mRNA_S-dermatodea_contig10396.287.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10396.287.1
Unique NamemRNA_S-dermatodea_contig10396.287.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10396.287.1 vs. uniprot
Match: A0A6T8I8D6_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6T8I8D6_HEMAN)

HSP 1 Score: 135 bits (341), Expect = 4.620e-38
Identity = 76/148 (51.35%), Postives = 89/148 (60.14%), Query Frame = 1 
Query:   10 FETPVGRALREVSTSNQWSTLTGVLTKVNKRLLARQQVDARTLARLLASEPATELARNGVWTTSFGAKYIPIVVVNRAYAR--KVAQGGEQGRCSCGQGGRRGSGSSRFFGSQDYNAGRYALEASAHSLRCLCWTPPTTGHLHSWRRG 447
             E+ +G AL    TSNQWS L GV TKVNK+L    QV  R L   L      EL ++G+W TSFGAKY+PI+VVN A  R  ++  G E   CSCG   +R     RF  S  YNAGR+AL AS+H   C  WTPP T HLHSWRRG
Sbjct:    1 MESELGHALASTGTSNQWSMLDGVTTKVNKKLPKDMQVTPRQLDAFLQQVGDAELRKHGIWRTSFGAKYMPIIVVNPALGRILRLCNGAEP-PCSCGALNQR---EDRFLSSHAYNAGRHALVASSHKASCGQWTPPQTSHLHSWRRG 144
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BLAST of mRNA_S-dermatodea_contig10396.287.1 vs. uniprot
Match: A0A061S7L3_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S7L3_9CHLO)

HSP 1 Score: 122 bits (305), Expect = 2.590e-32
Identity = 71/149 (47.65%), Postives = 92/149 (61.74%), Query Frame = 1 
Query:    1 KQLFETPVGRALREVSTSNQWSTLTGVLTKVNKRLLARQQVDARTLARLLASEPATELARNGVWTTSFGAKYIPIVVVNRAYARKVAQGGEQGRCSCGQGGRRGSGSSRFFGSQDYNAGRYALEASAHSLRCLCWTPPTTGHLHSWRRG 447
            KQ    PV  +L+ +ST NQWS L+ ++ K+NKR+     V  + +A+ L   P+  L +NGVW  SFG+KY PIV VN AY R  +   +   CSC +G  R S  + +F SQ YNAGR+A  AS H   C  WTPP+TGHLHSWRRG
Sbjct:   29 KQEAPDPVVDSLKTISTRNQWSLLSTLVKKLNKRIATPMTV--KEVAKHLLLVPSEVLRKNGVWVHSFGSKYEPIVCVNPAYGRVNSSEEDIPACSC-KGIDRDS--NVYFSSQAYNAGRHACTASLHIASCSQWTPPSTGHLHSWRRG 172
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BLAST of mRNA_S-dermatodea_contig10396.287.1 vs. uniprot
Match: A0A7S1X7L8_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X7L8_9CHLO)

HSP 1 Score: 87.0 bits (214), Expect = 5.520e-19
Identity = 55/153 (35.95%), Postives = 75/153 (49.02%), Query Frame = 1 
Query:   10 FETPVGRALREVSTSNQWSTLTGVLTKVNKRLLARQQVDARTLARLLASEPATELARNGVWTTSFGAKYIPIVVVNRAYARKVAQGG--EQGRCSC---GQGGRRGSGSSRFFGSQDYNAGRYALEASAHSLRCLCWTPPTTGHLHSWRRGVD 453
             E+ +G++L  V TSNQWS L GV  KV +          + +   L++     L  +G+W    G  +I  +  N  Y R   QG   E   CSC     G      + ++FGS DYNAGR+A   + H   C  W PPT+ HLHSWRRG +
Sbjct:    1 MESDIGQSLLNVRTSNQWSLLDGVARKVKR--------PTKEVHDFLSTVDDETLRVHGIWKHRVGKCFI--ICTNPGY-RLALQGAAEEADECSCCCESSGSIESRAAKQYFGSFDYNAGRHAQHTTGHKSTCPFWAPPTSSHLHSWRRGYE 142
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BLAST of mRNA_S-dermatodea_contig10396.287.1 vs. uniprot
Match: A0A1Q9EC58_SYMMI (Uncharacterized protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9EC58_SYMMI)

HSP 1 Score: 68.6 bits (166), Expect = 1.130e-10
Identity = 28/43 (65.12%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:  325 RFFGSQDYNAGRYALEASAHSLRCLCWTPPTTGHLHSWRRGVD 453
            R+F SQ YNAGR++ EAS H   C  W PPTTGHLHSWRR  D
Sbjct:  262 RYFNSQAYNAGRHSHEASGHVASCAQWQPPTTGHLHSWRRAFD 304
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BLAST of mRNA_S-dermatodea_contig10396.287.1 vs. uniprot
Match: A0A7S1Z277_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z277_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.620e-9
Identity = 25/45 (55.56%), Postives = 30/45 (66.67%), Query Frame = 1 
Query:  319 SSRFFGSQDYNAGRYALEASAHSLRCLCWTPPTTGHLHSWRRGVD 453
            S R+F S DYNAGR+    S H   C  W PP++GHLHSWRRG +
Sbjct:  198 SKRYFNSLDYNAGRHGETTSKHHASCAAWNPPSSGHLHSWRRGYN 242
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10396.287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6T8I8D6_HEMAN4.620e-3851.35Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A061S7L3_9CHLO2.590e-3247.65Uncharacterized protein (Fragment) n=1 Tax=Tetrase... [more]
A0A7S1X7L8_9CHLO5.520e-1935.95Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A1Q9EC58_SYMMI1.130e-1065.12Uncharacterized protein n=1 Tax=Symbiodinium micro... [more]
A0A7S1Z277_9STRA1.620e-955.56Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10396contigS-dermatodea_contig10396:6007..6462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size456
Cds size456
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924155.134204-CDS-S-dermatodea_contig10396:6006..64621622924155.134204-CDS-S-dermatodea_contig10396:6006..6462Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10396 6007..6462 -
1694079055.3475642-CDS-S-dermatodea_contig10396:6006..64621694079055.3475642-CDS-S-dermatodea_contig10396:6006..6462Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10396 6007..6462 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10396.287.1prot_S-dermatodea_contig10396.287.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10396 6007..6462 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10396.287.1

>prot_S-dermatodea_contig10396.287.1 ID=prot_S-dermatodea_contig10396.287.1|Name=mRNA_S-dermatodea_contig10396.287.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=152bp
KQLFETPVGRALREVSTSNQWSTLTGVLTKVNKRLLARQQVDARTLARLL
ASEPATELARNGVWTTSFGAKYIPIVVVNRAYARKVAQGGEQGRCSCGQG
GRRGSGSSRFFGSQDYNAGRYALEASAHSLRCLCWTPPTTGHLHSWRRGV
D*
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mRNA from alignment at S-dermatodea_contig10396:6007..6462-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10396.287.1 ID=mRNA_S-dermatodea_contig10396.287.1|Name=mRNA_S-dermatodea_contig10396.287.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=456bp|location=Sequence derived from alignment at S-dermatodea_contig10396:6007..6462- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGCAACTCTTCGAAACACCCGTCGGACGCGCACTGCGCGAAGTCAGCAC
GTCCAACCAGTGGTCGACCCTCACAGGCGTCCTCACCAAGGTGAACAAAA
GGCTGCTCGCACGGCAGCAGGTGGACGCGAGGACCCTGGCCAGGCTCTTG
GCCTCCGAGCCTGCCACGGAGCTCGCGAGGAATGGCGTGTGGACGACAAG
CTTCGGCGCCAAGTACATACCAATCGTTGTAGTCAACCGCGCGTACGCTC
GGAAGGTGGCCCAAGGCGGGGAGCAAGGCCGTTGCTCGTGCGGACAAGGC
GGGCGGCGTGGCTCAGGCTCGTCACGCTTCTTTGGGTCCCAGGACTACAA
CGCCGGCAGGTATGCTCTGGAGGCGAGCGCCCACAGCCTCAGATGCCTCT
GCTGGACGCCACCAACTACAGGCCATCTACACAGCTGGAGAAGGGGGGTT
GACTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10396:6007..6462-

>mRNA_S-dermatodea_contig10396.287.1 ID=mRNA_S-dermatodea_contig10396.287.1|Name=mRNA_S-dermatodea_contig10396.287.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at S-dermatodea_contig10396:6007..6462- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGCAACTCTTCGAAACACCCGTCGGACGCGCACTGCGCGAAGTCAGCAC
GTCCAACCAGTGGTCGACCCTCACAGGCGTCCTCACCAAGGTGAACAAAA
GGCTGCTCGCACGGCAGCAGGTGGACGCGAGGACCCTGGCCAGGCTCTTG
GCCTCCGAGCCTGCCACGGAGCTCGCGAGGAATGGCGTGTGGACGACAAG
CTTCGGCGCCAAGTACATACCAATCGTTGTAGTCAACCGCGCGTACGCTC
GGAAGGTGGCCCAAGGCGGGGAGCAAGGCCGTTGCTCGTGCGGACAAGGC
GGGCGGCGTGGCTCAGGCTCGTCACGCTTCTTTGGGTCCCAGGACTACAA
CGCCGGCAGGTATGCTCTGGAGGCGAGCGCCCACAGCCTCAGATGCCTCT
GCTGGACGCCACCAACTACAGGCCATCTACACAGCTGGAGAAGGGGGGTT
GACTAGAAGCAACTCTTCGAAACACCCGTCGGACGCGCACTGCGCGAAGT
CAGCACGTCCAACCAGTGGTCGACCCTCACAGGCGTCCTCACCAAGGTGA
ACAAAAGGCTGCTCGCACGGCAGCAGGTGGACGCGAGGACCCTGGCCAGG
CTCTTGGCCTCCGAGCCTGCCACGGAGCTCGCGAGGAATGGCGTGTGGAC
GACAAGCTTCGGCGCCAAGTACATACCAATCGTTGTAGTCAACCGCGCGT
ACGCTCGGAAGGTGGCCCAAGGCGGGGAGCAAGGCCGTTGCTCGTGCGGA
CAAGGCGGGCGGCGTGGCTCAGGCTCGTCACGCTTCTTTGGGTCCCAGGA
CTACAACGCCGGCAGGTATGCTCTGGAGGCGAGCGCCCACAGCCTCAGAT
GCCTCTGCTGGACGCCACCAACTACAGGCCATCTACACAGCTGGAGAAGG
GGGGTTGACTAG
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