mRNA_S-dermatodea_contig10395.286.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10395.286.1
Unique NamemRNA_S-dermatodea_contig10395.286.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10395.286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10395contigS-dermatodea_contig10395:4267..4773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size507
Cds size378
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924155.018504-UTR-S-dermatodea_contig10395:4266..43951622924155.018504-UTR-S-dermatodea_contig10395:4266..4395Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10395 4267..4395 +
1694079055.2771404-UTR-S-dermatodea_contig10395:4266..43951694079055.2771404-UTR-S-dermatodea_contig10395:4266..4395Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10395 4267..4395 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924155.0341895-CDS-S-dermatodea_contig10395:4395..47731622924155.0341895-CDS-S-dermatodea_contig10395:4395..4773Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10395 4396..4773 +
1694079055.285099-CDS-S-dermatodea_contig10395:4395..47731694079055.285099-CDS-S-dermatodea_contig10395:4395..4773Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10395 4396..4773 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10395.286.1prot_S-dermatodea_contig10395.286.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10395 4396..4773 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10395.286.1

>prot_S-dermatodea_contig10395.286.1 ID=prot_S-dermatodea_contig10395.286.1|Name=mRNA_S-dermatodea_contig10395.286.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=126bp
MVTAGEQAATTPRAGRGCVLLCLSPVLCIFPHTLVDCTPLRPRTFITRHV
LVVLSMWCSVVLHFGKIDRWGGLRSNKHRTRTHKTHTKRDPRRFKTHRTH
TGYTIPRGGGGKHTNTKKKNMHVIT*
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mRNA from alignment at S-dermatodea_contig10395:4267..4773+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10395.286.1 ID=mRNA_S-dermatodea_contig10395.286.1|Name=mRNA_S-dermatodea_contig10395.286.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=507bp|location=Sequence derived from alignment at S-dermatodea_contig10395:4267..4773+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCCTCCCGACACACACACACACACCCCAGTGCGGTGCGGGCCGAGCGCG
CGCTTAAATAGGTGGATTTTAGAACGCCCGGATCGAGGGATCATCTTATG
CACAGCGGAGATCGCCGCTGCATTGGCCGATGGTGACGGCTGGGGAGCAA
GCGGCCACGACGCCGAGAGCCGGAAGGGGGTGTGTTTTACTCTGTCTGAG
CCCTGTTCTATGCATATTTCCACACACGCTCGTTGATTGCACCCCTCTCC
GTCCAAGAACTTTTATTACTAGGCATGTGCTTGTCGTCCTAAGCATGTGG
TGTAGTGTAGTACTACATTTTGGCAAAATCGACAGGTGGGGGGGTCTGAG
AAGCAACAAACACAGAACACGCACGCACAAGACGCACACAAAACGAGACC
CAAGGCGGTTTAAGACGCACCGCACACATACAGGATACACGATCCCCCGC
GGGGGGGGGGGCAAACACACCAACACAAAAAAAAAAAACATGCATGTTAT
CACATGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig10395:4267..4773+

>mRNA_S-dermatodea_contig10395.286.1 ID=mRNA_S-dermatodea_contig10395.286.1|Name=mRNA_S-dermatodea_contig10395.286.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at S-dermatodea_contig10395:4267..4773+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTGACGGCTGGGGAGCAAGCGGCCACGACGCCGAGAGCCGGAAGGGG
GTGTGTTTTACTCTGTCTGAGCCCTGTTCTATGCATATTTCCACACACGC
TCGTTGATTGCACCCCTCTCCGTCCAAGAACTTTTATTACTAGGCATGTG
CTTGTCGTCCTAAGCATGTGGTGTAGTGTAGTACTACATTTTGGCAAAAT
CGACAGGTGGGGGGGTCTGAGAAGCAACAAACACAGAACACGCACGCACA
AGACGCACACAAAACGAGACCCAAGGCGGTTTAAGACGCACCGCACACAT
ACAGGATACACGATCCCCCGCGGGGGGGGGGGCAAACACACCAACACAAA
AAAAAAAAACATGCATGTTATCACATGAATGGTGACGGCTGGGGAGCAAG
CGGCCACGACGCCGAGAGCCGGAAGGGGGTGTGTTTTACTCTGTCTGAGC
CCTGTTCTATGCATATTTCCACACACGCTCGTTGATTGCACCCCTCTCCG
TCCAAGAACTTTTATTACTAGGCATGTGCTTGTCGTCCTAAGCATGTGGT
GTAGTGTAGTACTACATTTTGGCAAAATCGACAGGTGGGGGGGTCTGAGA
AGCAACAAACACAGAACACGCACGCACAAGACGCACACAAAACGAGACCC
AAGGCGGTTTAAGACGCACCGCACACATACAGGATACACGATCCCCCGCG
GGGGGGGGGGCAAACACACCAACACAAAAAAAAAAAACATGCATGTTATC
ACATGA
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