mRNA_S-dermatodea_contig10404.296.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10404.296.1
Unique NamemRNA_S-dermatodea_contig10404.296.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig10404.296.1 vs. uniprot
Match: D7FPP9_ECTSI (Alanine--tRNA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPP9_ECTSI)

HSP 1 Score: 323 bits (827), Expect = 5.640e-101
Identity = 176/215 (81.86%), Postives = 188/215 (87.44%), Query Frame = 1
Query:    1 QVGIAKGVRRIVAVTRGLAQGARERAAAFEQQLEAADAINDLALDITVRRLGAELDTSVFSLKAKNKFRARLAKLVQKAKTIKKKVMEERVGQAVNSGKAEAEKMKEAGENKLVFRADFGCDAKSAAKILAEVSKACPHLASLMLFTADEEADRWLCCGLIPNSKAAKKDANKWVQAALDASGKGGKGGGKGDRAQGISQGVDTLDKAMEAARDP 645
            + GIAKGVRRIVAVTRGLA  A ERA AFEQQL+ AD I D++LD TVRRLGAELD +V S+K KNK RARLA LVQKAK +KKKVMEERVGQAV  GKAEAEK KEAG  +LVFRADFGCDAKSA KILAEVSKACP L S+MLFTADEEADR+LCCGLIPNSKAAKKD NKWVQ ALDASG+GGKGGGKGDRAQGISQGVDT+DKAME AR P
Sbjct:  777 EAGIAKGVRRIVAVTRGLALAAVERAKAFEQQLDVADGIEDISLDTTVRRLGAELDGAVISVKTKNKLRARLATLVQKAKALKKKVMEERVGQAVTVGKAEAEKTKEAGGTQLVFRADFGCDAKSAVKILAEVSKACPELTSMMLFTADEEADRYLCCGLIPNSKAAKKDTNKWVQCALDASGRGGKGGGKGDRAQGISQGVDTIDKAMEVARGP 991          
BLAST of mRNA_S-dermatodea_contig10404.296.1 vs. uniprot
Match: A0A6H5L0C8_9PHAE (Alanine--tRNA ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0C8_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 5.860e-54
Identity = 111/142 (78.17%), Postives = 120/142 (84.51%), Query Frame = 1
Query:    1 QVGIAKGVRRIVAVTRGLAQGARERAAAFEQQLEAADAINDLALDITVRRLGAELDTSVFSLKAKNKFRARLAKLVQKAKTIKKKVMEERVGQAVNSGKAEAEKMKEAGENKLVFRADFGCDAKSAAKILAEVSKACPHLAS 426
            + GIAKGVRRIVAVTRGLA  A ERA AFEQQL+ AD I D++LD  VRRLGAELD +V S+KAKNK RARLA LVQKAK +KKKVMEERVGQAV +GKAEAEK KEAG  +LVFRADFGCDAKSA KILAEVSKACP L S
Sbjct:  610 EAGIAKGVRRIVAVTRGLALAAVERAKAFEQQLDVADGIEDISLDTKVRRLGAELDGAVISVKAKNKLRARLATLVQKAKALKKKVMEERVGQAVTAGKAEAEKTKEAGGTQLVFRADFGCDAKSAVKILAEVSKACPELVS 751          
BLAST of mRNA_S-dermatodea_contig10404.296.1 vs. uniprot
Match: A0A6V2XN65_HETAK (Alanine--tRNA ligase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2XN65_HETAK)

HSP 1 Score: 138 bits (347), Expect = 6.560e-34
Identity = 90/210 (42.86%), Postives = 124/210 (59.05%), Query Frame = 1
Query:    7 GIAKGVRRIVAVTRGLAQGARERAAAFEQQLEAADAINDLALDITVRRLGAELDTSVFSLKAKNKFRARLAKLVQKAKTIKKKVMEERVGQAVNSGKAEAEKMKEAGENKLVFRADFGCDAKSAAKILAEVSKACPHLASLMLFTADEEADRWLCCGLIPNSKAAKKDANKWVQAALDASGKGGKGGGKGDRAQGISQGVDTLDKAMEAA 636
            GIAKG+RR++AVTRG A+ AR+R+ AFE +L+AA  +   AL    + L   L+    S+  KN+ R  L  L  K K  KKK ++   G A+   + +A++ +EAG  K+V R DFGCD K   K + E+ K  P     M+ +ADE+ADR+ C  +IP +K    DAN W+ AA+DA+G GGK GGK D A G   G   +D A  AA
Sbjct:  772 GIAKGIRRVIAVTRGAAEEARDRSRAFEAELKAAAELEGEALLEACKGLTQALNPLAISVVDKNRLREELGALATKVKAWKKKQLKAMSGMALGLCEEKAKEAREAGARKVVLRVDFGCDGKVGKKCVQEMHKHHPE-GVFMVLSADEDADRFQCYAMIPGAKEKGLDANAWLAAAMDAAG-GGKSGGKPDNAMGTVNGCSGIDAAAAAA 979          
BLAST of mRNA_S-dermatodea_contig10404.296.1 vs. uniprot
Match: A0A7S2V5N9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5N9_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.020e-30
Identity = 89/211 (42.18%), Postives = 123/211 (58.29%), Query Frame = 1
Query:    7 GIAKGVRRIVAVTRGLAQGARERAAAFEQQLEAADAINDLALDITVRRLGAELDTSVFSLKAKNKFRARLAKLVQKAKTIKKKVMEERVGQAVNSGKAEAEKMKEAGENKLVFRADFGCDAKSAAKILAEVSKACPHLASLMLFTADEEADRWLCCGLIPNSKAAKKDANKWVQAALDASGKGGKGGGKGDRAQGISQGVDTLDKAMEAAR 639
            GIAKG+RR++ VTR  A  A+E + AF++++  AD +   ALD   R L  EL+    S+  K   RA+L   V++ K  KKK       QA+ +  A A + KE G+N +V R DFGC+ K   K L E  K  P  ASLML +AD E DR+    ++P +     DA +WV+AALDA+G GGKG  K D A G + GV  ++ A+EAA+
Sbjct:  291 GIAKGIRRVIGVTREAAVAAKEASEAFKKKITEADKLEGQALDEAWRALTQELNQLQISIVDKAGHRAQLDAQVERIKKWKKKAAAGSATQAIGAVNALASEAKEKGQNVVVARLDFGCNGKVGKKALGEFKKVHPG-ASLMLLSADTEKDRFQIFAMVPEAAKKGLDAREWVKAALDAAG-GGKGXXKPDDAMGNAAGVSGIESAIEAAK 499          
BLAST of mRNA_S-dermatodea_contig10404.296.1 vs. uniprot
Match: A0A7R9WUI9_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WUI9_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.030e-24
Identity = 86/211 (40.76%), Postives = 115/211 (54.50%), Query Frame = 1
Query:    7 GIAKGVRRIVAVTRGLAQGARERAAAFEQQLEAADAINDLALDITVRRLGAELDTSVFSLKAKNKFRARLAKLVQKAKTIKKKVMEERVGQAVNSGKAEAEKMKEAGENKLVFRADFGCDAKSAAKILAEVSKACPHLASLMLFTADEEADRWLCCGLIPNSKAAKKDANKWVQAALDASGKGGKGGGKGDRAQGISQGVDTLDKAMEAAR 639
            GIAKG+RR+V VTR  A+ A   A AFE +L AA+A+    L+  V+ L AELD  V S   KN FRA L K+ +KA   KK+ +    G+ +  G   A +  E   NK+V+R DFG D K A  +    +K     A LML +ADE ADR++   +   +K    D  +WV  + +  G GGKGGGK D  Q    GV  +D  ME A+
Sbjct:    5 GIAKGIRRMVFVTREKAKAAIAAAEAFEVKLTAAEAVEGANLEKEVKTLTAELDALVISAVRKNDFRATLQKMSKKAVAWKKERLAGMTGE-IKQGAIAAGEASEG--NKVVYRFDFGIDGKLAKSVTQAFTKKIKDKA-LMLVSADEAADRFMVMAVA--AKGLDIDCKQWVTTSCE--GTGGKGGGKKDSCQFTVPGVSHVDAVMEKAK 207          
BLAST of mRNA_S-dermatodea_contig10404.296.1 vs. uniprot
Match: A0A7S4ME88_9STRA (Alanine--tRNA ligase n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4ME88_9STRA)

HSP 1 Score: 103 bits (258), Expect = 5.130e-22
Identity = 81/211 (38.39%), Postives = 110/211 (52.13%), Query Frame = 1
Query:    7 GIAKGVRRIVAVTRGLAQGARERAAAFEQQLEAADAINDLALDITVRRLGAELDTSVFSLKAKNKFRARLAKLVQKAKTIKKKVMEERVGQAVNSGKAEAEKMKEAGENKLVFRADFGCDAKSAAKILAEVSKACPHLASLMLFTADEEADRWLCCGLIPNSKAAKKDANKWVQAALDASGKGGKGGGKGDRAQGISQGVDTLDKAMEAAR 639
            GIAKGVRRI AVT G A+ A ERA  FE +L+ A A+    L+  V++L  EL     S+  K+ F+  L KL +KA   KK+    R  + V    + A    EAG NK+  R DFG D K A  +    +K     A L++ TADE + R++     P       D   W QAA +  G G KGGGK D AQ  + G++ ++  +E AR
Sbjct:  761 GIAKGVRRITAVTGGDAKAAGERADEFEGRLKEAGALPGAELEAGVKKLSEELKDLSISVARKDGFKTELGKLTKKAMAWKKEQAAARTKEVVEQLVSAAN---EAGGNKIALRIDFGIDGKVAKSVAQSFAKKVKDKAFLLI-TADESSGRFMVVASAPKGMKDPVDCKAWCQAATE--GTGAKGGGKKDLAQFNATGIEKIEGVLEKAR 965          
BLAST of mRNA_S-dermatodea_contig10404.296.1 vs. uniprot
Match: A0A7S0FSX1_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FSX1_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 7.400e-21
Identity = 87/216 (40.28%), Postives = 112/216 (51.85%), Query Frame = 1
Query:    7 GIAKGVRRIVAVTRGLAQGARERAAAFEQQLEAADAINDLALDITVRRLGAELDTSVFSLKAKNKFRARLAKLVQKAKTIKKKVMEERVGQAV-NSGKAEAEKMKEAGE---NKLVFRADFGCDAKSAAKILAEVSKACPHLASLMLFTADEEADRWLCCGLIPNSKAAKK-DANKWVQAALDASGKGGKGGGKGDRAQGISQGVDTLDKAMEAAR 639
            GIAKGVRRIV VT+  A  A  +A  FE +L  A A+  L L+  +++LG EL     S   K  F   L KL +     KK       GQA   +GK   E +  A     NK+V R+DFG D K+A  I A VSK     A L++ +ADE+A R+L     P  K  K  D   WV AA +  G GGKGGGK D AQ    G++ +D  +E A+
Sbjct:   38 GIAKGVRRIVGVTKADAAAATAKADEFESRLTEASAVQGLELEGAIKKLGQELGELSISTVRKAGFNETLGKLGKAVVAWKK-------GQAAAKAGKVADELIAAASTTEGNKIVVRSDFGLDGKAAKSISAAVSKKVKDKAFLLV-SADEDAGRFLVFAFAP--KGLKDVDCKAWVAAATE--GTGGKGGGKKDAAQSNISGLEKIDGVLEKAK 241          
BLAST of mRNA_S-dermatodea_contig10404.296.1 vs. uniprot
Match: B7G5M3_PHATC (Alanine--tRNA ligase n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G5M3_PHATC)

HSP 1 Score: 94.4 bits (233), Expect = 1.090e-18
Identity = 79/213 (37.09%), Postives = 111/213 (52.11%), Query Frame = 1
Query:    7 GIAKGVRRIVAVTRGLAQGARERAAAFEQQLEAADAINDLALDITVRRLGAELDTSVFSLKAKNKFRARLAKLVQKAKTIKKKVMEERVGQAVNSGKAEAEKMKEAGENKLVFRADFGCDAKSAAKILAEVSKACPHLASLMLFTADEEADRWLCCGLIPNSKAAKKDAN--KWVQAALDASGKGGKGGGKGDRAQGISQGVDTLDKAMEAAR 639
            GIAKG+RRI A+T G A+ A   A  FE +L AA+ +    L+ TV++L AELD    +   K +FR +LA + ++    KK+ +                    AG +K+V R DFG + K A  ++    K     A L+L TAD EADR++   +I  +  A KD N   W++AA D  G   KGGGK D AQ    GV+ +D  +E AR
Sbjct:  767 GIAKGIRRITAITTGEAKKAIALANEFESKLTAAEVVQGDDLESTVKQLSAELDGLDIAAVKKMQFREQLATMTKQVLAYKKQKL--------------------AGGSKVVMRFDFGVEGKVAKSVMTAFGKQVKDKA-LLLVTADPEADRFM---VIAGAPKAMKDLNCKAWIEAATD--GLDAKGGGKPDSAQYQVSGVEAVDTVLEKAR 953          
BLAST of mRNA_S-dermatodea_contig10404.296.1 vs. uniprot
Match: A0A7S2GZW7_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GZW7_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 4.220e-18
Identity = 79/212 (37.26%), Postives = 106/212 (50.00%), Query Frame = 1
Query:    7 GIAKGVRRIVAVTRGLAQGARERAAAFEQQLEAADAINDLALDITVRRLGAELDTSVFSLKAKNKFRARLAKLVQKAKTIKKKVMEERVGQAVNSGKAEAEKMKEAGENKLVFRADFGCDAKSAAKILAEVSKACPHLASLMLFTADEEADRWLCCGLIPNSKAAKK-DANKWVQAALDASGKGGKGGGKGDRAQGISQGVDTLDKAMEAAR 639
            GIAKGVRRI AVT   A  + E     E ++  A+ +  LAL+  +++L  E++ +  S  AK K R  L    ++    KK+    R  + V    + A   KE   NK+V R DFG D K+A  I     K     A L+L +ADE +DR++     P  K  K  D   WV AA +  G GGKGGGK D AQ    G++ LD   E AR
Sbjct:   58 GIAKGVRRITAVTMEDAVASSELCKEIESRVMKAEKLEGLALEEEIKKLTPEVNEANISAAAKMKMRGVLGVYGKRVVAWKKERAAARTSEVVQDAISAA---KETEGNKVVLRFDFGVDGKAAKSITGAYGKKVKDKA-LLLVSADESSDRFMVVAFAP--KGMKDVDCKAWVMAATE--GTGGKGGGKKDSAQFTVPGLEKLDSVFEKAR 261          
BLAST of mRNA_S-dermatodea_contig10404.296.1 vs. uniprot
Match: A0A448YWB7_9STRA (Alanine--tRNA ligase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YWB7_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.080e-16
Identity = 78/216 (36.11%), Postives = 108/216 (50.00%), Query Frame = 1
Query:    7 GIAKGVRRIVAVTRGLAQGARERAAAFEQQLEAADAINDL-ALDITVRRLGAELDTSVFSLKAKNKFRARLAKLVQKAKTIKKKVM----EERVGQAVNSGKAEAEKMKEAGENKLVFRADFGCDAKSAAKILAEVSKACPHLASLMLFTADEEADRWLCCGLIPNSKAAKKDANKWVQAALDASGKGGKGGGKGDRAQGISQGVDTLDKAMEAAR 639
            GIAKG+RRI  VT   A+ A   A  FE++L+AA  +     L+  V+ L  E D+ V S   K  FR  +A  ++K  T KKK M    +E   +A+ +G+A          NK+VFR DFGCDAK    +    +K     A +M+ +AD +A+R+L   + P  K    D   W     +  G  GKGGGK D AQ     V  +D  ME A+
Sbjct:  769 GIAKGIRRITFVTCNDAKAAIAAADEFEKKLDAASKLEGGDELEALVKSLTLECDSLVISTVKKTAFRETIAGFLKKVMTWKKKRMAGMKDEIATKAIEAGEATE-------GNKVVFRFDFGCDAKLGKNVATAFTKKIKDKA-IMIISADSDANRFLVLAMAP--KGLDVDCKAWCMGVTE--GTNGKGGGKKDSAQFTVPDVSLVDSVMEKAK 972          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10404.296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPP9_ECTSI5.640e-10181.86Alanine--tRNA ligase n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5L0C8_9PHAE5.860e-5478.17Alanine--tRNA ligase n=1 Tax=Ectocarpus sp. CCAP 1... [more]
A0A6V2XN65_HETAK6.560e-3442.86Alanine--tRNA ligase n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2V5N9_9STRA1.020e-3042.18Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7R9WUI9_9STRA1.030e-2440.76Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S4ME88_9STRA5.130e-2238.39Alanine--tRNA ligase n=2 Tax=Odontella aurita TaxI... [more]
A0A7S0FSX1_9STRA7.400e-2140.28Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
B7G5M3_PHATC1.090e-1837.09Alanine--tRNA ligase n=1 Tax=Phaeodactylum tricorn... [more]
A0A7S2GZW7_9STRA4.220e-1837.26Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A448YWB7_9STRA1.080e-1636.11Alanine--tRNA ligase n=1 Tax=Pseudo-nitzschia mult... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10404contigS-dermatodea_contig10404:359..4393 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.1
Seed ortholog evalue1.3e-18
Seed eggNOG ortholog2850.Phatr47999
KEGG rclassRC00055,RC00523
KEGG koko:K01872
KEGG ReactionR03038
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
EggNOG free text desc.Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain
EggNOG OGs2XACW@2836,COG0013@1,KOG0188@2759
EC6.1.1.7
COG Functional cat.J
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionAlanyl-tRNA Synthetase
Ec32 orthologEc-20_000890.1
Exons6
Model size654
Cds size654
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10404.296.1prot_S-dermatodea_contig10404.296.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10404 359..4393 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924155.9565194-CDS-S-dermatodea_contig10404:358..4991622924155.9565194-CDS-S-dermatodea_contig10404:358..499Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10404 359..499 +
1694079055.9114509-CDS-S-dermatodea_contig10404:358..4991694079055.9114509-CDS-S-dermatodea_contig10404:358..499Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10404 359..499 +
1622924155.9656758-CDS-S-dermatodea_contig10404:1092..11851622924155.9656758-CDS-S-dermatodea_contig10404:1092..1185Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10404 1093..1185 +
1694079055.9283018-CDS-S-dermatodea_contig10404:1092..11851694079055.9283018-CDS-S-dermatodea_contig10404:1092..1185Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10404 1093..1185 +
1622924155.9747658-CDS-S-dermatodea_contig10404:1819..19211622924155.9747658-CDS-S-dermatodea_contig10404:1819..1921Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10404 1820..1921 +
1694079055.9372783-CDS-S-dermatodea_contig10404:1819..19211694079055.9372783-CDS-S-dermatodea_contig10404:1819..1921Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10404 1820..1921 +
1622924155.9832387-CDS-S-dermatodea_contig10404:2281..23651622924155.9832387-CDS-S-dermatodea_contig10404:2281..2365Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10404 2282..2365 +
1694079055.944309-CDS-S-dermatodea_contig10404:2281..23651694079055.944309-CDS-S-dermatodea_contig10404:2281..2365Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10404 2282..2365 +
1622924155.9971104-CDS-S-dermatodea_contig10404:3145..32531622924155.9971104-CDS-S-dermatodea_contig10404:3145..3253Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10404 3146..3253 +
1694079055.9542644-CDS-S-dermatodea_contig10404:3145..32531694079055.9542644-CDS-S-dermatodea_contig10404:3145..3253Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10404 3146..3253 +
1622924156.005699-CDS-S-dermatodea_contig10404:4267..43931622924156.005699-CDS-S-dermatodea_contig10404:4267..4393Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10404 4268..4393 +
1694079055.9752429-CDS-S-dermatodea_contig10404:4267..43931694079055.9752429-CDS-S-dermatodea_contig10404:4267..4393Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10404 4268..4393 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10404.296.1

>prot_S-dermatodea_contig10404.296.1 ID=prot_S-dermatodea_contig10404.296.1|Name=mRNA_S-dermatodea_contig10404.296.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=218bp
QVGIAKGVRRIVAVTRGLAQGARERAAAFEQQLEAADAINDLALDITVRR
LGAELDTSVFSLKAKNKFRARLAKLVQKAKTIKKKVMEERVGQAVNSGKA
EAEKMKEAGENKLVFRADFGCDAKSAAKILAEVSKACPHLASLMLFTADE
EADRWLCCGLIPNSKAAKKDANKWVQAALDASGKGGKGGGKGDRAQGISQ
GVDTLDKAMEAARDPAF*
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mRNA from alignment at S-dermatodea_contig10404:359..4393+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10404.296.1 ID=mRNA_S-dermatodea_contig10404.296.1|Name=mRNA_S-dermatodea_contig10404.296.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4035bp|location=Sequence derived from alignment at S-dermatodea_contig10404:359..4393+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTTGGAATCGCCAAGGGTGTACGGCGGATCGTCGCCGTAACTCGTGG GCTGGCTCAGGGCGCGCGAGAGAGGGCCGCGGCTTTCGAGCAGCAGCTGG AAGCGGCCGATGCGATCAACGACCTCGCCCTCGACATCACGGTAAGGCTC GTGGCAAGAGCCAAAGCGCGGAATGTCAGGATATATGGTCAAATATGTGG TCATTGTGTATCCACAGTTTGTCTCCCTTCAACTCGGCACAAGGCAGGTG GCCGAGACGGTACGCTGAGCAGCTTGAGGCCGAGACTATGCTCGCAGACA TGTGAATCGACGTTCTACTGTAAGCGAAACGTGTAACGCCCTTCCTCGGC GACTCCTTGTGTTCCGGTACGACGATAGCACTGGGCGAGCCGCAGACAGA ATTGTCTCGCGAGCTCCCCATCTCCGGCGAAAATGATATCTGGCTTTGGC TCCCTCGCCTTGGAGCTGCCGCCATAGGTTGGTGTGGTGCACAGTGAGGC GCAGGACCGAGGCCCGGCTGTGGATTTCAGTATGGAGCAGAGCATATTTT GCTGCCCCTTTGCACTCCGCGCGCTGCAAATGCTGAGCTCATTAGCAGAG ATCTAGAGCAGAGCTTTACAGCGGTAGCGTATCGGTAGCTTGCCCTCGCC GTGTCGTCCATTTCATCACGTCTGAACGGATTCGTGTTTCGTGTCACGGC TGAGCACACACTGCGATGTGGTTGTCATCGGCAGGTTCGACGTCTGGGCG CGGAGCTGGACACGTCCGTGTTTTCCCTGAAGGCGAAGAACAAGTTCCGT GCTCGTCTCGCGAAGCTCGTGCAAAAGGTAACGCCCTCTCTAGCATCACA CCGTGCCTGCTCTATCTGTTGGGGGTAGTATGCCTACGGGAAAAATCCCT ACGTACAGTATATGATCCAGACGGTATGCATAGCCAACGATAACGAAGCC GGGCTGCCGTACACGTTTGTCACGAGGGATTGGGAGTCGTTGACATAAAC CATCTAAACCTAATCTCTAGCTGGGCGCTTTGAATGTCCCTACTGTGGTG CTGTGAGGCAACGGCGACTTGTCGTCCAGCACAAAAAACGTGACACACAC AAGAATAATATCAAAGCGCACCACTCGCCCAGTGGTCCAGGTGGTGACAG CAACGTCCCAGTAATGTGGAGGTCGTGGGTTCAATTCCCCCCAGAGATAA ATAAACATATTAGCCTTTTCACTGCCTCGGCAAGCGCCAGAGCGCGAACA AGCAAAATCCTAGCAGGTAGCGAGAAAACCGCGGGGGTGCTGAAGCCGAG GCGCGATAAAAGTCTTCAAACATCTACCGGGGATATATGGGATTATCCCC CGGGATCACAGACGGGGTTCGGATATGGCCGGTCAGTCGTACACGAGCCG CACACTCACACACCCACACAAGCCAACAGTGACGCCGACTTCTGGCGCGG TTTGTGAACAGGCCAAGACCATCAAGAAGAAAGTGATGGAGGAGCGAGTG GGGCAGGCGGTGAACTCGGGCAAGGCCGAAGCGGAGAAAATGAAGGAGGC CGGCGAAAACAAGGTGTGATCCTACTGCTTCTCTACTCTTACGTCACCAC GACCATAGATTTTGCACGAACCAGTGAACCAATCACGCCAGTTGTGAGGC TTGCCTTCGGACGAAGAAGTCGATCCGACCCTGCTTTTCGGCCGCAACGC GACCATCGTATTGTACACAGTAGTTGCGACCTCCCACAATTTCTCTTGGA AGGCAGTTGTTTTTGACGCCGAAGGTATTGCTCTAGGGATACAATCAGAG ATGTCCGCACTTGCCGTTCGTTCCTGTCTGCCCGAGCCGAGCGTACACGT CGAGTGTGACGTCATCTGTTGTTGACGGATCCCAAATCACTGGTATCCAA AATTTTTCCTCTCGCCATCGCAGCTGGTTTTCCGCGCGGACTTCGGGTGC GACGCAAAGTCTGCCGCGAAGATCCTTGCGGAGGTGTCCAAGGCCTGCCC CCACCTGGTGAGAGTCCTCGCGATCCACGCTTGGAGCACTGTTCGTGCCG ATGTGTTGCGTCGTACTCTGCATCTGTTCTATTTGTTTGTTTTTTTTCCT GCCTGGGCTACCACTCTCTCTCGCGCTCGTGGTTCACGGTGCGTCTTGTT TTAATGCATTTGTGTCGGGGTTTTTATTAGTCACGGTTGCCAGACTCGAT AAGGACATCGCGGGTGCGCTTAGCCCTTCCTGTAGAAGAGGGGACCGTTT TATTTTATTTTACTTTTAATTTTTTTTAATAGCAGGCCCAAGTTCAGAGG TATGCCCCCTCTGCTTCCGAGAGTTTGTGTCAAATCCTTCTTTGTATATA CTATGTAGGTAATTGCGTAGTTTTTTTTTCGATATATCGATTTATCATGT GACCACAAGCGGGGTCGGCAACCTTTGGTGGGCCGGTCGGTTGTAAGTTT GATAATCAAACTAGTAGGTAGCCACGGTTACGCCTGTGAGGTGTGAGTGG TCGGTCGCTCAAGTCCAAAAGTTGTTTGGCGCTCAACACAAACATCATCT AGTTTTTTGGCATCACAATAGCCCTCTCTGAAATTCCCATAATTTTAGGC CTCAGCTTCGTATAGGAAATGGTGTGGGCATGGTCACTCTAAAATGAAAA AAAGGGACAAATATCTACTAATTAATGAGATAGAAAACAGTGCCTCCATT GCCATCGAAACTATCCTACTAATGGCCCTTTCGCTCTGACGACTTGCCAC TGCGTTTGTGTGTCTACGTTTGCGCCGGATCGTGCAGGCGTCGTTGATGC TCTTCACCGCCGACGAGGAGGCTGACCGGTGGTTGTGTTGCGGGCTCATC CCGAACTCTAAGGCTGCGAAGAAGGATGCCAACAAATGGGTGCAGGTGAT GTTTGTGATGTGACCAGAAAATTGACGAGTAGACCTCGCTCCATTGTAGT ATATATGTATGTAACGTTTGCTCGTGGACTGTCCAAATATCTGGCTTACT GCATCTGACTTACGGCATTTCCGAGCCCGAGCTGTAATGATAACTATTCT CCCAAGTGTTTTTGGAGCGTCCTAGTGCCAATGATCCTCGGCCGAGCCGG GGAAGAAGTCACCAGCACTACCGACGTGTACGTTCGTGTGACGCTGCTCG TGGATGCTTGACAAGCCAAGTTTTCGCTACAATTACCTTCGGAGATGCAT TTCGGACGATATTCCCTCCTGTGAAAAACAGCTTGATTTTAACTACGTAG AGCGGGCGTTGGGATCCCATTTTGTTTAAAAGGGAGGATGGTCCAAGCTG TTATACACACCTATAGGGGCTTACGTTACGTATGGTGCCATACCATGTCA TGTCATGTACGATGTTATGTGGTCATGGTACCAGTAAGTGTCTTTGTCCT GAGCGATATCCTGGTAATAGGATATCTTTGATTTGCTCTGTGAGCGAATC ATATTTTTTCTACTACTTAATTTTGTGTCGTATTTATCCCCCCTGGCGTT TGTATAATTGTTCGTCGACCCACTTCAGATAATGTCTGAGGTGACACCAG TTCTTCCCATCTCCTGCCGGTCCTTGCTTCTAACCTTTGTCACGCATTGT GTTTCAGGATTTCCACGGCTAACTGATTTTTGAGGTCGTAAACATGCATG TACGTGTGCTTCTCTTCGTCCTCGTTGTAAAATACTGTACTGTCCAGGAA GAAGTACATTTCTTGATTGAAATCAGTTCCCGTGGTCATTCGCCCATCTG ACCACACAGGGCGTCAACACTCAGCCGATCGGCTGTAACTGTGAAAATAA ATCAAACGTAATAACTCTAAAATATAGTTCTCTGTAATAGTAAAAATGGA GCGAGTCCAGAGATTGATCTTCACTTCCCGACGATACCTCGTGCCCACGT CTTGTCCAGGCCGCACTTGATGCGTCGGGGAAGGGCGGAAAGGGCGGTGG AAAAGGCGATCGCGCGCAAGGCATCAGCCAGGGCGTGGACACCCTGGACA AGGCCATGGAGGCCGCGCGTGATCCCGCGTTCTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig10404:359..4393+

>mRNA_S-dermatodea_contig10404.296.1 ID=mRNA_S-dermatodea_contig10404.296.1|Name=mRNA_S-dermatodea_contig10404.296.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1308bp|location=Sequence derived from alignment at S-dermatodea_contig10404:359..4393+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTTGGAATCGCCAAGGGTGTACGGCGGATCGTCGCCGTAACTCGTGG
GCTGGCTCAGGGCGCGCGAGAGAGGGCCGCGGCTTTCGAGCAGCAGCTGG
AAGCGGCCGATGCGATCAACGACCTCGCCCTCGACATCACGCAGGTTGGA
ATCGCCAAGGGTGTACGGCGGATCGTCGCCGTAACTCGTGGGCTGGCTCA
GGGCGCGCGAGAGAGGGCCGCGGCTTTCGAGCAGCAGCTGGAAGCGGCCG
ATGCGATCAACGACCTCGCCCTCGACATCACGGTTCGACGTCTGGGCGCG
GAGCTGGACACGTCCGTGTTTTCCCTGAAGGCGAAGAACAAGTTCCGTGC
TCGTCTCGCGAAGCTCGTGCAAAAGGTTCGACGTCTGGGCGCGGAGCTGG
ACACGTCCGTGTTTTCCCTGAAGGCGAAGAACAAGTTCCGTGCTCGTCTC
GCGAAGCTCGTGCAAAAGGCCAAGACCATCAAGAAGAAAGTGATGGAGGA
GCGAGTGGGGCAGGCGGTGAACTCGGGCAAGGCCGAAGCGGAGAAAATGA
AGGAGGCCGGCGAAAACAAGGCCAAGACCATCAAGAAGAAAGTGATGGAG
GAGCGAGTGGGGCAGGCGGTGAACTCGGGCAAGGCCGAAGCGGAGAAAAT
GAAGGAGGCCGGCGAAAACAAGCTGGTTTTCCGCGCGGACTTCGGGTGCG
ACGCAAAGTCTGCCGCGAAGATCCTTGCGGAGGTGTCCAAGGCCTGCCCC
CACCTGCTGGTTTTCCGCGCGGACTTCGGGTGCGACGCAAAGTCTGCCGC
GAAGATCCTTGCGGAGGTGTCCAAGGCCTGCCCCCACCTGGCGTCGTTGA
TGCTCTTCACCGCCGACGAGGAGGCTGACCGGTGGTTGTGTTGCGGGCTC
ATCCCGAACTCTAAGGCTGCGAAGAAGGATGCCAACAAATGGGTGCAGGC
GTCGTTGATGCTCTTCACCGCCGACGAGGAGGCTGACCGGTGGTTGTGTT
GCGGGCTCATCCCGAACTCTAAGGCTGCGAAGAAGGATGCCAACAAATGG
GTGCAGGCCGCACTTGATGCGTCGGGGAAGGGCGGAAAGGGCGGTGGAAA
AGGCGATCGCGCGCAAGGCATCAGCCAGGGCGTGGACACCCTGGACAAGG
CCATGGAGGCCGCGCGTGATCCCGCGTTCTGAGCCGCACTTGATGCGTCG
GGGAAGGGCGGAAAGGGCGGTGGAAAAGGCGATCGCGCGCAAGGCATCAG
CCAGGGCGTGGACACCCTGGACAAGGCCATGGAGGCCGCGCGTGATCCCG
CGTTCTGA
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