mRNA_S-dermatodea_contig10395.285.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10395.285.1
Unique NamemRNA_S-dermatodea_contig10395.285.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10395.285.1 vs. uniprot
Match: A0A7S3XRA9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XRA9_HETAK)

HSP 1 Score: 63.5 bits (153), Expect = 1.710e-8
Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 3 
Query:   57 GGAGEFFDPSFVQSLLGQIPHLDPNDPRIQAAVDEVGGAAKKDGDDKEPEDDGKE 221
            GGA +F DP+FV SLLG +P +DP+DP+IQAA+ ++GG+  K  D  + +DD KE
Sbjct:   84 GGAQQFLDPAFVNSLLGSLPGVDPSDPKIQAALQQIGGSDAKQEDKDKKDDDKKE 138
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BLAST of mRNA_S-dermatodea_contig10395.285.1 vs. uniprot
Match: A0A7S2HGQ0_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2HGQ0_9DINO)

HSP 1 Score: 56.2 bits (134), Expect = 3.340e-6
Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = 3 
Query:   72 FFDPSFVQSLLGQIPHLDPNDPRIQAAVDEVGGAAKKDGD 191
            F DPSFVQ LLG +P +D NDPRIQ A+ EVGG  KK+G+
Sbjct:   55 FQDPSFVQELLGSLPGVDINDPRIQMALAEVGGDEKKEGE 94
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BLAST of mRNA_S-dermatodea_contig10395.285.1 vs. uniprot
Match: D8LDZ0_ECTSI (VWFA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDZ0_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 5.280e-6
Identity = 30/42 (71.43%), Postives = 34/42 (80.95%), Query Frame = 3 
Query:   60 GAGEFFDPSFVQSLLGQIPHLDPNDPRIQAAVDEVGGAAKKD 185
            GAGEFFDPSFVQSLL QIP+LDP DPR+QA   + G  AKK+
Sbjct:  394 GAGEFFDPSFVQSLLDQIPNLDPKDPRLQAGGGD-GSEAKKE 434
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BLAST of mRNA_S-dermatodea_contig10395.285.1 vs. uniprot
Match: A0A7S1ZTQ3_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZTQ3_TRICV)

HSP 1 Score: 58.2 bits (139), Expect = 1.480e-5
Identity = 25/49 (51.02%), Postives = 36/49 (73.47%), Query Frame = 3 
Query:   54 DGGAGEFFDPSFVQSLLGQIPHLDPNDPRIQAAVDEVGGAAKKDGDDKE 200
            + GA +F DP FV  LLG +P +DPNDP I++A++E+    KKDGD+K+
Sbjct:  285 EAGAQQFQDPQFVNQLLGSLPGVDPNDPAIKSALEELNKGKKKDGDEKD 333
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BLAST of mRNA_S-dermatodea_contig10395.285.1 vs. uniprot
Match: A0A6H5L0L4_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0L4_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.590e-5
Identity = 45/137 (32.85%), Postives = 75/137 (54.74%), Query Frame = 3 
Query: 1107 SGKLESCSTGTASVA-----LD*LRTMSSIVSSTSSSWTDLLQAAYTPVCVPYQIVIQMGQPLIYWLSVNPPDINSPIAVRFAGVPIEIGDDSKRA*RLTTWKASAPLVR----DSVASAVFFHVTIQVSTTLLWSF 1490
            + ++E+ S+G +++A      D ++ M S+ +   +SWT   + +   + + +  ++QMGQPL +WL++NP D+NSPI +  AGV +++    K       + A A  +R    D VASA FFH TI    T L  F
Sbjct:  590 AAEMETGSSGFSALADRPGIRDLIKNMESVHA--GASWTIYNKRSTRMIAISF--IMQMGQPL-FWLTINPADVNSPIVMVLAGVELDVTSRLK-----ADFPAYADKLRFVANDPVASADFFHATIDAVLTCLLRF 716
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BLAST of mRNA_S-dermatodea_contig10395.285.1 vs. uniprot
Match: A0A6H5K8N9_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8N9_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 1.980e-5
Identity = 38/102 (37.25%), Postives = 56/102 (54.90%), Query Frame = 3 
Query: 1197 SSWTDLLQAAYTPVCVPYQIVIQMGQPLIYWLSVNPPDINSPIAVRFAGVPIEIGDDSKRA*RLTTWKASAPLVR----DSVASAVFFHVTIQVSTTLLWSF 1490
            +SWT   + +   + + +  ++QMGQPL +WL++NP D+NSPI +  AGV +++    K       + A A  +R    D VASA FFH TI    T L  F
Sbjct:  543 ASWTIYNKRSTRMIAISF--IMQMGQPL-FWLTINPADVNSPIVMVLAGVELDVTSRLK-----ADFPAYADKLRFVANDPVASADFFHATIDAVLTCLLRF 636
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10395.285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7S3XRA9_HETAK1.710e-852.73Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2HGQ0_9DINO3.340e-665.00Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]
D8LDZ0_ECTSI5.280e-671.43VWFA domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A7S1ZTQ3_TRICV1.480e-551.02Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A6H5L0L4_9PHAE1.590e-532.85Helitron_like_N domain-containing protein n=1 Tax=... [more]
A0A6H5K8N9_9PHAE1.980e-537.25Helitron_like_N domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10395contigS-dermatodea_contig10395:273..2930 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1503
Cds size213
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10395.285.1prot_S-dermatodea_contig10395.285.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10395 2597..2809 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924155.0729675-UTR-S-dermatodea_contig10395:272..3821622924155.0729675-UTR-S-dermatodea_contig10395:272..382Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10395 273..382 +
1694079055.2934403-UTR-S-dermatodea_contig10395:272..3821694079055.2934403-UTR-S-dermatodea_contig10395:272..382Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10395 273..382 +
1622924155.0832849-UTR-S-dermatodea_contig10395:1537..25961622924155.0832849-UTR-S-dermatodea_contig10395:1537..2596Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10395 1538..2596 +
1694079055.303249-UTR-S-dermatodea_contig10395:1537..25961694079055.303249-UTR-S-dermatodea_contig10395:1537..2596Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10395 1538..2596 +
1622924155.1071405-UTR-S-dermatodea_contig10395:2809..29301622924155.1071405-UTR-S-dermatodea_contig10395:2809..2930Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10395 2810..2930 +
1694079055.3269217-UTR-S-dermatodea_contig10395:2809..29301694079055.3269217-UTR-S-dermatodea_contig10395:2809..2930Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10395 2810..2930 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924155.0943344-CDS-S-dermatodea_contig10395:2596..28091622924155.0943344-CDS-S-dermatodea_contig10395:2596..2809Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10395 2597..2809 +
1694079055.3109648-CDS-S-dermatodea_contig10395:2596..28091694079055.3109648-CDS-S-dermatodea_contig10395:2596..2809Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10395 2597..2809 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10395.285.1

>prot_S-dermatodea_contig10395.285.1 ID=prot_S-dermatodea_contig10395.285.1|Name=mRNA_S-dermatodea_contig10395.285.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=71bp
MSSIVSSTSSSWTDLLQAAYTPVCVPYQIVIQMGQPLIYWLSVNPPDINS
PIAVRFAGVPIEIGDDSKRA*
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mRNA from alignment at S-dermatodea_contig10395:273..2930+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10395.285.1 ID=mRNA_S-dermatodea_contig10395.285.1|Name=mRNA_S-dermatodea_contig10395.285.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2658bp|location=Sequence derived from alignment at S-dermatodea_contig10395:273..2930+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTCCAGCGGCGGGCGCCTCCGCCTCTGGCTTGGCCGCTCCGGCGGGGGCT
GGTGATGGGGGCGCTGGAGAGTTCTTCGATCCCTCTTTTGTGCAGTCGCT
ATTGGGGCAGGTGGGTGGTGGGCATGTGTTTATGTGTGTATCGATGTATG
TATTATTTGTGTATTTTTATGTGTGTTATGTAGGAGGAGAGAGGGTGATG
CGGTATGGGTAATGCAAGTGTATATGTGCCTTTGGTATGCACAGTATCTA
TGTACTTCGAAGTTATGTGTATTTTTGTTGCATCCATGTATAATATCCAT
GTAGGAAAGAGACGTTGGTTGTATCTATTGTATGTATCTTATGTTTGTGT
AGGAAGAGAGGGAGGTGCAGTATGGGTAGGTTGTATGTATTTATGTATGT
GTGTATGGTTATGCGTCTTTGTGTGTGGATATGTCCGTAACAAGAGTGGG
TTTGCCGCGTGCCGCGCGAACGGAGGCGGTAGAGGGGGGGGGTATCTTCA
ATGTAGTATATAGTACAGCTATAGTACAGTAGGACCTTAAGAGCATCATA
TACAGCGTAGATCTCCACTGAGTTAGCTTGGGCCATATTTTTCTCTACAA
AAAGACTGGACCCAACGCTCGCTATCTCTGTGGGGGTTATAAAGCTTTGA
TTGTTTCAGGGAGGAGGCCGCCACCCCCTCCGCACACACGCCTCTCGTGG
GTTTCCGTGAAACGTTCGGTGTGAGGCCACCACCCTATTCTCCGAGAGAC
GATTCTACCTGTTTTTACCACCCCGATGCTTTCATTTACGGTGTGTACGA
TGCTATGGGAACATTGTGGAAATGTCTTTTGTCTGGGAAATATCGTGGTG
GTGTAACTCTGAACCCTCCCCTATGGTTTCAAAAACATAGAGCGAGCTTT
GGGGTCCCACCTCTTCAAAAGGGGAGACGGTCCAAGCTACACCTATGGAA
GCTCACTTATTGCGAATAATGCTATGGTTTCGTAGAAGTATCATGTTATG
TATGATGTGATACACTAGTATGGTTGTTGTACAAGTGTCTAATTGAATCC
TGAGCGATATCCTGGCAATATATCTTTGATGTGCTTTTGTGAACCAAGAG
GATATTTTCTTCTACCACATGCATTTACAGGTATCGTATTGTGTGTGTGT
GTTTTTTTTTTAGTCCTTCTGTTTATTCCCCTCACCTCAAATCTCAACCC
CCCTCTCTCTCTCTACCAATTCGCCCCGAACGGGCGGACACCCTTGCCCG
ACGATTTCCGCGCAGATTCCGCACTTGGACCCCAACGACCCTCGTATCCA
GGCGGCGGTAGACGAGGTAGGCGGGGCGGCGAAAAAAGACGGGGACGACA
AAGAGCCCGAGGATGACGGCAAAGAGTAGAAATGATAAGGTTTTACACAA
TAAAACCACAGGAGGCGGTATCTACGCATCAAAAGCACACTCTCTTTCCA
GTGTTGTTGTGTAGGATCTATCTCACCGTAGGCTCGTTGCTAGGAAGCAG
GGGAGGAGGGGGGGGAGGAGGTTGAAATGAGGTTGAAATAGGCGATAAGC
GCCGCCCGGTGGCGCATTATCTGAACACGATCGTACCGCTGGATTGATAT
TTTGGGGCGGTCGTCACTGGTTTAGCGCGTAGTGCGCGGTTTGCTGCTGT
AAGGTCCGTTTTCTATCGACGATCGCTGTGCTCTCTTCACGAAACGTGAT
TATAGAGCCAGTGCAGCGCTTTTTTTCCGACTCTCCGCCGTTTGTTCGCG
GTCGAAAAACAAATACAGAAAATACAAAAAAAATGAATCATGGTACTACA
CTTTTCCCGAAATAAATGAAATTTCACGGGGGGGGAGGGAATATGTATGT
CGACAGGAAACGGCCCTGCTGTAAATCAGGAGTAGTACGTGCAGGAGGAC
GAGAGACGGCCGAGTTGTTGCAGGAGACCAAGGCATGGCAATGTGTGTGG
TACTAGTATTAATATGATAGTACTGGGCAGTTGTAGTCCATGGGGACCGC
GAACGGTGGAACGCATGCTGCAGTGATGCATACAATTACACTGGATGGGG
GACGCAAAACAAGGTGCGGCGATGTCTATTTTTTTTTTTATCGGCCGGGT
TACCCGTTAACCACTTAATCAACGGCTGGCCCATCTGAATAATTCTTGAT
ATGGCACACATACATGCGTGTAGGCCGGTTGTAATGGCCAGTCCATACGA
AAATTTTCGAGCGCAACGCCATAAATAACCACTTGACAATTGTCCTCACA
GCAGCAGAAGCAGCGGCAAGCTCGAGTCGTGCTCTACAGGAACGGCCTCT
GTCGCTCTCGATTAGCTGCGAACTATGAGCTCCATCGTCAGTTCTACATC
ATCATCATGGACTGACTTATTGCAAGCGGCCTACACGCCTGTATGTGTGC
CATATCAAATTGTTATCCAGATGGGCCAGCCGTTGATTTATTGGTTATCT
GTTAACCCGCCCGATATCAATAGCCCGATCGCCGTGCGCTTTGCCGGTGT
TCCCATCGAGATCGGCGATGATAGTAAAAGGGCATAACGCCTGACTACAT
GGAAAGCCTCCGCACCCCTTGTGCGGGATTCCGTTGCGTCTGCTGTTTTT
TTTCACGTCACTATACAAGTATCGACGACGCTGTTGTGGAGTTTTTGCTG
AGGTGTGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig10395:273..2930+

>mRNA_S-dermatodea_contig10395.285.1 ID=mRNA_S-dermatodea_contig10395.285.1|Name=mRNA_S-dermatodea_contig10395.285.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at S-dermatodea_contig10395:273..2930+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGCTCCATCGTCAGTTCTACATCATCATCATGGACTGACTTATTGCA
AGCGGCCTACACGCCTGTATGTGTGCCATATCAAATTGTTATCCAGATGG
GCCAGCCGTTGATTTATTGGTTATCTGTTAACCCGCCCGATATCAATAGC
CCGATCGCCGTGCGCTTTGCCGGTGTTCCCATCGAGATCGGCGATGATAG
TAAAAGGGCATAAATGAGCTCCATCGTCAGTTCTACATCATCATCATGGA
CTGACTTATTGCAAGCGGCCTACACGCCTGTATGTGTGCCATATCAAATT
GTTATCCAGATGGGCCAGCCGTTGATTTATTGGTTATCTGTTAACCCGCC
CGATATCAATAGCCCGATCGCCGTGCGCTTTGCCGGTGTTCCCATCGAGA
TCGGCGATGATAGTAAAAGGGCATAA
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