mRNA_S-dermatodea_contig1037.274.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1037.274.1
Unique NamemRNA_S-dermatodea_contig1037.274.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig1037.274.1 vs. uniprot
Match: A0A835Z8S7_9STRA (Integral membrane protein DUF92-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8S7_9STRA)

HSP 1 Score: 303 bits (775), Expect = 5.320e-96
Identity = 160/232 (68.97%), Postives = 187/232 (80.60%), Query Frame = 1 
Query:   73 ALVVNTVGFGLLEATRKRGSILTPAGAANAWLLGLMLWSTLGGWGWGTCVLYLVAGSAVTKLKMGKKESMGIAEGRGGARGPENVWGSAATGAICALASMYWSQWAGVLRIGYVASLATKLSDTFASEVGKAYGKRTFLITTFKPVPPGTEGAVSLEGTLAGVVGSAILAGFAAVAGVISPKAVPACLVAAFVATNVESVLGATSQGKHAWLTNEVINFINTIVGAAVGVAL 768
            AL +N+VGFGL   + K   +LTP GAA+A++LG +LW  LG  GW TCVLYL+AGSAVTK+KM +K + GIAEGRGG RGPENVWGSAATGA CALA + W Q A +LR+GY ASLATKL DTFASE+GKAYG+ T+LITT +PVP GTEGAVSLEGT AGV GS I+A +AA  G++   A+  C VAAFVA NVESVLGAT+QGK AWLTNEVINF+NT VGAAVG+AL
Sbjct:    3 ALTINSVGFGLFIGSGKAEKLLTPQGAAHAYVLGNILWYALGWRGWTTCVLYLLAGSAVTKVKMAEKTARGIAEGRGGRRGPENVWGSAATGAACALACVVWPQRAALLRVGYAASLATKLGDTFASEIGKAYGRTTYLITTLRPVPAGTEGAVSLEGTAAGVGGSLIIAWYAAAIGLMPASAIGVCAVAAFVACNVESVLGATTQGKTAWLTNEVINFVNTTVGAAVGMAL 234
[Close]
BLAST of mRNA_S-dermatodea_contig1037.274.1 vs. uniprot
Match: A0A7S3ALU7_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ALU7_9EUKA)

HSP 1 Score: 280 bits (715), Expect = 1.610e-86
Identity = 156/248 (62.90%), Postives = 193/248 (77.82%), Query Frame = 1 
Query:   52 LPPQIQTALVVNTVGFGLLEATRKRGS-ILTPAGAANAWLLGLMLWSTLGGWGWGTCVLYLVAGSAVTKLKMGKKESMGIAEGRGGARGPENVWGSAATGAICALASMYWSQWAGVLRIGYVASLATKLSDTFASEVGKAYGKRTFLITTFKPVPPGTEGAVSLEGTLAGVVGSAILAGFAAVAGVISP--KAVPA---CLVAAFVATNVESVLGATSQGKHAWLTNEVINFINTIVGAAVGVALGFA 777
            L P++ TA+ +N+   GL      +G  +LTP+G A+AW LG+MLW +LG  GW TCVLYLV GS VTK++M +KE++GIAEGRGG RGPENVWGSAAT A CALAS  W   A V RIG+VASLATKLSDT ASE+GKA+G+ T+LITTFK VP GTEGAVSLEGT+AGVVGS +L  + A+ G++    +A+PA   C++AAFVATNVESV+GA +Q K AWLTNEV+NF+ T+VGAAVG+  GFA
Sbjct:   31 LSPRVLTAVGLNS---GLAAVGVAKGQKVLTPSGLAHAWALGVMLWGSLGVVGWSTCVLYLVCGSRVTKVRMVEKEALGIAEGRGGMRGPENVWGSAATAAACALASAAWPSRAAVFRIGFVASLATKLSDTCASEIGKAFGQTTYLITTFKLVPAGTEGAVSLEGTVAGVVGSIVLTAYGALVGLLGGQGRALPAAVACVLAAFVATNVESVIGAVAQDKFAWLTNEVVNFVMTVVGAAVGI--GFA 273
[Close]
BLAST of mRNA_S-dermatodea_contig1037.274.1 vs. uniprot
Match: L1JQB2_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JQB2_GUITC)

HSP 1 Score: 278 bits (710), Expect = 3.400e-86
Identity = 148/232 (63.79%), Postives = 181/232 (78.02%), Query Frame = 1 
Query:   73 ALVVNTVGFGLLEATRKRGSILTPAGAANAWLLGLMLWSTLGGWGWGTCVLYLVAGSAVTKLKMGKKESMGIAEGRGGARGPENVWGSAATGAICALASMYWSQWAGVLRIGYVASLATKLSDTFASEVGKAYGKRTFLITTFKPVPPGTEGAVSLEGTLAGVVGSAILAGFAAVAGVISPKAVPACLVAAFVATNVESVLGATSQGKHAWLTNEVINFINTIVGAAVGVAL 768
            +LV+N+V   LL AT K  S LT +G  +AWLLG++LW +LG  GW TCV+YL+AGS VTK+KM +KE  GIAE RGGARGPENVWGSAAT A CA+ + Y  Q  G+ RIG+VASLATKLSDTFASE+GKAYGK+TFLIT+ KPVP GTEGAVS+EGTLAGVVGS ++A +A +  V+    +P  ++AAFVAT  ESV+GAT Q K+ WLTNE +N INT +GAAVG+ L
Sbjct:   11 SLVLNSVLALLLLATGKYRSFLTSSGLLSAWLLGVILWGSLGFAGWSTCVVYLIAGSLVTKVKMAEKEKKGIAESRGGARGPENVWGSAATAAFCAMMATYSLQDTGLFRIGFVASLATKLSDTFASELGKAYGKKTFLITSMKPVPAGTEGAVSVEGTLAGVVGSLVIAVWAVMTNVMLASEIPVVMIAAFVATTCESVIGATVQDKYKWLTNEAVNAINTSIGAAVGILL 242
[Close]
BLAST of mRNA_S-dermatodea_contig1037.274.1 vs. uniprot
Match: A0A7S2GNY6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GNY6_9STRA)

HSP 1 Score: 276 bits (707), Expect = 3.820e-85
Identity = 147/246 (59.76%), Postives = 191/246 (77.64%), Query Frame = 1 
Query:   34 LPLVQGLPPQIQTALVVNTVGFGLL-EATRKRGSILTPAGAANAWLLGLMLWSTLGGWGWGTCVLYLVAGSAVTKLKMGKKESMGIAEGRGGARGPENVWGSAATGAICALASMYWSQWAGVLRIGYVASLATKLSDTFASEVGKAYGKRTFLITTFKPVPPGTEGAVSLEGTLAGVVGSAILAGFAAVAGVISPKAVPACLVAAFVATNVESVLGATSQGKHAWLTNEVINFINTIVGAAVGVAL 768
            LP+   L  +   A+ +NT G  ++  AT ++  +LTP+G  +AW LG++LWS LG  GW  CV YLV GS VTK+K+ +K  +GIAEGRGG+RGPENVWGSAATGA+CA A + W Q+  +L++GYV+S+ATKLSDTFASE+GKAYGKR FLITT KPVP GTEGAVSLEGTLAGVVGS I+A + A  G++S +++   ++AAFVAT  ES++GAT+QGK   LTNEV+NFINT++GA VG++L
Sbjct:   40 LPVADLLLSEPGKAVALNT-GLAIMGSATGQK--MLTPSGLLHAWALGIILWSALGWQGWSLCVFYLVMGSVVTKVKIEEKSKLGIAEGRGGSRGPENVWGSAATGALCAAAMLKWPQYRSLLQVGYVSSIATKLSDTFASEIGKAYGKRCFLITTLKPVPRGTEGAVSLEGTLAGVVGSLIIAIYGAAVGLVSWQSITVTMIAAFVATTAESLIGATAQGKFKILTNEVVNFINTLIGAFVGISL 282
[Close]
BLAST of mRNA_S-dermatodea_contig1037.274.1 vs. uniprot
Match: D7G5U0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U0_ECTSI)

HSP 1 Score: 270 bits (689), Expect = 3.360e-84
Identity = 146/185 (78.92%), Postives = 158/185 (85.41%), Query Frame = 1 
Query:  232 VAGSAVTKLKMGKKESMGIAEGRGGARGPENVWGSAATGAICALASMYWSQWAGVLRIGYVASLATKLSDTFASEVGKAYGKRTFLITTFKPVPPGTEGAVSLEGTLAGVVGSAILAGFAAVAGVISPKAVPACLVAAFVATNVESVLGATSQGKHAWLTNEVINFINTIVGAAVGVALGFASGV 786
            +AGSAVTKLKM KKES+GIAEGRGGARGPENVWGSAAT               G LRIGYVASLATKLSDTFASEVGKAYGK TFLITTFKPVPPGTEGAVSLEGTLAGVVGS I++GFAA AGV++ KA+PACL+AAFVATN ESVLGAT+QGK  WLTNEV+NF+NT+VGAAVGV LG A GV
Sbjct:    1 MAGSAVTKLKMEKKESLGIAEGRGGARGPENVWGSAAT---------------GPLRIGYVASLATKLSDTFASEVGKAYGKHTFLITTFKPVPPGTEGAVSLEGTLAGVVGSVIISGFAATAGVVTAKALPACLIAAFVATNFESVLGATTQGKVPWLTNEVVNFVNTVVGAAVGVGLGLACGV 170
[Close]
BLAST of mRNA_S-dermatodea_contig1037.274.1 vs. uniprot
Match: A0A7S4FD08_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4FD08_CHRCT)

HSP 1 Score: 274 bits (700), Expect = 2.430e-83
Identity = 148/240 (61.67%), Postives = 177/240 (73.75%), Query Frame = 1 
Query:   55 PPQIQTALVVNTV-GFGLLEATRKRGS-ILTPAGAANAWLLGLMLWSTLGGWGWGTCVLYLVAGSAVTKLKMGKKESMGIAEGRGGARGPENVWGSAATGAICALASMYWSQWAGVLRIGYVASLATKLSDTFASEVGKAYGKRTFLITTFKPVPPGTEGAVSLEGTLAGVVGSAILAGFAAVAGVISPKAVPACLVAAFVATNVESVLGATSQGKHAWLTNEVINFINTIVGAAVGVAL 768
            PP I TA V   V   GL       G  +LTP+G  +AW+LG+ LWSTLG  GW TCV YLV GSAVTKLKM +KE+ GIAE RGGARGPENVWGSAAT A+CA+ ++Y       L +GY ASLATKL+DT ASEVGKAYGK T+LITT KPVPPGTEGAVSLEG  AGVVGS +LA FA   G+    A+  C++AAF+A NVES++GA+ QG+  W+TNEV+NFINT+VGA V + +
Sbjct:  101 PPSIATAAVQAIVLNSGLAAIGTALGQRVLTPSGLVSAWVLGVTLWSTLGWQGWATCVFYLVCGSAVTKLKMAEKEAKGIAESRGGARGPENVWGSAATAALCAIGTVYMPLATTPLLVGYTASLATKLADTSASEVGKAYGKSTYLITTLKPVPPGTEGAVSLEGLAAGVVGSIVLAAFAIAIGLNHASALVPCIIAAFIANNVESLIGASVQGRIPWMTNEVVNFINTLVGAVVAILI 340
[Close]
BLAST of mRNA_S-dermatodea_contig1037.274.1 vs. uniprot
Match: A0A7S0QBY2_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0QBY2_9EUKA)

HSP 1 Score: 267 bits (683), Expect = 1.280e-81
Identity = 144/240 (60.00%), Postives = 180/240 (75.00%), Query Frame = 1 
Query:   55 PPQIQTALVVNT--VGFGLLEATRKRGSILTPAGAANAWLLGLMLWSTLGGWGWGTCVLYLVAGSAVTKLKMGKKESMGIAEGRGGARGPENVWGSAATGAICALASMYWSQWAGVLRIGYVASLATKLSDTFASEVGKAYGKRTFLITTFKPVPPGTEGAVSLEGTLAGVVGSAILAGFAAVAGVISPKAVPACLVAAFVATNVESVLGATSQGKHAWLTNEVINFINTIVGAAVGVAL 768
            P     AL +N+     G L   R    +LTP+G A++W LG++LW+ LG  GW TCVLYLV GSAVTKL+  KKE++GIAEGRGGARGPENVWGSAAT A+CA+ S+Y    A + R+G+VASLATKL+DT ASEVGKAYGK T+LITT + VPPGTEGAVSLEGTLAG+ GS +LAG+    G++   A+  C++AAF+A NVES++GAT+Q    WLTNEV+NFINT VGA V + +
Sbjct:   46 PAAATQALALNSGLAVMGTLAGQR----MLTPSGLAHSWGLGVILWTALGVRGWSTCVLYLVCGSAVTKLRKAKKEALGIAEGRGGARGPENVWGSAATAALCAIGSLYAPSLAAIFRMGFVASLATKLADTCASEVGKAYGKTTYLITTLRKVPPGTEGAVSLEGTLAGIAGSIVLAGYGIGVGLVPLGALLPCVLAAFIANNVESLIGATAQDNVWWLTNEVVNFINTTVGALVAMLM 281
[Close]
BLAST of mRNA_S-dermatodea_contig1037.274.1 vs. uniprot
Match: A0A7S2RSZ3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RSZ3_9STRA)

HSP 1 Score: 265 bits (676), Expect = 4.270e-80
Identity = 143/246 (58.13%), Postives = 187/246 (76.02%), Query Frame = 1 
Query:   31 ALPLVQGLPPQIQTALVVNTVGFGLLEATRKRGSILTPAGAANAWLLGLMLWSTLGGWGWGTCVLYLVAGSAVTKLKMGKKESMGIAEGRGGARGPENVWGSAATGAICALASMYWSQWAGVLRIGYVASLATKLSDTFASEVGKAYGKRTFLITTFKPVPPGTEGAVSLEGTLAGVVGSAILAGFAAVAGVISPKAVPACLVAAFVATNVESVLGATSQGKHAWLTNEVINFINTIVGAAVGVAL 768
            A PLV  L P + TA+ +N+   GL  ATR+  S+LTP+G  +AW LG++LWS+LG  GW  CVLYL+AGS VTK++M +K+ +GI+EGRGG RGPENVWGSAATGA+CA+A++ W +   +L++ YV+S+ATKL+DTF SEVGKA+GKR FLITT KPVP GTEGA+S+EGTLAGVVGS ++A + A   ++    V     AAF AT  ES++GAT+QG+   LTNEV+NFINT++GAAV   L
Sbjct:   69 AAPLVPVLGP-VPTAVGLNSALAGLGVATRQ--SMLTPSGLLHAWALGVILWSSLGWQGWSLCVLYLLAGSKVTKIRMKEKQDLGISEGRGGRRGPENVWGSAATGALCAIAALRWPEARPLLQVAYVSSIATKLADTFQSEVGKAFGKRCFLITTLKPVPRGTEGAISVEGTLAGVVGSLLIAAYGAGVNLMPWSCVWVVAAAAFFATMAESLIGATAQGRFKLLTNEVVNFINTLIGAAVAAGL 311
[Close]
BLAST of mRNA_S-dermatodea_contig1037.274.1 vs. uniprot
Match: W7U4P9_9STRA (Integral membrane protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U4P9_9STRA)

HSP 1 Score: 263 bits (672), Expect = 4.650e-79
Identity = 151/255 (59.22%), Postives = 182/255 (71.37%), Query Frame = 1 
Query:   43 VQGLPPQIQTALVVNTVGFGLLEATRKRGSI-----LTPAGAANAWLLGLMLWSTLGGWGWGTCVLYLVAGSAVTKLKMGKKESMGIAEGRGGARGPENVWGSAATGAICALASMYWSQWAGVLRIGYVASLATKLSDTFASEVGKAYGKRTFLITTFKPVPPGTEGAVSLEGTLAGVVGSAILAGFAAVAGV----ISPKAVPACLVAAFVATNVESVLGATSQG-KHAWLTNEVINFINTIVGAAVGVALGFA 777
            V  L P++         GFGL  A    G       LT +G  +AW+LG+ LWSTLG  GW  CVLYL+ GS VTK+K  +KE++GIAE RGGARGPENVWGSAA G ICA A+++      VL  GYVASLATKLSDTFASE+GKAYGKRTFLIT  KPVPPGTEGA+SLEGTLAGVVGS I+A    +AGV    ++ KAVP  LVAAF+ATNVES+LGA+ Q  +H W TNE INF+NT++G+ +G+ +  A
Sbjct:   97 VVALIPELGAYSANFLTGFGLNSALALVGLAVKQRWLTSSGLLHAWILGIALWSTLGWRGWALCVLYLICGSLVTKVKQSEKEALGIAEKRGGARGPENVWGSAAAGTICATATIFLPAQLHVLLTGYVASLATKLSDTFASEIGKAYGKRTFLITNLKPVPPGTEGAISLEGTLAGVVGSIIIA----LAGVGMRFVAWKAVPVVLVAAFLATNVESLLGASLQNDRHPWATNEFINFLNTLIGSLLGIGMVLA 347
[Close]
BLAST of mRNA_S-dermatodea_contig1037.274.1 vs. uniprot
Match: A0A845X1W2_9CYAN (TIGR00297 family protein n=1 Tax=Spirulina sp. SIO3F2 TaxID=2607816 RepID=A0A845X1W2_9CYAN)

HSP 1 Score: 256 bits (655), Expect = 4.930e-78
Identity = 136/234 (58.12%), Postives = 172/234 (73.50%), Query Frame = 1 
Query:   73 ALVVNTVGFGLLEATRKRGSILTPAGAANAWLLGLMLWSTLGGWGWGTCVLYLVAGSAVTKLKMGKKESMGIAEGRGGARGPENVWGSAATGAICALASMYWSQWAGVLRIGYVASLATKLSDTFASEVGKAYGKRTFLITTFKPVPPGTEGAVSLEGTLAGVVGSAILAGFAAVAGVISPKAVPACLVAAFVATNVESVLGATSQGKHAWLTNEVINFINTIVGAAVGVALGF 774
            AL++NTV   +     K+  +LTP G  +AW+LG+++W TL   G+   + Y + GS+VTK+ M +KE+ GIAEGRGG RGPENVWGSA  G +CA+A++ W     +  +GYVAS +TKLSDT ASEVGKAYG+RTFLITT +PVP GTEGAVSLEGTLAG   SAI+A  A   G+I+P  V  C+VAAF+ATN ESV+GAT Q K  WLTNEV+N INT++GA V +ALGF
Sbjct:   12 ALLLNTVLVAIAFLLPKK--LLTPMGYLHAWVLGVLVWGTLQWQGYSVVMFYFLVGSSVTKIGMAQKEAAGIAEGRGGLRGPENVWGSALVGTLCAIATLIWPNLTPLFALGYVASFSTKLSDTTASEVGKAYGQRTFLITTLQPVPRGTEGAVSLEGTLAGAAASAIIAALAWAIGMITPWGVLWCIVAAFIATNFESVIGATVQEKFTWLTNEVVNIINTLIGAGVAIALGF 243
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1037.274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z8S7_9STRA5.320e-9668.97Integral membrane protein DUF92-domain-containing ... [more]
A0A7S3ALU7_9EUKA1.610e-8662.90Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
L1JQB2_GUITC3.400e-8663.79Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7S2GNY6_9STRA3.820e-8559.76Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
D7G5U0_ECTSI3.360e-8478.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4FD08_CHRCT2.430e-8361.67Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S0QBY2_9EUKA1.280e-8160.00Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S2RSZ3_9STRA4.270e-8058.13Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W7U4P9_9STRA4.650e-7959.22Integral membrane protein n=1 Tax=Nannochloropsis ... [more]
A0A845X1W2_9CYAN4.930e-7858.12TIGR00297 family protein n=1 Tax=Spirulina sp. SIO... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1037contigS-dermatodea_contig1037:8012..14432 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score271.9
Seed ortholog evalue2.4e-70
Seed eggNOG ortholog2880.D7G5U0
GOsGO:0005575,GO:0016020
EggNOG free text desc.Integral membrane protein DUF92
EggNOG OGs2QU2J@2759,COG1836@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons7
Model size1831
Cds size612
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924153.9973006-UTR-S-dermatodea_contig1037:8011..80741622924153.9973006-UTR-S-dermatodea_contig1037:8011..8074Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1037 8012..8074 +
1694079054.5337706-UTR-S-dermatodea_contig1037:8011..80741694079054.5337706-UTR-S-dermatodea_contig1037:8011..8074Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1037 8012..8074 +
1622924154.0058024-UTR-S-dermatodea_contig1037:9222..93361622924154.0058024-UTR-S-dermatodea_contig1037:9222..9336Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1037 9223..9336 +
1694079054.546281-UTR-S-dermatodea_contig1037:9222..93361694079054.546281-UTR-S-dermatodea_contig1037:9222..9336Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1037 9223..9336 +
1622924154.087442-UTR-S-dermatodea_contig1037:13390..144321622924154.087442-UTR-S-dermatodea_contig1037:13390..14432Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1037 13391..14432 +
1694079054.622712-UTR-S-dermatodea_contig1037:13390..144321694079054.622712-UTR-S-dermatodea_contig1037:13390..14432Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1037 13391..14432 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924154.0169616-CDS-S-dermatodea_contig1037:9336..94351622924154.0169616-CDS-S-dermatodea_contig1037:9336..9435Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1037 9337..9435 +
1694079054.5617392-CDS-S-dermatodea_contig1037:9336..94351694079054.5617392-CDS-S-dermatodea_contig1037:9336..9435Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1037 9337..9435 +
1622924154.0301049-CDS-S-dermatodea_contig1037:9916..99861622924154.0301049-CDS-S-dermatodea_contig1037:9916..9986Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1037 9917..9986 +
1694079054.5799837-CDS-S-dermatodea_contig1037:9916..99861694079054.5799837-CDS-S-dermatodea_contig1037:9916..9986Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1037 9917..9986 +
1622924154.0400052-CDS-S-dermatodea_contig1037:10334..104531622924154.0400052-CDS-S-dermatodea_contig1037:10334..10453Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1037 10335..10453 +
1694079054.5905833-CDS-S-dermatodea_contig1037:10334..104531694079054.5905833-CDS-S-dermatodea_contig1037:10334..10453Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1037 10335..10453 +
1622924154.0546653-CDS-S-dermatodea_contig1037:11542..116951622924154.0546653-CDS-S-dermatodea_contig1037:11542..11695Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1037 11543..11695 +
1694079054.6007166-CDS-S-dermatodea_contig1037:11542..116951694079054.6007166-CDS-S-dermatodea_contig1037:11542..11695Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1037 11543..11695 +
1622924154.065225-CDS-S-dermatodea_contig1037:12905..130041622924154.065225-CDS-S-dermatodea_contig1037:12905..13004Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1037 12906..13004 +
1694079054.6082814-CDS-S-dermatodea_contig1037:12905..130041694079054.6082814-CDS-S-dermatodea_contig1037:12905..13004Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1037 12906..13004 +
1622924154.0778663-CDS-S-dermatodea_contig1037:13318..133901622924154.0778663-CDS-S-dermatodea_contig1037:13318..13390Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1037 13319..13390 +
1694079054.6153574-CDS-S-dermatodea_contig1037:13318..133901694079054.6153574-CDS-S-dermatodea_contig1037:13318..13390Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1037 13319..13390 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1037.274.1prot_S-dermatodea_contig1037.274.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1037 9337..13390 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1037.274.1

>prot_S-dermatodea_contig1037.274.1 ID=prot_S-dermatodea_contig1037.274.1|Name=mRNA_S-dermatodea_contig1037.274.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=204bp
MLWSTLGGWGWGTCVLYLVAGSAVTKLKMGKKESMGIAEGRGGARGPENV
WGSAATGAICALASMYWSQWAGVLRIGYVASLATKLSDTFASEVGKAYGK
RTFLITTFKPVPPGTEGAVSLEGTLAGVVGSAILAGFAAVAGVISPKAVP
ACLVAAFVATNVESVLGATSQGKHAWLTNEVINFINTIVGAAVGVALGFA
SGV*
back to top

mRNA from alignment at S-dermatodea_contig1037:8012..14432+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1037.274.1 ID=mRNA_S-dermatodea_contig1037.274.1|Name=mRNA_S-dermatodea_contig1037.274.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6421bp|location=Sequence derived from alignment at S-dermatodea_contig1037:8012..14432+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCACGGGGGGTACCCTGGCGCAAGTGGCTGCTCTGCCTCTGGTGCAGGG
TCTCCCTCCGCAGGTGCGGGGCCGTTACATACAGTTCAATCGTCATCAAT
GAACGACGATGCTTGCTTGGTAAAATAGTCGCAGCTGCAACCTTATGGTA
TAAATACATCGCAACGTTTGATCATGTCCCACCGCACGCAAAATGACGAT
GTTGGTACGCTGAGACAACAGCTAGCTGTAGAAGCCCTCCTGCTGGTGCG
CCTCTCCCCGCCGCCCTTCTTACATGTAGTCTACCATCGTACACCAGTAG
TTTCTCTCTGTAGCACGCCGTTTTTTTTGCCCAGGGTGCATGATATAAAG
CACAAAAGCGATACAACTAAGTATGCAAGGGCCCTCCTCTGGTCAAGTAT
CATATCGGAAAAGAGAATTGAGGCCACCTCAAGTTTACACTTTTATCGGC
ATGTCTGCCAGCGGTTGAGGTTCTAGTTGAAGCTAGATGGCTTCGCGGTA
ACCTTCCAAAGGCGAAGGTCACGACGTTCAGAACGGTGCGATTGCTCCGA
AGAGCCCTCGAAGAAGGTTATTTGCTTACAAAAGGGTCTTCTTGTAGTAT
AATAGACCGAGAGATTCCACCCAGCGTTGCCGCAAAGGTCACTAGCGTAC
TATCATACAGTATCCTACCGTTGATGGGTTGGTACTTCAGTGTTCCGTCG
CTAAGGGCCTCGCATCACACAGCAGTAGAGGGTATTCGTTCGACTGCGAG
ACGAGCAGAGAGGCGGAACCTCCTGTGTACTGGTACATTTACTCTGGTTC
CGAGAGGTAGTGTCAATGCCTTCTTATTTTGTGCTATAATATATACGTAT
TAATAGGTAATTCCGTAGCGTTTTTTCTATCTCTCCAATTATCGTCTGGC
CACGACCGGGATCGACAACCACTGGTGAACCACTGGTGGGCCGGTCGGTT
GTAAGTGCGATAATAATAATAATAATAATAACAATAAATAGCTTAAGCAA
CCCCCCTCCGTGTACAGTATCTCGGACAACATAAACATATGTACACGACA
CCACCCCCGTCAAGATTTTACAGTATAAAAAGCACTATTGTAGAGCTCTA
GAGGTGAAGTCCCATAATATCACAGGATGTGCTACAACAGCTGTGTACAG
GGTGTAGACCTAAAAGTCGGCGGAACAGTAAATAAATACACCCTCCTTCC
GCCCCCTCCAGATACAAACGGCGCTAGTGGTCAACACGGTCGGGTTCGGC
CTTCTGGAAGCCACCAGAAAGCGGGGGTCCATTCTGACCCCGGCTGGGGC
TGCTAACGCGTGGCTCTTGGGGCTGATGCTGTGGTCGACCCTGGGGGGAT
GGGGGTGGGGAACGTGCGTTCTGTATCTCGTGGCGGGCTCGGCGGTTACA
AAGCTAAAGATGGGCAAGAAAGAGGTGGGGCATGTTGTGTGGGCGTACGA
TAGTGAAGCTGCTTTTCGTGGGAATCGGCAGGACACTTCAGCAGGAAGCC
TAAAAATGAGACCTGGCTTGATCAAAATCTTCGTATGTATCTCTGTATTT
GCGCGGGGGTTGTTTTTATGACTTACGATAACGCCATCTCCTGGAAGCCG
CGCACTACTCGAATAGACACCCTCGGCTTCGTACACAAAGAAAACCCCCG
CCAAACCACGGAGGCTGGGGCGGCGTATTGCTTAGTAAGCCCGTGGTTCT
CGTGCATAGCATACGCTTTCGCCGGAAAAGCGCTTGCCACAGTCCATCCA
GCGCGATCTCCCGCACGCGCGTGGCGGCACACCAACACAATGCGGAGCTG
TGCGTTCTCGTCCTTGCATCAAGAGACTCACCGTGCCTTTCCGTCTGCCG
ACGTCTCAACCCGGGCCTCCGCTGTGTTATCCCCGGTACCCGCCTGTTCG
GGCAGTCTATGGGTATCGCTGAGGGGAGAGGGGGAGCCAGAGGGCCGGAA
AACGTCTGGGGATCGGCCGCGACAGGTGCGAGCATATATGCCTCGCGTGA
GCCCTCGCTGCGGGCAAAAATTTGGAGCGTGAGGAGCGTACTGGCGCGAA
TCTACTTGCCTTGTCTCAAACGTTCCTGTTGTGGTTGAGGGATGCGCTGC
TGGTTGTGTTGGGCGTTCGTTGGTGATTCGTGTTTTGCCGCCGTCTGTGC
GGGACCTGTCCCGAGATTGCGACGTATGCGTGCCATATATGAGCATACAT
GCATGCTGCTCAATGCGTGCGACACAGCAATAATATCATTTTAAGTAGTA
GCGTTGGACGTAAACCCTACCCTCCGGTGCCTCCACTGCGGAAACCGTTC
CTCCTTGACACGTCGCTTCGCAGGGGCGATTTGCGCGTTGGCGTCAATGT
ATTGGTCGCAGTGGGCTGGGGTGCTGAGAATCGGATACGTGGCGTCGCTG
GCGACGAAGCTGTCTGACACGTTCGCCAGCGAGGTTGGCAAGGTGAGCGA
TCGTCGCACGCCGGGCCTGTGTGTTGTACAGCCTCTGCTCGCCGCAAGCG
TCAACATGGATTACGGCGATAAATAAGTGGATTATAGATTACGTATGGGG
TGGGCTACCTCGTATGGCGGTAACACAATGTGGAAGCCGAAGACCAGGGG
CGGGGGGCGGGGGAGGGGGCTGTGAAAATGTAGCGATCGTTTACGGGGTA
CAGCGCCCAAAAACACGCAGCTGGGAAAGGTCTCTGGCAGCTTCACTTTT
AGTTGACATTTCCAAACCACTTGCACACACCCAACAAGCATCCCTTCTCT
CGCGGGAAGAGCCGAGCCCCCCACTACCTTCTTTTTTTAGTTTGTTTCCG
TTCCTATGCCACAGCGTTTAGCTCGGAAGACGCAGCATTCTCAGTTGCAG
CGCTTTTTCGACGCCCTTACATGATCGACATAGGAGAGGTGCTTTTTTCT
CAGATTCGAGGAACAATTGTGCGCTACGATGGTGAACTCAGAGAACGTGT
GGCCGCATGCATACTTGTATTAATAGCGTGATGCGCTTTCCATGCCCGCT
CCGTGATCTCGCGGAACAGATGGAGTTTTTTCACCGCGGTAAAGCGCGAG
GCAGCCAAATTTCTCGATATGTCCCGACCACACGCAATGAATCGATTGGG
TACATTCATTTATGTGTTCGTTGACTGTAGTCGTTCTACCACGAGTACCT
GTTTTCTCTATGATAGTGTGGGAATGATGCGTTGAGGTATCCGACTCATA
GGTTGGTGTTTGTGCTGAGTTGAGCCGTTACGCCCCAAGGGTAACTTGGT
TGTGTGCGGTATTGCACCGCATACTTTTTATTTCATTGATTTGATTGATT
GACTTGATTGATTGATTATCACACGTACATACTGGCGAGGTCTTGCCCTA
AAGAATTTCACACCATATCTCTCCATCTCTTCCATCTTCCATACTCTATT
ATATCATCTACATTCACATCCTATTGAAGTCTACGGAATCGACGATCACA
CTCATTGGCGAACACCGATCACTCATCAACCGACCAACAAACCTAACCAA
ACACATCCCCTACGCCGACGTGGCAACACAGGCGTACGGCAAGCGAACCT
TCCTGATCACGACTTTCAAGCCCGTCCCACCTGGCACGGAGGGCGCGGTC
AGCTTGGAAGGAACCCTCGCCGGGGTAGTGGGGTCCGCAATTCTCGCGGG
TTTTGCAGCGGTGGCCGGAGTTATTTCCCCGAAGGTATGCTTACACCACA
AGATTTTGCGCGGGCGCTCTTTACTACAAGCGCGGGGGCGTTACCTCAAG
ACAACGACTCCTGTCCTGTATGATACCATAACCATATAACATCATACATG
CTACGACACCACAGCATCATATGTAACAACTGAGCCTCCATAGGTGTAAG
CTTGCTTGGACCATCTTCCCTCCTGAAAAGGTGGGACCCCAACGCTCACT
GTGTGTTTCTGAAACCTTTGTTTTTTAGGGGGTTGTTTGCGTCTCCTGTG
CATCGATGATCGCTGTGGGGTTTCGTTGTGCTTGGTCGGCGAGGCGTGTC
GATCGATCGGCCTGCGGGTGGTGTAGAGCGTATCGAGGTTGTCGTTCGAC
GAGCATGCGGGTTTGCTGGCATGCGCCGCAGCTACAGGTTATTCTCGGGT
GTCGAGAATATGGGTACTCCATCGTTGGGGCGTTTGCGGCCCCGGACCTA
CGCCTCGATTCTCGAGGAAAACGCACCGGTGCAGGGAAACACGCATGGCA
TGGGCGGAACCTCGGCCGCAGGGTTTGCTGGACGTTGTTGAGTCGAGTCG
CTAGATATGCCGCAGGAGTCGTGTGGAAAATTCGAGTGGATTGCGGTCGA
ATTTGTCTGCGCTGCCCACGTTGTTCATCCCTTCTGGGAAGCACGTCTCG
AAACCGCTGGTATCTGCTGGCTTTGATTCAGTAAAACGGCGGATGGAGCC
CAGGGCTGGGCACGTCATTTGGTATGCGTCGCTGACCTGTGTTGTGTGAT
TGATCAACGTTGGGGTACGGCACAACGGCGAGCGATCGAGGTGGACAACG
ACAACTGCTACTGTTTGTTGTCGCGGTTTTGCTCGGGAGGGTCTTTTCGA
TTTCTTCCCAGCTCTGCAGAGTTGGCCGGAATATATTGTTTGCTTCGGTA
GGTAGCACTGTGCGTCGTGGGGATCCTATTGATGCTAGCATGACCGCGGC
ATGACGTCGTCGTCCTTTCCTGAGGCATCACTGAGGGCTGAAGAACGCTG
TGAAGAACTTTCCTAACTTGAGCCAGCCTTGACAAGGCGGGTGGGTTGCT
CTTACTGCGATAGCGGCCGTAACGCGAGGAGCAAGACGGGAGTATGATAC
ACGGGAAAGAACGCTCTACTGTATTGTATTAATATTAATAGCATCTTCCG
TTTGTTTTTCTAAATTTTTATCGCCCTCTTGTGTCGCTTGGCAGGCGGTC
CCCGCTTGCCTGGTAGCGGCTTTCGTTGCCACGAACGTCGAGAGCGTCCT
GGGCGCAACTTCGCAGGGAAAACACGCCTGGCTTACGAATGAGGTGTGCT
GACATCGATGTCGTTTGGTTTTTGTCTTGGGTTTTTTTGCCTGTCCCAAT
GCTCTAGGTTGTTTCGTTTTTGCAGTGCTGACGTTCGTGGAGGAATCGCC
TCTCGGTTGGATATGCTCCAGGTCGTGTCGACAGCAGGTGTGTTGTGTCA
ATCGAGTTCGTGTTTTCTTTCAAGAGCTACAAGGCCTAACTGAAAACCAA
GAGAAGCAGCCCAGCAATTGGTTTGCTGCAGAATTCCTGCCTGTCTCTCT
CCCGCTGTTAACCGACTCTCATCGTAACTCTGTATCCAACGTAACCGTGG
CCTGCAGGTGATCAACTTCATCAACACGATCGTCGGCGCTGCTGTAGGCG
TCGCCCTTGGCTTTGCGTCCGGTGTATGAAGACACTTCACATTGTATTCC
GGAGAGAAACGCCTGGTTGCTCGTTGAACAACCGCCGCCAATAATTATGG
TGACTTTGCGAAACAGATTTTGCTCGATGGACCCGGAGCGTCTCCATCAT
CATGGCTTAGCAGGCTCAGCGGCTGCCATTCGCAGTACTATTAATATAAT
TACGGGGGGGCATAGTTAACAGGTCCAAATTTGCCACAAGTCTCAACCTG
GAAAAATTTAAACAGGCCGGAATTTTGAATTTTTTTAGTTGTTCTAGGTC
AAAGTTCTTGCGTACGGCCATATCTCGCGTCTTTTTTTGTTTTCATGAGA
TTTTTGTTGTTTCGGTTTTCATGGTCGGAACAGTTAGTTGGGTATTATGG
TCGTGATATTTCGTCCTGATTACTTGATTATAGTGTACCTCCGTAATACG
TGTATCTGTGGCGGTAGGAAGGAGCAGCGCCGTCGTTTGACGGTTTCACT
GCGTCGCGACGTTAATGCGCAGACTCGACCCCCCGGGAAGGATTTGTTGA
GCATCATGCTTGCGTGGTTGCCCCGCGCATCTACACGTAGTGCGTTGTCA
AGGGTATGACAGCTTTCTTTTACGAGATGGCGCGTGATGGCCGTTAGACC
CGCCGGCCGGCCCGTGCATGATGTCCGTGGATGGCGACACGGAGACCAGG
TTTGCGCCGAACCCAGAATCAGGGCGGGGTGTGCGACATTTTGTACATAT
GCGGTGACGGTAAAATATAATAATTGCGCGGCGCTTGACACCAAAGATGC
TCGGATTGAGCGCGCTGAACACATCGATGACCATTCCCAGGAAATACCAA
CGTCATCAGGAAACTGCCGCGATAGGAATGTGCGCACGCACAATTTTGGA
GTATCTTGAGCCCGTTGAACACGGTGCTTGGCATATTTTGTGACGCAAGG
GGGGCTTTGTATCGAAAAGGGCGCGCGCGCCTACTTCGCCCTACGGCATT
AACACCTTCAGCGCTTCTTCCAGGTTCATTGCACACGGGTGCTTCCTGCA
CGCACACGGATCCGTTGCCAC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig1037:8012..14432+

>mRNA_S-dermatodea_contig1037.274.1 ID=mRNA_S-dermatodea_contig1037.274.1|Name=mRNA_S-dermatodea_contig1037.274.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1224bp|location=Sequence derived from alignment at S-dermatodea_contig1037:8012..14432+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTGTGGTCGACCCTGGGGGGATGGGGGTGGGGAACGTGCGTTCTGTA
TCTCGTGGCGGGCTCGGCGGTTACAAAGCTAAAGATGGGCAAGAAAGAGA
TGCTGTGGTCGACCCTGGGGGGATGGGGGTGGGGAACGTGCGTTCTGTAT
CTCGTGGCGGGCTCGGCGGTTACAAAGCTAAAGATGGGCAAGAAAGAGTC
TATGGGTATCGCTGAGGGGAGAGGGGGAGCCAGAGGGCCGGAAAACGTCT
GGGGATCGGCCGCGACAGTCTATGGGTATCGCTGAGGGGAGAGGGGGAGC
CAGAGGGCCGGAAAACGTCTGGGGATCGGCCGCGACAGGGGCGATTTGCG
CGTTGGCGTCAATGTATTGGTCGCAGTGGGCTGGGGTGCTGAGAATCGGA
TACGTGGCGTCGCTGGCGACGAAGCTGTCTGACACGTTCGCCAGCGAGGT
TGGCAAGGGGCGATTTGCGCGTTGGCGTCAATGTATTGGTCGCAGTGGGC
TGGGGTGCTGAGAATCGGATACGTGGCGTCGCTGGCGACGAAGCTGTCTG
ACACGTTCGCCAGCGAGGTTGGCAAGGCGTACGGCAAGCGAACCTTCCTG
ATCACGACTTTCAAGCCCGTCCCACCTGGCACGGAGGGCGCGGTCAGCTT
GGAAGGAACCCTCGCCGGGGTAGTGGGGTCCGCAATTCTCGCGGGTTTTG
CAGCGGTGGCCGGAGTTATTTCCCCGAAGGCGTACGGCAAGCGAACCTTC
CTGATCACGACTTTCAAGCCCGTCCCACCTGGCACGGAGGGCGCGGTCAG
CTTGGAAGGAACCCTCGCCGGGGTAGTGGGGTCCGCAATTCTCGCGGGTT
TTGCAGCGGTGGCCGGAGTTATTTCCCCGAAGGCGGTCCCCGCTTGCCTG
GTAGCGGCTTTCGTTGCCACGAACGTCGAGAGCGTCCTGGGCGCAACTTC
GCAGGGAAAACACGCCTGGCTTACGAATGAGGCGGTCCCCGCTTGCCTGG
TAGCGGCTTTCGTTGCCACGAACGTCGAGAGCGTCCTGGGCGCAACTTCG
CAGGGAAAACACGCCTGGCTTACGAATGAGGTGATCAACTTCATCAACAC
GATCGTCGGCGCTGCTGTAGGCGTCGCCCTTGGCTTTGCGTCCGGTGTAT
GAGTGATCAACTTCATCAACACGATCGTCGGCGCTGCTGTAGGCGTCGCC
CTTGGCTTTGCGTCCGGTGTATGA
back to top