mRNA_S-dermatodea_contig1037.275.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1037.275.1
Unique NamemRNA_S-dermatodea_contig1037.275.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig1037.275.1 vs. uniprot
Match: D7G5U1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U1_ECTSI)

HSP 1 Score: 243 bits (620), Expect = 2.840e-75
Identity = 118/172 (68.60%), Postives = 138/172 (80.23%), Query Frame = 2 
Query:    2 DWRIVGGFWVGFMAWAAGVAGTCVSISENSGGFPTAVFFFQSFLCLVAAILSLVLIEGRAYAKVRDTEGNCFDASSCLGGACGSYDCVCWKPDGSEDCDVGTSQRVCLTFLGDKDCDQIGDSEALLLASSVLHIIIIALAALAIFTSFATCCCCKFTVLLRNENGVTRIHRL 517
            DW+  GGFWVGFMA AAGVAGTCVSI+E+SGGFPTA FFFQS +CLVAA LSLVL++G  Y+KV+ TEGNC D SSCL   CG YDCVCW+PDGS DC  GTS R CL + G   CD+I DSE+LL AS+ LHIII+AL A+A+  + ATCC CK+TVLLR E+GVTR+HRL
Sbjct:   71 DWKYAGGFWVGFMALAAGVAGTCVSITEHSGGFPTAAFFFQSAMCLVAATLSLVLVDGLVYSKVQSTEGNCVDTSSCLDDICGGYDCVCWEPDGSTDCFDGTSTRTCLQYQG-SSCDEIEDSESLLAASTFLHIIIMALVAIAMLVTSATCCGCKYTVLLRREDGVTRVHRL 241
[Close]
BLAST of mRNA_S-dermatodea_contig1037.275.1 vs. uniprot
Match: A0A6H5KT21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT21_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 7.380e-42
Identity = 73/107 (68.22%), Postives = 83/107 (77.57%), Query Frame = 2 
Query:   38 MAWAAGVAGTCVSISENSGGFPTAVFFFQSFLCLVAAILSLVLIEGRAYAKVRDTEGNCFDASSCLGGACGSYDCVCWKPDGSEDCDVGTSQRVCLTFLGDKDCDQI 358
            MA+AAGVAGTCVSI+E+SGGFPTA FFFQS +CLVAA LSLVL++G  Y+KV  TEGNC + SSCL   CG YDCVCW+PDGS DC  GTS R CL + G   CD I
Sbjct:    1 MAFAAGVAGTCVSITEHSGGFPTAAFFFQSAMCLVAATLSLVLVDGLVYSKVHSTEGNCVETSSCLDDICGGYDCVCWEPDGSTDCFDGTSTRKCLQYQGGS-CDDI 106
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1037.275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5U1_ECTSI2.840e-7568.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KT21_9PHAE7.380e-4268.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1037contigS-dermatodea_contig1037:16845..22037 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_009130.1
Exons4
Model size1224
Cds size483
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1037.275.1prot_S-dermatodea_contig1037.275.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1037 17549..22000 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924154.1156056-UTR-S-dermatodea_contig1037:16844..175481622924154.1156056-UTR-S-dermatodea_contig1037:16844..17548Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1037 16845..17548 -
1694079054.6302335-UTR-S-dermatodea_contig1037:16844..175481694079054.6302335-UTR-S-dermatodea_contig1037:16844..17548Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1037 16845..17548 -
1622924154.1732998-UTR-S-dermatodea_contig1037:22000..220371622924154.1732998-UTR-S-dermatodea_contig1037:22000..22037Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1037 22001..22037 -
1694079054.6728168-UTR-S-dermatodea_contig1037:22000..220371694079054.6728168-UTR-S-dermatodea_contig1037:22000..22037Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1037 22001..22037 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924154.1256459-CDS-S-dermatodea_contig1037:17548..177071622924154.1256459-CDS-S-dermatodea_contig1037:17548..17707Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1037 17549..17707 -
1694079054.6373632-CDS-S-dermatodea_contig1037:17548..177071694079054.6373632-CDS-S-dermatodea_contig1037:17548..17707Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1037 17549..17707 -
1622924154.1426828-CDS-S-dermatodea_contig1037:18448..185631622924154.1426828-CDS-S-dermatodea_contig1037:18448..18563Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1037 18449..18563 -
1694079054.6448894-CDS-S-dermatodea_contig1037:18448..185631694079054.6448894-CDS-S-dermatodea_contig1037:18448..18563Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1037 18449..18563 -
1622924154.1541815-CDS-S-dermatodea_contig1037:19700..197671622924154.1541815-CDS-S-dermatodea_contig1037:19700..19767Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1037 19701..19767 -
1694079054.6530735-CDS-S-dermatodea_contig1037:19700..197671694079054.6530735-CDS-S-dermatodea_contig1037:19700..19767Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1037 19701..19767 -
1622924154.1635666-CDS-S-dermatodea_contig1037:21858..220001622924154.1635666-CDS-S-dermatodea_contig1037:21858..22000Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1037 21859..22000 -
1694079054.6632323-CDS-S-dermatodea_contig1037:21858..220001694079054.6632323-CDS-S-dermatodea_contig1037:21858..22000Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1037 21859..22000 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1037.275.1

>prot_S-dermatodea_contig1037.275.1 ID=prot_S-dermatodea_contig1037.275.1|Name=mRNA_S-dermatodea_contig1037.275.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=161bp
MAWAAGVAGTCVSISENSGGFPTAVFFFQSFLCLVAAILSLVLIEGRAYA
KVRDTEGNCFDASSCLGGACGSYDCVCWKPDGSEDCDVGTSQRVCLTFLG
DKDCDQIGDSEALLLASSVLHIIIIALAALAIFTSFATCCCCKFTVLLRN
ENGVTRIHRL*
back to top

mRNA from alignment at S-dermatodea_contig1037:16845..22037-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1037.275.1 ID=mRNA_S-dermatodea_contig1037.275.1|Name=mRNA_S-dermatodea_contig1037.275.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5193bp|location=Sequence derived from alignment at S-dermatodea_contig1037:16845..22037- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGATTGGCGGATAGTCGGCGGGTTTTGGGTAGGGTTCATGGCTTGGGCGG
CGGGAGTAGCCGGCACTTGCGTTTCCATTTCCGAGAACTCTGGAGGGTTC
CCCACGGCGGTGTTCTTTTTCCAGTCCTTTCTGTGCCTCGTGGCGGCCAT
CCTTTCGCTCGTGCTGATAGAGGGTAGAGGTGAGTGAAGCGACAGGTGTT
GACTGTGCCGTTAAATGTGTGCCAGCGGGGTTCGAGTCTGGCGAGGCGAC
GGTTTGAGTTGGTTGCCGCGGAGACCAACCACTCCTAGTTGATTGATTCA
TTGATTCATTCATTCATTCATTCATTCATTGAATTTGATTTACCATCACA
ATTACAACCGACCGCCCCACCAGCGGTTGCCGATTCCGCTCGTGGTCACA
TGAGAAATCGAGAGATCGAAAAACCCTACGGAATTACCCACATACTATTA
ATAGTAGGTAGTCACGGCTAGGCTAGGCTACGCCCGTGAGGTGTGCGCTG
GCAGGACAGTGTGTGGGTTTGGAGTCCACGGTGACTGTAGTATTATTAGT
ATTAATAGTATTAGTAGTATTAGTAGTATTAGTAGTATTAATAGTATTAA
CAGTATTATTAGTACCCACGGCAGGCGTTCACCCACGGAGGAAGCCGAGC
GCGCGGCGCGCTGCTGGCTGCCGGCTGCAGTGGGCCTCAAAATTGTGTAG
GACTTTAGTGTGAAAACAAAATTAATAAGACAGTACATACAAGGAAGGAA
TTGACGGAAGTTCTCGGAAACAGAGGGGACATACATACCTCGGAACACTT
GGGATTGCCTGCTAAACTTAATGACGTGATGAATACAGCAGTCAGGGTAA
AAGTGCCTGCACGGCTGTAGTATAGTAGTGAGTGTGCGAATAAACATGCT
CTAGAGACTTGACAGCTTAAAATACAGTGCGAGTAGGAAGTGTACCATGG
AGTCTCAAAGTATGTCTGCATACTTCACGCACATCATAGTACAGACAGTA
GTCTAGAGGTGGAGCACATACTAAAAAAAGAAAAAAGAAAAAAGTAGAAA
GAAAACGGCCCCCTCTCCTACTATTAATATTACAGGGAGGGCTCAGCACA
CCCGCGATGTCCTTATCAAGTCTAGCAACCGTTACGCAAAGAAGTCAGGA
TTTTTATTACGGGCGGCTGCACGTTGACCGGTAGGTTTTGCCTAGCGTTT
CAGCCTCAGAATACTGGTGCGTGCTACATGTAACCGTATAGCGGTCCATC
GAAGCTACCGTAAAAAAGCGCGATGTGGGCGTTGTCTTGACAGCCACGGT
TCCTAATTGTTCGACGCGACTAAGGCCCATTGCTGTGCCCCGTTTCTATC
GAACCCGAACATTTCGATTAATCGGAAAAGCTTTGGCGTTTAAGGACGTT
TCTAAGGCGCTCTGTCGCCTTTGTTTACAATGGGAACGCTGCTGGAATTG
TCAATTTCGCATTTTGCAGCACCCGCTCCGCATTTTGCGACATCCGTTTC
ACATAGTGATGAGACGGTTTGACCCGTTGCGACATGGAGAGCGCGGGCGT
GCAGGAGGCACATTGCCCTTACACGACCCCCAAGACCCCCAACGATGGCA
GCGCTAAACGGGTGGCCTTCGGTCTGTGATAAAAAAAACATTTCGCGCCA
CGCTTGGCCCAGCCCATGATGTGCCTCTGATATCCCGCTCTGATTTCCCT
CGAAAGAGGCTGCCGGAGCGTTGTTGGCCTCCATCCTTGGTGGACTCGGG
TACTGTCGGAGACTCGCAGCTTTACCGGAAGCCCGCCGTTGGTTCAACAC
GGTTTCGCGCGGGGCTATCAATCGACTAGACGGGCGTATGCGCACAGGAA
CCTTTGTGCGCGAGAGCCGGCGAGGGAGAGCAACATCGTGGGACTGCTCT
TGTTGAAGCGACTGTCACATTTTTATTTTCGGAATCGGAAGTCTATGTTT
TATCATATTTTCGAGCGCGACAGGAATGCCTCCCCTTCCCTGCTCGATAC
CGTGGCGGGCAGCCAGGGCTAGGAAGTGCCTATCCCATCCCCCTGTCGCT
ACTATTTCGCGAATGGTATTCATACGTACCCTTGGCCTCTCGCTTTTTCA
GTTGGTGTCGCAAAGAGCGTGTCTTGTTGTTGACAAGCCTTTTTTCCAAG
CCGCACACGTGCTTGGTTTCGAACGGTGTGAGCAAACACATAGTTTTGTG
GCAAGACTACATATACCCCGCCGCGCTGTCTTCCGTCTACCGTCTGCCAT
CTGCCCGAACTTGTTCGCAGCTTACGCGAAGGTGCGGGATACTGAGGGGA
ACTGCTTCGACGCCTCGTCCTGCTTGGGTGGCGCATGGTAAGCAGTGACG
AGAGTGCGTTGTCGGTTTAGGATTTACGTGCGGCATAATTGGCTTGATCT
CCGTCTAAAGTAGCCTCCCGATATTTCCTCGCGCGAAATACTCACGTGAA
CCGTGAACACAGAGTGGCGTATCGAGACAACCTCAACAGACCGTGAATAA
AAGGCAGTGATCTTCTTATGACAACGTACCGCCACTTGGCGCCGGTTGCT
GCGTATATGCTAGAGGCTCGTGTTCGTAGCCGCCCCCGACATAGATTACA
CGGAAGCCGAAAACGGACCAAATCGACGACTGTCCTTGAAGAGAGGAAGC
TGCACCTCGGACCGCCGTTTCGACAACATCGTGCTGGCGCAGGCAGCCGA
TGGCATGTCCGCAAAGACATTCACACGATGCGCGCGCAAGAGCGTAGCTT
TCAGCACGCGCCGCGGGGTTGTACCGTCGAAGCCTAACCGTGTGGCGCAC
GCGGAGGTTTTGTAGAGCCCGGCCTCAAAATACGCCCGTAGCAGTGTGTC
GGCTGCGCACTGCGTTTCGCGTGGTACGCATCGCGTTTCCTCTGAGCAGA
TTTGCTCGCATTTTGCGGCCGTGCAAGAGTTATTTATTATTATTCTTATT
TTTTTAAATTTTTTATTATCACACATACGACCGGCCCACCAATGGTTGCC
GGTCCCGCTCATGGTCAGATGAAAAAATCGGGAGATCGAGAAGAAACCCT
ACGGATTACCTACAGAGTACATACAAAGAAGGAATTGACATAAACTAACT
CTCGGAAACAGAGAGGGCATGCCTCGGGACTTGGGTCTGCTCAGAAGTAG
TGTGCGGTGGCGATGAGTGGGGTGACGGAAAGTACTGAAAATAGTGCATG
ACCCCAAACGCCACTTGCATCCATCGCTTTTCAAACCCCCCGTCCTGCAC
CGCCCTGCTCCGGGAAGTTCTTTTTTATTGGCTGCCAAGGCCGGGCGATG
GTTCTACCGCGGTGGTGGACGGAAGCGACAATTCTCGTCACCAATGTTCC
GCTTAATCCGCGCTGATCAAAATGAGTTAATGTGTCGCTCCCCTTTTCTC
AACGTGCCCCGCTGATAACGCGCGGCTTCTCTACGCATGCATGCATCTGC
GCGCGTGTGTCTGTGTGTGTGCAGTGGCTCTTACGATTGCGTCTGCTGGA
AACCGGATGGATCGGAAGATTGTGACGTGGGAACGTCGCAGCGGGTTTGC
TTGACTTTCTTGGGGGACAAAGATTGCGACCAAATAGGGGTGAGCCCAAC
TGGGACAGTTTTGACATAAGCGCGTCTAGATACGGTGTTGTTGTTTGCTT
GTAGTAAGGCAAATCACCCGCCGCTGCGTGGCATGAAGCAAAAGGGAAAG
CAAGGTAGAATACTTTTTACAGTAGTGGCAAACCTGTCCACGGAATTTCG
GTCGACGTCTCGAGTCGTTCGATGATAGCGGGGGGGAGGTGGTTGATTGT
AATGTGACACGATACTTGTAGCATCGTACATAATGACGAAAATCTCGCAA
GCAAAAACGACCCATTCCTAGAGTTACCTCTTGATTGTAATATGACACGA
TAGCATCGTATCGTATATAATGTAGGCTTCCACTGAGTTAAATTGGGCCA
TATTTTTCCTCTACCAACAATATTGGACCCCAATGCTAGTTAGTTCTGTG
TTCATAAATATTGACTGTCTTCAGGGAGGGGGGTGGTCTCGTCAGGCTTA
GGAAATTAACTCTCTAGAGCGGGACCAATGATTTAAACGCCTCCTTCTTA
CCCTGTAGTGCCCATATATGTTTCCGGAATTATGCTCGGTACTAGAGGGG
ATGAGATACAAGCATCGGGAGATGATACTTTCTAAGGAACAAGTCCATTC
TCCCCCCCCCCCCCCGCCCCCCCTTTTTAGTTGAACGACTCGTCAAGAAC
GATTGACCCCATGTTCCTCTGCCCCCACCCCCCCCTCTCCCCCTTCCCCT
TCCCCGCCCCCGCTCCAATCACATCGACAGGACTCGGAAGCTCTCTTGCT
CGCTTCGTCAGTCCTCCATATAATAATCATTGCCCTAGCAGCTTTGGCGA
TCTTCACTTCCTTCGCTACTTGCTGCTGCTGCAAGTTTACGGTACTCTTG
AGAAACGAGAACGGCGTGACACGGATCCACCGGTTATGATTGGGCGCCTG
TTATGATTGGACGACGCCTGGGGTGCTTGATCGCGCGCCGGATTGAGCTT
GCATGTGTGCGTGCCACTTTTCTTAAGTAGGCCGATTAGGTTTGTATAAA
ATTTTGTAAATTCCAAGCAACCGTTTGTATTGATCTGTACTGAGAGCAGA
CAAAGTTCCGCGAAGAGCTACGAGTGTGCTTAATGGGGGGATACCATTGC
GTAGCTCACGCTGTCCACAGCGCGTTACGTTACCCGCAAACCCTTTGTAT
ATAGGTCTGTGTATACAGCAGATAATTCTCCGTAGGAAGCAGCCCGCTTC
CTGCGGGAAGGAATACCATGGGATAGCCTGTTCACAGCGGTATTTACGTG
TACATGAGTATATAGCGTGCAGGAAAAAAGCCCCAACGTATCAATTCACA
TCCATATTTAGAGCACGCAAGCGCTGTCATCAGGCAATTGAAGGGGAAGG
AGGAGAAGAGTAAATGGTTCCATTAGTTTATTATTGTGTGTGTATGTTCC
AGTTGTGGAGCCTATTCGTGGCCGCTTCTCCTTTGAGGGAAGCTAGGCGT
GAAGTGCACAATCGAAACCCGGTAAAATTTTTGGTTTGGCCCCACAGTAG
TTTCAGGGAGGCCACGGGACCACACGCTTTGTAAGTTGGAATAAATTGTC
ATGGTTGGAGTTGTTGCATTTCGTGTCACCTTCGTGATATTGA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig1037:16845..22037-

>mRNA_S-dermatodea_contig1037.275.1 ID=mRNA_S-dermatodea_contig1037.275.1|Name=mRNA_S-dermatodea_contig1037.275.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=966bp|location=Sequence derived from alignment at S-dermatodea_contig1037:16845..22037- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCTTGGGCGGCGGGAGTAGCCGGCACTTGCGTTTCCATTTCCGAGAA
CTCTGGAGGGTTCCCCACGGCGGTGTTCTTTTTCCAGTCCTTTCTGTGCC
TCGTGGCGGCCATCCTTTCGCTCGTGCTGATAGAGGGTAGAGATGGCTTG
GGCGGCGGGAGTAGCCGGCACTTGCGTTTCCATTTCCGAGAACTCTGGAG
GGTTCCCCACGGCGGTGTTCTTTTTCCAGTCCTTTCTGTGCCTCGTGGCG
GCCATCCTTTCGCTCGTGCTGATAGAGGGTAGAGCTTACGCGAAGGTGCG
GGATACTGAGGGGAACTGCTTCGACGCCTCGTCCTGCTTGGGTGGCGCAT
GCTTACGCGAAGGTGCGGGATACTGAGGGGAACTGCTTCGACGCCTCGTC
CTGCTTGGGTGGCGCATGTGGCTCTTACGATTGCGTCTGCTGGAAACCGG
ATGGATCGGAAGATTGTGACGTGGGAACGTCGCAGCGGGTTTGCTTGACT
TTCTTGGGGGACAAAGATTGCGACCAAATAGGGTGGCTCTTACGATTGCG
TCTGCTGGAAACCGGATGGATCGGAAGATTGTGACGTGGGAACGTCGCAG
CGGGTTTGCTTGACTTTCTTGGGGGACAAAGATTGCGACCAAATAGGGGA
CTCGGAAGCTCTCTTGCTCGCTTCGTCAGTCCTCCATATAATAATCATTG
CCCTAGCAGCTTTGGCGATCTTCACTTCCTTCGCTACTTGCTGCTGCTGC
AAGTTTACGGTACTCTTGAGAAACGAGAACGGCGTGACACGGATCCACCG
GTTATGAGACTCGGAAGCTCTCTTGCTCGCTTCGTCAGTCCTCCATATAA
TAATCATTGCCCTAGCAGCTTTGGCGATCTTCACTTCCTTCGCTACTTGC
TGCTGCTGCAAGTTTACGGTACTCTTGAGAAACGAGAACGGCGTGACACG
GATCCACCGGTTATGA
back to top