mRNA_S-dermatodea_contig10402.295.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10402.295.1
Unique NamemRNA_S-dermatodea_contig10402.295.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10402.295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10402contigS-dermatodea_contig10402:1830..6052 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionPeptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family
Ec32 orthologEc-04_003010.2
Exons2
Model size245
Cds size225
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10402.295.1prot_S-dermatodea_contig10402.295.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10402 1848..6052 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924155.8920264-UTR-S-dermatodea_contig10402:1829..18471622924155.8920264-UTR-S-dermatodea_contig10402:1829..1847Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10402 1830..1847 +
1694079055.8767664-UTR-S-dermatodea_contig10402:1829..18471694079055.8767664-UTR-S-dermatodea_contig10402:1829..1847Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10402 1830..1847 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924155.9031081-CDS-S-dermatodea_contig10402:1847..20051622924155.9031081-CDS-S-dermatodea_contig10402:1847..2005Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10402 1848..2005 +
1694079055.8903496-CDS-S-dermatodea_contig10402:1847..20051694079055.8903496-CDS-S-dermatodea_contig10402:1847..2005Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10402 1848..2005 +
1622924155.9155848-CDS-S-dermatodea_contig10402:5985..60521622924155.9155848-CDS-S-dermatodea_contig10402:5985..6052Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10402 5986..6052 +
1694079055.901049-CDS-S-dermatodea_contig10402:5985..60521694079055.901049-CDS-S-dermatodea_contig10402:5985..6052Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10402 5986..6052 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10402.295.1

>prot_S-dermatodea_contig10402.295.1 ID=prot_S-dermatodea_contig10402.295.1|Name=mRNA_S-dermatodea_contig10402.295.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=75bp
MRRTSASAMRGQPRLVCAIAASLAVSICGLSGLVGSFLVRSPCGSSLTPR
IAGRARGPIVARPPSTLAATTAGAA
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mRNA from alignment at S-dermatodea_contig10402:1830..6052+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10402.295.1 ID=mRNA_S-dermatodea_contig10402.295.1|Name=mRNA_S-dermatodea_contig10402.295.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4223bp|location=Sequence derived from alignment at S-dermatodea_contig10402:1830..6052+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGACAGGCGGCCAGAAGCATGCGACGAACAAGCGCAAGCGCCATGAGAGG
CCAGCCCAGGCTTGTATGCGCGATCGCAGCCTCCCTGGCGGTGTCCATAT
GTGGCCTCAGCGGCCTCGTGGGTTCATTCCTCGTCCGCAGCCCTTGTGGA
TCGTCTCTGACACCAAGAATCGCAGGGTAAGTTTCTGCGACGTGTCCCAA
GTCACAGCTCGCGAGCTGACTTTACTGCGAGGGGCGTTGGGTAGAATAGC
GTCTGCTTAATGGGGTGCTGCGCTTCGGATCTGGAGTGTGTAGTAGGGTG
GGATGTGATGCAGTTTTGGCGTGTGGTCTCTTGAACTCGCGCGATCTGTC
AACTAGAACTCTGCTTGCTGCTGACGCTTTGAGGCAATCCCTCTCACGTA
TTACCTACGTATATAATGTATGAGCAAACAGCAGTATTGGCTGTGACTCA
ATACCTAATCTCTATTCTTTATAATAATAGTATTTGACGTCAAGGGTCAA
GATTACCACCCCTGACGCTCACTGCTCTGCTGTATAGATTCAAGTACTTT
ATATACGCGCTAAGGCGTGTATGGCACCATGAATATCTGATGCATATCTT
TTGAGATCAACTTACATAACAGACCCCTACGCCTATTTAGGTTTTCGAGC
CTTAACGGCCGATACCTTACAGTAGATCAGCCAACACGTTTTGTGAGCGC
GGCATCGCGGGGTGTAGCCTACCGCCCTCACCTTCAAACTCTCAAGCAAG
GGTCGCGAAATAATGCTGGCCTGCTACACACAGACAACAGATTCGCCGTA
CGATACAAGTACTTGTTCTGCTTTGGTGTGCGGCGCCCCCTAATCGCAGC
AGGAGCCGCCAATCTTAATAGTGCTGTAAAGCAGTTTACACACGGCGGTA
ATCAGGACCAAAATGTAACTGTCGCTTAAAGTGTCCCCAGCATAACGAAC
CATACTTGTAGATCAATCTGATCTGCAATGTGTGGCATTTTTACGACATG
TTAACAAAAAACAAAAAACACAATCTATTTACAGCAGTAGCTCTAGAGCT
ATAGTTCCCACGTACATCCTAACTCACTGGCACACTGTTTCGGGGGAAAC
TGAAAGTACTAACGTCCTTTACTCTCTCAGTAGGGATACATGTGCCGGGG
GGGACTAAAACTGTACAGGTGGGCTCGTAGCGTGCATACATCGCGCGACA
GCAAAACGAAATCCTGCATCATCTCCAAATCGCGAGTCATCACGAATCCC
CGCGTTTATGTACCGCCGGTCAACAGAAATTCTCGGGGGGTGCCCCACCT
GTGATTCTGTCCACGTGCCACAATTTGCAAATGGGGAGACATTCGAAGCA
GAAGGGAATGAGCAGGTAGTGCAGATTAATGAGATGAACAAGGTACACAG
TATTTATGTTATATTGACAACAGCAGTATAAACAATTACTACATTATAAT
CATATACGACTGTTACCCTGCCCAGTATCAATCCCTTGTCCTTGGTGAGC
TGAGAGATGTCTTCAATCTTGCGGCATGAAACGTCTAATTAAAACCTACG
GGGACAAATGAGTACAAAACAGAGTAGAAGTACTTGTACAAGGTGTGTGT
TCGCGCCATTGAACAAAAAATTGGTCCTGACTACTCTCGTGTAGCTGCGT
ATTTGACATTTGTATTTTCTTGCTTCACGCAGCTCTTAACCCTTTTGGGA
CTAAGGCTGTTGTCGGGTAAGTGTTTGCTATTATTATTTACCCTTTTGTG
AGTAAGCCTGGGGACGAAGCCTGTTTTCGGGTAACTGTTGGCTACAACAA
TACCAAGGTAGCAAGCAGTTACCCGAAAACAGCCTTAGTCCTAAAACAAA
AGCAATAGCAAACAGTTACCCGAAAACAGCCTTAGTCCCAAAAGGGTTAA
AGCAGGATCTATCTCCGTGTATACTACACTGCTAGTGAACCTCATGGTGA
TCTTCTTTTTCGCGTGATGCATCATATGATACACAACCCTGGCATAGTTC
GCTGCTCTACCTTTCATATACTGTACCTACCTATTGCATGATATTATATG
GTAGATTGATGACAGGCAGCACGTCAGACAGAAATCCTGTAGCTCGTGCT
TGTATCATAGCACATTCTTGTGATAGTTCTCCAACAATCAGGGGGTCAGG
CGCTCCGGGCGGCGTGCGGGTTATTATATCTCTGCCATGCCTGGCCATCA
GTTTTTTGTTCGGTGTAGGGGTGCTGGATTTTAATTGCTCTTGTGCATCA
ATGTGACCACGAGATAGCGGGATCAGCATCCACTTTTGCTATTGCAAAAA
TGGCGGGCCGGTCGGTTGTAAGTGTGAAAATCAAATCAATCAATCAATAC
CTGTACCTTTATTCAGAGTTAATTGTACCTTTACTGAGAGAGAAGGAAGT
ACAGTATTGTAGTACTATTAATAGTATCAAACAGCAGTACCTACGCTCGC
TCTCAACCCGGGAGGCGGTGTGCTTGTGTGTGCGTCGGTGTTCGGCTGTA
CTATCACAGTGGGTAGCCACGGCTACGCCCGTGAAGTGTTCGTAGGCACA
AGTTGATATTATTTGATTTGCCCACACGTATAGCCGATCGGCGTAATCCG
ATCCGACTTGTGGTCAGATACGCAAAAGAGTCAAGGAGAAAAATAATTAA
TGATAACTCTACTTCTACTATACACCGTACCGTCCCTGGCACTTACTCAT
GGCACGAGAAGGAAGAAAGAGTACCCCAGATATAGAAAAAACGCTAGAAG
AGGACTCGGACTCGGACAATGCTCCCTCGCCTCTCCACAGGTCCTTATAG
TACTACGGCCAGCTGCAACGCGGCAGGGACATCAGTAGAGGAGTTAGAGA
AGATGGAAAATAGAAAATAGAGAGAAGAAGGACAGAAGAAAGACAGACAA
ACAGAAAGGCAGAGAAAGATAATCAAGAACCAAGAAAAATAAATACATAA
AAGCCGACACAAACACGCTGAGCCAGTAAAAAAAAGAAACAAATCTCCAA
CGCCCATTCAATTCTAGTCGACGTAACATCGTCTGATCCGCGGCAGCGTC
TCGTCAGTGGCGGCGCAGTGAGTTTGCCGGGTCGTGCGCGTCTCACTTTT
CTCAATCCCGGTTCTACAGCAACATTTGCCCTCCCCCTTCGCTCGCTTCG
CGGCCTCCGCGGTTTCCGCCCCTGGCCTCCCTCTAAAAGAACCAGTCTAA
AAATATATTACGTCATTTGGCATCACCAGTTGTCTAGGAAATTCGACATT
CGGCATCACAGGTCAACTCTAAATCACTGCTGTACTGACCTGTACTTGTA
CTGTATTAAAAAACGTGACAAAAGCCGTTGATAGATTGATTGATTGATTG
ATTGATTTGCACACGTATAGCCGATCGGCTTAATCCACCCGACTTGTGGT
CAGATACTATAGCAAAGAGTCAAGGAGAAAAATAACTAATCAGAGCTCTA
CTTCTACTATACTACCGTACCGTCCCTGGTACTTCCTATGGTACAAGAAA
TAAGCAATAGTAGCCGTACTTGGATTGTACAATATGTTAGAGGTCTTCTT
CTGTTTCCGCCTCCACTCCGCTCCCACCGCTAATATACATAAAAAACAGG
AAAATATTTTGCTACAATCCTCTCCACCTCCGCCGTAATAGTTTTTGACA
ACCACCACCACCAACAACAACACCACAACCACCACCACCACCACCACCAC
CACCACCAACCCTCCACACGTACCGTAGCCCCCCCCCACCCACCCACCGA
ACGCACCACGGCGATTCGCGCTTGGTGAATCCGAGCCTGGTCCGGCGAAA
ACCCGGCGTGCTCCGTCCCGACTTTGTAGGGATCCGAGGTCTATGCTCTA
ACGACCACGGCATGCACGATCAAGGATTACACCCCCCCCACCGACCCACC
CCCCATATACTGAGGGATCATAAATGGGCTGAGAAGGCGATAAGTGATAT
TGGCAGGATACGAAAAACAATTTTTCGCCACCTTTGGCAGAGTAGGAAGG
AACGATCGGCCATCGGCGATAGATAGATCGATCCTGTGGGAACAATCCTC
CGTTCCTCTCGAGGACGGACGGCGTGGTCGATGGCCTAACAGCTAAGGCA
TGCAAAAAATAAGTACGCCTCCCCCCCCTCCCCCACCCCCCCCCATTCCG
AACCAGACGCGCAAGAGGGCCGATCGTCGCGCGACCACCGTCAACTCTGG
CCGCCACAACCGCGGGGGCAGCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10402:1830..6052+

>mRNA_S-dermatodea_contig10402.295.1 ID=mRNA_S-dermatodea_contig10402.295.1|Name=mRNA_S-dermatodea_contig10402.295.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at S-dermatodea_contig10402:1830..6052+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGACGAACAAGCGCAAGCGCCATGAGAGGCCAGCCCAGGCTTGTATG
CGCGATCGCAGCCTCCCTGGCGGTGTCCATATGTGGCCTCAGCGGCCTCG
TGGGTTCATTCCTCGTCCGCAGCCCTTGTGGATCGTCTCTGACACCAAGA
ATCGCAGGATGCGACGAACAAGCGCAAGCGCCATGAGAGGCCAGCCCAGG
CTTGTATGCGCGATCGCAGCCTCCCTGGCGGTGTCCATATGTGGCCTCAG
CGGCCTCGTGGGTTCATTCCTCGTCCGCAGCCCTTGTGGATCGTCTCTGA
CACCAAGAATCGCAGGACGCGCAAGAGGGCCGATCGTCGCGCGACCACCG
TCAACTCTGGCCGCCACAACCGCGGGGGCAGCGACGCGCAAGAGGGCCGA
TCGTCGCGCGACCACCGTCAACTCTGGCCGCCACAACCGCGGGGGCAGCG
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