGCGCCGCCGA
CGGGTACGATGGACAGCCTGCCCCCTCGCCCCGAAAACGACGATCGGCGG
CGGCGGCGGCCTCCTTGGAGGACGCGGAGGTGGACGTCGGG back to topCoding sequence (CDS) from alignment at S-dermatodea_contig10409:4485..7725- >mRNA_S-dermatodea_contig10409.298.1 ID=mRNA_S-dermatodea_contig10409.298.1|Name=mRNA_S-dermatodea_contig10409.298.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at S-dermatodea_contig10409:4485..7725- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGACGTCATCGAGCAGGAGGAGGCGTTGGAGGGCGCGGGAACCCGGAG
AACCGGGCGCAAGAATAGGAGAAAGATGGACGTCATCGAGCAGGAGGAGG
CGTTGGAGGGCGCGGGAACCCGGAGAACCGGGCGCAAGAATAGGAGAAAG
GAGCAGCATCCTGACGTGGCCGACTTAGACTCGTTTTTCGACAAAGAAAC
AGACTGGAGAAATGGTGCCTCAGCCGGCGCCGCCGACGGGTACGATGGAC
AGCCTGCCCCCTCGCCCCGAAAACGACGATCGGCGGCGGCGGCGGCCTCC
TTGGAGGACGCGGAGGTGGACGTCGGGGAGCAGCATCCTGACGTGGCCGA
CTTAGACTCGTTTTTCGACAAAGAAACAGACTGGAGAAATGGTGCCTCAG
CCGGCGCCGCCGACGGGTACGATGGACAGCCTGCCCCCTCGCCCCGAAAA
CGACGATCGGCGGCGGCGGCGGCCTCCTTGGAGGACGCGGAGGTGGACGT
CGGG back to top
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