mRNA_S-dermatodea_contig1037.273.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1037.273.1
Unique NamemRNA_S-dermatodea_contig1037.273.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig1037.273.1 vs. uniprot
Match: D7G5T9_ECTSI (ABC transporter ATP-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5T9_ECTSI)

HSP 1 Score: 452 bits (1162), Expect = 1.540e-152
Identity = 262/322 (81.37%), Postives = 281/322 (87.27%), Query Frame = 1 
Query:    1 LSSQRADAFGFGVRPTANLAAWRSPTNAVNA---VGGAGGAARGMTMYSAFKKXXXXXXXXXXXXXXXXXXXXXXXXXXX----------PPSPSVDTSRKDYVYQMNRLTKSFGKGVSIRPVLKDVSLSFYPGAKIGVLGSNGSGKSTLMKIMAGLDDEFEGESRLSDWAKVGYLEQEPKLNDGDTVTSNIEAAVVPTRNLLKEYEQVSNDLSTEGADMDKLSKEMDRLQNAIEATNGWELDRVLERAMDALRCPDGDALVANLSGGERRRVALCKLLLRRPDLLLLDEPTNHLDAESVAWMEDFLKGFPGTVVAITHDRY 927
            LS++RADAFG G+RP  + A+  +P   +     VG +GG  RGM+MYSAFKK  XXXXXXXXXXXXXXXXX XXXX             PPSP+VDTSRKD+VYQMNRL+KSFGKG SIRPVLKDVSLSFYPGAKIGVLGSNGSGKSTLMKIMAG+D EF+GESRLSDWAKVGYLEQEPKL+DGDTV+SNIEAAVVPTR LLKEYEQVS ++S+EGADMDKLSKEMDRLQNAIEA NGWELDRVLERAMDALRCPDGDALV NLSGGERRRVALCKLLLRRPDLLLLDEPTNHLDAESVAWMEDFLK F GTVVAITHDRY
Sbjct:   23 LSARRADAFGLGLRPIPSAASSFNPGGTLPHTVDVGSSGGGGRGMSMYSAFKKGGXXXXXXXXXXXXXXXXXRXXXXKGAXXXXXXXDGGPPSPTVDTSRKDFVYQMNRLSKSFGKGTSIRPVLKDVSLSFYPGAKIGVLGSNGSGKSTLMKIMAGVDTEFQGESRLSDWAKVGYLEQEPKLDDGDTVSSNIEAAVVPTRTLLKEYEQVSAEMSSEGADMDKLSKEMDRLQNAIEAANGWELDRVLERAMDALRCPDGDALVDNLSGGERRRVALCKLLLRRPDLLLLDEPTNHLDAESVAWMEDFLKSFGGTVVAITHDRY 344
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BLAST of mRNA_S-dermatodea_contig1037.273.1 vs. uniprot
Match: A0A835Z1K8_9STRA (ABC transporter ATP-binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1K8_9STRA)

HSP 1 Score: 335 bits (860), Expect = 4.330e-108
Identity = 166/227 (73.13%), Postives = 192/227 (84.58%), Query Frame = 1 
Query:  247 VDTSRKDYVYQMNRLTKSFGKGVSIRPVLKDVSLSFYPGAKIGVLGSNGSGKSTLMKIMAGLDDEFEGESRLSDWAKVGYLEQEPKLNDGDTVTSNIEAAVVPTRNLLKEYEQVSNDLSTEGADMDKLSKEMDRLQNAIEATNGWELDRVLERAMDALRCPDGDALVANLSGGERRRVALCKLLLRRPDLLLLDEPTNHLDAESVAWMEDFLKGFPGTVVAITHDRY 927
            +DTSRKDY+YQM+RLTKS+G+G     VLK VSLSFYPGAKIGVLGSNGSGKSTLMK+MAG++ E+EGESR+SDWA VGYL QEP L+DG TV  N++AAV   + LL EY  VS ++S  GADM+KL+ +MD+LQ+ IEA NGWELDR++ERAMDALRCP  +A VA LSGGERRRVALCKLLL+ P LLLLDEPTNHLDAESVAW+EDFL  F GTVVAITHDRY
Sbjct:   36 LDTSRKDYIYQMSRLTKSYGRGDGASTVLKSVSLSFYPGAKIGVLGSNGSGKSTLMKVMAGVEKEYEGESRMSDWASVGYLPQEPVLDDGPTVGDNLDAAVADIKALLDEYNAVSMEMSEPGADMEKLADKMDKLQSQIEAKNGWELDRIVERAMDALRCPPVEAQVATLSGGERRRVALCKLLLKSPSLLLLDEPTNHLDAESVAWLEDFLGRFTGTVVAITHDRY 262
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BLAST of mRNA_S-dermatodea_contig1037.273.1 vs. uniprot
Match: W7U335_9STRA (Abc transporter atp-binding protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U335_9STRA)

HSP 1 Score: 314 bits (805), Expect = 3.570e-99
Identity = 156/230 (67.83%), Postives = 188/230 (81.74%), Query Frame = 1 
Query:  247 VDTSRKDYVYQMNRLTKSFGKGVSIRPVLKDVSLSFYPGAKIGVLGSNGSGKSTLMKIMAGLDDEFEGESRLSDWAKVGYLEQEPKLNDGDTVTSNIEAAVVPTRNLLKEYEQVSNDLSTEGA---DMDKLSKEMDRLQNAIEATNGWELDRVLERAMDALRCPDGDALVANLSGGERRRVALCKLLLRRPDLLLLDEPTNHLDAESVAWMEDFLKGFPGTVVAITHDRY 927
            +DT++++Y+YQM+R++K+FGKG   +PVLKD+SLSFYPG KIGVLG NG+GKSTL+KIMAG+DD+F GE+R + WAK+GYL QEP+L +G TV   +E AV  TR LLKEYE VS  L        + + L+  MD LQ+ IEA NGWELDR+LERAMDALRCP  +A+VANLSGGERRRVALC+LLL RPDLLLLDEPTNHLDAESVAW+EDFL  + GTVVAITHDRY
Sbjct:   97 IDTNKREYIYQMHRMSKTFGKGDGSKPVLKDISLSFYPGVKIGVLGGNGAGKSTLIKIMAGVDDDFNGEARPARWAKLGYLPQEPEL-EGPTVGDELEKAVAETRGLLKEYETVSASLGKPDLTSNEQETLNLRMDELQSEIEANNGWELDRMLERAMDALRCPPQEAIVANLSGGERRRVALCRLLLTRPDLLLLDEPTNHLDAESVAWLEDFLHDYKGTVVAITHDRY 325
[Close]
BLAST of mRNA_S-dermatodea_contig1037.273.1 vs. uniprot
Match: A0A6U4XVY4_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U4XVY4_HEMAN)

HSP 1 Score: 296 bits (759), Expect = 2.950e-92
Identity = 145/230 (63.04%), Postives = 186/230 (80.87%), Query Frame = 1 
Query:  247 VDTSRKDYVYQMNRLTKSFGKGVSIRPVLKDVSLSFYPGAKIGVLGSNGSGKSTLMKIMAGLDDEFEGESRLSDWAKVGYLEQEPKLNDGDTVTSNIEAAVVPTRNLLKEYEQVSNDLSTEGADMD---KLSKEMDRLQNAIEATNGWELDRVLERAMDALRCPDGDALVANLSGGERRRVALCKLLLRRPDLLLLDEPTNHLDAESVAWMEDFLKGFPGTVVAITHDRY 927
            +D  +++Y+YQM +L K+   G   + +L +++L+FYPGAKIGVLG+NG+GKSTLMKIMAG D++++GES  + WAK+GYLEQEPKL+D  TVT NIE AV  TR++L  YE++S DL+   AD +   KL  EM R+Q++IEA +GWEL+R LERA+DALRCP G+++V+NLSGGERRRVALCKLLL+RPDLLLLDEPTNHLDAESV W+E FL  + GT VAITHDRY
Sbjct:  107 LDLDKREYIYQMYKLQKTVSSG---KKILDNINLAFYPGAKIGVLGNNGAGKSTLMKIMAGTDNDYDGESAPAKWAKIGYLEQEPKLDDDKTVTQNIEIAVKDTRDMLSRYEEISKDLAKGDADAEQTEKLMNEMARVQDSIEAVDGWELERTLERALDALRCPPGESVVSNLSGGERRRVALCKLLLQRPDLLLLDEPTNHLDAESVLWLERFLAEYQGTCVAITHDRY 333
[Close]
BLAST of mRNA_S-dermatodea_contig1037.273.1 vs. uniprot
Match: A0A7S2YWS6_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7S2YWS6_9CHLO)

HSP 1 Score: 280 bits (717), Expect = 2.190e-89
Identity = 141/219 (64.38%), Postives = 171/219 (78.08%), Query Frame = 1 
Query:  271 VYQMNRLTKSFGKGVSIRPVLKDVSLSFYPGAKIGVLGSNGSGKSTLMKIMAGLDDEFEGESRLSDWAKVGYLEQEPKLNDGDTVTSNIEAAVVPTRNLLKEYEQVSNDLSTEGADMDKLSKEMDRLQNAIEATNGWELDRVLERAMDALRCPDGDALVANLSGGERRRVALCKLLLRRPDLLLLDEPTNHLDAESVAWMEDFLKGFPGTVVAITHDRY 927
            +    +L K+   G   + VLKDVSLS Y GAKIGVLGSNG+GKSTLM+IMAG+D EF+G+ +++D  K+GYL QEP L++G+TV  NIE A+   R ++KE+E+VS  +    ADMDKL   MD LQNA++A NGWE+DR LERAMDALRCP GDALV NLSGGERRRVA+C+LLL  PD+LLLDEPTNHLDA SVAW+E FL  F GTVVAITHDR+
Sbjct:   46 ILSFGKLKKTVSGG---KQVLKDVSLSMYLGAKIGVLGSNGAGKSTLMRIMAGVDKEFDGDYQVNDGIKIGYLAQEPPLDEGETVMENIEPALAEVRGMVKEFEEVSLAMGDPDADMDKLMNRMDELQNALDACNGWEVDRQLERAMDALRCPPGDALVENLSGGERRRVAICRLLLAAPDVLLLDEPTNHLDAASVAWLERFLAEFKGTVVAITHDRF 261
[Close]
BLAST of mRNA_S-dermatodea_contig1037.273.1 vs. uniprot
Match: A0A5J4Z0C3_PORPP (Probable ATP-dependent transporter ycf16 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z0C3_PORPP)

HSP 1 Score: 288 bits (737), Expect = 3.500e-89
Identity = 145/231 (62.77%), Postives = 181/231 (78.35%), Query Frame = 1 
Query:  244 SVDTSRKDYVYQMNRLTKSFGKGVSIRPVLKDVSLSFYPGAKIGVLGSNGSGKSTLMKIMAGLDDEFEGESRLSDWAKVGYLEQEPKLNDGDTVTSNIEAAVVPTRNLLKEYEQVS---NDLSTEGADMDKLSKEMDRLQNAIEATNGWELDRVLERAMDALRCPDGDALVANLSGGERRRVALCKLLLRRPDLLLLDEPTNHLDAESVAWMEDFLKGFPGTVVAITHDRY 927
            S+DTSRK++V+QM+R+ K+   G   + +L ++SLSF+PGAKIGVLGSNGSGKS+LMKIM G+D +F+G++      K+GYLEQEP+L DGDTV  NI+A V   RN LK +E+VS    D S    +++ L KEM RLQ+ IEA NGWELDR+L+RA DALRCP  DAL+  LSGGE+RRVALCKLLL +P++LLLDEPTNHLDA SVAW+E FL  FPGTVV+ITHDRY
Sbjct:   80 SIDTSRKEFVFQMHRVGKTLPTG---KQILNNISLSFFPGAKIGVLGSNGSGKSSLMKIMGGVDRDFDGDALPQRNLKIGYLEQEPELTDGDTVGENIDAGVAALRNTLKRFEEVSVKMGDASLPADELESLGKEMMRLQDEIEAQNGWELDRMLDRAKDALRCPPDDALINTLSGGEKRRVALCKLLLEKPEMLLLDEPTNHLDAGSVAWLEQFLGKFPGTVVSITHDRY 307
[Close]
BLAST of mRNA_S-dermatodea_contig1037.273.1 vs. uniprot
Match: L1IB49_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IB49_GUITC)

HSP 1 Score: 285 bits (729), Expect = 2.080e-88
Identity = 144/234 (61.54%), Postives = 183/234 (78.21%), Query Frame = 1 
Query:  247 VDTSRKDYVYQMNRLTKSFGKGVSIRPVLKDVSLSFYPGAKIGVLGSNGSGKSTLMKIMAGLDDEFEGESRLSDWAKVGYLEQEPKLNDGDTVTSNIEAAVVPTRNLLKEYEQVSNDLSTEGADMD---KLSKEMDRLQNAIEATNGWELDRVLERAMDALRCPDGDALVANLSGGERRRVALCKLLLRRPDLLLLDEPTNHLDAE----SVAWMEDFLKGFPGTVVAITHDRY 927
            +DT +++Y+YQM +L K    G   + VL+D++L+FYPGAKIGVLG+NG+GKSTLM+IM+G D+ +EG++  + WAK+GYLEQEPKL++  TV  NIE +V   R L+  Y ++S +L+ EG   D   KL  EM+R+QN IEA+NGWELDR+LERAMDALRCPD ++ V+ LSGGERRRVALCKLLL+RPDLLLLDEPTNHLDAE    SVAW+E FL  + GT VAITHDRY
Sbjct:   52 LDTDKREYIYQMYKLGKRLPSG---KQVLQDINLAFYPGAKIGVLGNNGAGKSTLMRIMSGQDENYEGDAAPARWAKIGYLEQEPKLSEDKTVIENIEESVKEIRELVARYGKISKELTDEGISDDAKEKLMNEMERVQNGIEASNGWELDRMLERAMDALRCPDPNSSVSVLSGGERRRVALCKLLLQRPDLLLLDEPTNHLDAEAKPHSVAWLEQFLGSYQGTCVAITHDRY 282
[Close]
BLAST of mRNA_S-dermatodea_contig1037.273.1 vs. uniprot
Match: A0A7S0QR77_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QR77_9CRYP)

HSP 1 Score: 284 bits (726), Expect = 9.620e-88
Identity = 140/230 (60.87%), Postives = 177/230 (76.96%), Query Frame = 1 
Query:  247 VDTSRKDYVYQMNRLTKSFGKGVSIRPVLKDVSLSFYPGAKIGVLGSNGSGKSTLMKIMAGLDDEFEGESRLSDWAKVGYLEQEPKLNDGDTVTSNIEAAVVPTRNLLKEYEQVSNDLSTEGAD---MDKLSKEMDRLQNAIEATNGWELDRVLERAMDALRCPDGDALVANLSGGERRRVALCKLLLRRPDLLLLDEPTNHLDAESVAWMEDFLKGFPGTVVAITHDRY 927
            +D  +++Y+YQM +L K    G   + +L++++LSFYPGAKIGVLG+NG+GKSTLM+IMAG+D  +EG++  + WAK+GYLEQEPKL +  TV  NIE AV  TR LL+ Y ++  +L+  G D    +KL  EM R+Q+ I+A NGWEL+R LERA DALRCP  DALV+ LSGGERRRVALC+LLL +PDLLLLDEPTNHLDAESVAW+E FL  +PGT V ITHDRY
Sbjct:   70 LDLDKREYIYQMYKLGKRLPNG---KDILQNINLSFYPGAKIGVLGNNGAGKSTLMRIMAGVDPNYEGDAAPARWAKIGYLEQEPKLLEDKTVRENIETAVAGTRQLLQRYSELGKELAGPGLDPAVSEKLMNEMSRVQDGIDAANGWELERTLERAQDALRCPPSDALVSVLSGGERRRVALCRLLLEKPDLLLLDEPTNHLDAESVAWLEHFLGTYPGTCVGITHDRY 296
[Close]
BLAST of mRNA_S-dermatodea_contig1037.273.1 vs. uniprot
Match: A0A830HGK2_9CHLO (Uncharacterized protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HGK2_9CHLO)

HSP 1 Score: 280 bits (717), Expect = 1.500e-86
Identity = 141/219 (64.38%), Postives = 171/219 (78.08%), Query Frame = 1 
Query:  271 VYQMNRLTKSFGKGVSIRPVLKDVSLSFYPGAKIGVLGSNGSGKSTLMKIMAGLDDEFEGESRLSDWAKVGYLEQEPKLNDGDTVTSNIEAAVVPTRNLLKEYEQVSNDLSTEGADMDKLSKEMDRLQNAIEATNGWELDRVLERAMDALRCPDGDALVANLSGGERRRVALCKLLLRRPDLLLLDEPTNHLDAESVAWMEDFLKGFPGTVVAITHDRY 927
            +    +L K+   G   + VLKDVSLS Y GAKIGVLGSNG+GKSTLM+IMAG+D EF+G+ +++D  K+GYL QEP L++G+TV  NIE A+   R ++KE+E+VS  +    ADMDKL   MD LQNA++A NGWE+DR LERAMDALRCP GDALV NLSGGERRRVA+C+LLL  PD+LLLDEPTNHLDA SVAW+E FL  F GTVVAITHDR+
Sbjct:   66 ILSFGKLKKTVSGG---KQVLKDVSLSMYLGAKIGVLGSNGAGKSTLMRIMAGVDKEFDGDYQVNDGIKIGYLAQEPPLDEGETVMENIEPALAEVRGMVKEFEEVSLAMGDPDADMDKLMNRMDELQNALDACNGWEVDRQLERAMDALRCPPGDALVENLSGGERRRVAICRLLLAAPDVLLLDEPTNHLDAASVAWLERFLAEFKGTVVAITHDRF 281
[Close]
BLAST of mRNA_S-dermatodea_contig1037.273.1 vs. uniprot
Match: A0A7S1EPY4_9RHOD (Probable ATP-dependent transporter ycf16 n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1EPY4_9RHOD)

HSP 1 Score: 278 bits (711), Expect = 3.290e-85
Identity = 137/231 (59.31%), Postives = 182/231 (78.79%), Query Frame = 1 
Query:  244 SVDTSRKDYVYQMNRLTKSFGKGVSIRPVLKDVSLSFYPGAKIGVLGSNGSGKSTLMKIMAGLDDEFEGESRLSDWAKVGYLEQEPKLNDGDTVTSNIEAAVVPTRNLLKEYEQVS---NDLSTEGADMDKLSKEMDRLQNAIEATNGWELDRVLERAMDALRCPDGDALVANLSGGERRRVALCKLLLRRPDLLLLDEPTNHLDAESVAWMEDFLKGFPGTVVAITHDRY 927
            ++DTSRK+Y++QM  ++K+   G     VL +++LSF+PGAKIGVLG NG+GKSTL++IMAG+D +++G++      ++GYLEQEP+LNDG+TV  N+EAAV   R+ LK +E++S   +D S    +  K  +E+ R+Q+ IEA +GWELDR+L+RA+DALRCP  +A VA LSGGERRRVALCKLLL+RPDLL+LDEPTNHLDAESVAW+E FL  F GTVVA+THDRY
Sbjct:   96 NIDTSRKEYIFQMQNVSKTLPNGTK---VLNNINLSFFPGAKIGVLGPNGAGKSTLIRIMAGVDKDYDGDALPQRGIRIGYLEQEPELNDGETVIENVEAAVQDIRDQLKLFEELSQKMSDSSLSTEEQQKYVQELGRVQDFIEARDGWELDRLLDRALDALRCPPNEAKVATLSGGERRRVALCKLLLKRPDLLILDEPTNHLDAESVAWLEQFLLTFTGTVVAVTHDRY 323
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1037.273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5T9_ECTSI1.540e-15281.37ABC transporter ATP-binding protein n=1 Tax=Ectoca... [more]
A0A835Z1K8_9STRA4.330e-10873.13ABC transporter ATP-binding protein n=1 Tax=Tribon... [more]
W7U335_9STRA3.570e-9967.83Abc transporter atp-binding protein n=2 Tax=Monodo... [more]
A0A6U4XVY4_HEMAN2.950e-9263.04Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A0A7S2YWS6_9CHLO2.190e-8964.38Hypothetical protein (Fragment) n=1 Tax=Pycnococcu... [more]
A0A5J4Z0C3_PORPP3.500e-8962.77Probable ATP-dependent transporter ycf16 n=1 Tax=P... [more]
L1IB49_GUITC2.080e-8861.54Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7S0QR77_9CRYP9.620e-8860.87Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A830HGK2_9CHLO1.500e-8664.38Uncharacterized protein n=1 Tax=Pycnococcus provas... [more]
A0A7S1EPY4_9RHOD3.290e-8559.31Probable ATP-dependent transporter ycf16 n=1 Tax=T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1037contigS-dermatodea_contig1037:215..5979 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score453.4
Seed ortholog evalue8.7e-125
Seed eggNOG ortholog2880.D7G5T9
EggNOG free text desc.ATPase activity
EggNOG OGsCOG0488@1,KOG0927@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionABC transporter ATP-binding protein
Ec32 orthologEc-12_009100.1
Exons6
Model size927
Cds size927
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1037.273.1prot_S-dermatodea_contig1037.273.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1037 215..5979 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924153.9096446-CDS-S-dermatodea_contig1037:214..3811622924153.9096446-CDS-S-dermatodea_contig1037:214..381Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1037 215..381 -
1694079054.457618-CDS-S-dermatodea_contig1037:214..3811694079054.457618-CDS-S-dermatodea_contig1037:214..381Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1037 215..381 -
1622924153.9226213-CDS-S-dermatodea_contig1037:1339..15141622924153.9226213-CDS-S-dermatodea_contig1037:1339..1514Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1037 1340..1514 -
1694079054.467464-CDS-S-dermatodea_contig1037:1339..15141694079054.467464-CDS-S-dermatodea_contig1037:1339..1514Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1037 1340..1514 -
1622924153.9321828-CDS-S-dermatodea_contig1037:2910..30181622924153.9321828-CDS-S-dermatodea_contig1037:2910..3018Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1037 2911..3018 -
1694079054.475693-CDS-S-dermatodea_contig1037:2910..30181694079054.475693-CDS-S-dermatodea_contig1037:2910..3018Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1037 2911..3018 -
1622924153.9414527-CDS-S-dermatodea_contig1037:4123..41831622924153.9414527-CDS-S-dermatodea_contig1037:4123..4183Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1037 4124..4183 -
1694079054.4841156-CDS-S-dermatodea_contig1037:4123..41831694079054.4841156-CDS-S-dermatodea_contig1037:4123..4183Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1037 4124..4183 -
1622924153.9489741-CDS-S-dermatodea_contig1037:5258..54111622924153.9489741-CDS-S-dermatodea_contig1037:5258..5411Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1037 5259..5411 -
1694079054.4952414-CDS-S-dermatodea_contig1037:5258..54111694079054.4952414-CDS-S-dermatodea_contig1037:5258..5411Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1037 5259..5411 -
1622924153.965518-CDS-S-dermatodea_contig1037:5715..59791622924153.965518-CDS-S-dermatodea_contig1037:5715..5979Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1037 5716..5979 -
1694079054.51721-CDS-S-dermatodea_contig1037:5715..59791694079054.51721-CDS-S-dermatodea_contig1037:5715..5979Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1037 5716..5979 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1037.273.1

>prot_S-dermatodea_contig1037.273.1 ID=prot_S-dermatodea_contig1037.273.1|Name=mRNA_S-dermatodea_contig1037.273.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=309bp
LSSQRADAFGFGVRPTANLAAWRSPTNAVNAVGGAGGAARGMTMYSAFKK
KGGGKKKGKAGGKKPPSGGGKGGGDGGPPSPSVDTSRKDYVYQMNRLTKS
FGKGVSIRPVLKDVSLSFYPGAKIGVLGSNGSGKSTLMKIMAGLDDEFEG
ESRLSDWAKVGYLEQEPKLNDGDTVTSNIEAAVVPTRNLLKEYEQVSNDL
STEGADMDKLSKEMDRLQNAIEATNGWELDRVLERAMDALRCPDGDALVA
NLSGGERRRVALCKLLLRRPDLLLLDEPTNHLDAESVAWMEDFLKGFPGT
VVAITHDRY
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mRNA from alignment at S-dermatodea_contig1037:215..5979-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1037.273.1 ID=mRNA_S-dermatodea_contig1037.273.1|Name=mRNA_S-dermatodea_contig1037.273.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5765bp|location=Sequence derived from alignment at S-dermatodea_contig1037:215..5979- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTCTCCTCGCAACGAGCCGATGCGTTCGGGTTCGGCGTGAGACCCACCGC
CAACCTTGCCGCATGGCGCTCCCCAACCAATGCCGTAAACGCCGTCGGCG
GCGCGGGCGGCGCGGCTCGCGGGATGACCATGTACTCGGCGTTCAAGAAG
AAGGGCGGGGGGAAGAAGAAAGGAAAGGCAGGCGGCAAAAAGCCTCCGAG
CGGCGGCGGGAAGGGCGGGGGGGATGGGGGGCCTCCTTCTCCTTCCGTTG
ACACTTCGAGGAAGGTCGGTGTTTGGCGCGCGCACGCTTGGCGGAAGCGG
GGGCTGGAGGGGGAGGGGGGCGGGGGGCGGGGGGCGGGGTGGCATTAGGC
GGTGGAAGGGGGCGGGGCTTGCGTTTATTGTGCGGGCGCGTGCAATAATA
TTTTCTGCAGAATTGTACGGGAGGAGTGAGCACACCTCACGCGGGGATAA
AATCCTCCAAGTCCATCCCCTCTCTGCACAATTAGAATCCGCGCACTCTC
TTCATTACGCCGTCATCTCGCACCGCTATTGCTGCCGTCGTACTTTATCT
AATGCTGCCGGGTGACAGGATTACGTGTACCAGATGAACCGACTGACCAA
GTCATTCGGCAAGGGGGTTAGCATCCGCCCTGTGCTCAAGGACGTAAGCC
TGTCCTTTTACCCCGGGGCAAAGATCGGCGTCCTGGGATCCAACGGCTCG
GGAAAGTCCACCCTCATGAAGGTACGGGGTGCTGGATGTAACCGCCCGAC
ACCGCTGCGAGGTTGGCGTGTAGAATACTGTGGACGCTCTTTGCAGCCTC
GGGCTGAAGAGGCTGAAGTCTGTTCGCGCGAGCGTGAGCTTGATCTGCTC
GCGACGAACCGAATGTAGATTGGTCGCAGACAGGTGTGCCGTCATCGGCG
AGCGTCCGAGCAATGGGCGGCAATAGCACGAACGGTCTCTTCTTGTTATT
CTCGCGAAGACCAGCCGTAGTGCTATCTTACAGGCGATGGGTGTATTTTG
TGAAAATTGCTGATTTGCGGTGTTGCTATTAATAGAGCGCGTGTACGGGT
AGTGTTGTAAATCGCCGTAACCGCGAGCACGACTGGGGCGGGGAGTAGCG
TCAAGCCTCGAAATACGATTTGTTAGTTTGCACAAGCGCCTTCCTTCCTT
CTCCCTTCGGGAAGCCAGCCGAACCGACACTGCCTGTGGGGGATTTATTA
TTTCTGTTTTTTTTCTTTTTCTCGCATGTAACCGATCGGCCCTAATCTGA
CTTTACGTCTGTGGTGACACGAGGGATGACCCCGTCTCTCCCCGGTACTT
GCACTTGCACACGCGTTTGGTTTTTATCGCGAATGCATTGGGTTTAGCAC
TCCCGCAGCTCGCCGAACTCTCGGAATTTGCTTACTTACGGTCTCGATAG
CGCTTTCCGCGGCGGACATTTGTTTTCTTATTTTCTGTTGCAGGTATTGA
ATTGAACCCATGATGTCTCTCTTACCGGAACCTTGGTGCCACGAGTTCAA
CCACTGGACGATACACCCTTGTATATCGATCCCAGCGAAGCCCACGCGCG
CGCTAGGGCTGCACCCTCGCTCGGCAAATCCCTGGTGGCACATGCGATAA
GCGAGCATAGTCGAGGGCGCACGTTGGCCGCCCGTCGGCGATTGACAGCT
ATCGACCAGCCGCGAATGCAGGTTGCTATTGAGAGCATCGTTCAGTGCCA
TACCCACCGCCTGCTCAACCCCTCCGACCTTTCTCGTACGTGCCTGTGTT
CGTGTGCGTGTTTTTTTCTATCTTTATATGTGTTCCGATTATGCAGATCA
TGGCGGGCCTAGACGACGAATTCGAGGGGGAGTCCCGACTGAGCGACTGG
GCTAAAGTGAGTCTAGTCCGTAGATGTAGCGGTACGTGGAGTAGGCGTGG
AGTGGTCCGCCCTAACGCTGTGTCTTGGTATTCACAGTGCCGCGACTCAC
ACGATGTTGTGCGCTGCTTTTAGTAACTGTGGTGCGACAAGGCCCTGAAT
TCCCGAGTGGAACGCACCGAGCGGGATATTCTGAAATAGGTAGGGTTGTG
AGTCGGCTCCGACTATAGTCCGACTGACCCACTTATTGTATAGTCAGTCA
GTCGGCTGCGGGGCATGCCGACTAGTTGGCCTTTGGGTTTCATAGGTCCT
GGTATGGCGTTTTTTTTCACGCGGCAGCATATAGCCGGCGGCGCCGGCTC
GCTGCGCTCGCCCGACCATGGCCAACTAATCGGCGTAGCCGATAGTTGGC
AATAGTCGGATAGTCGACTGCCTTCGCCAGCCGATTAGTTGCTACGCCAG
CCGACTCACAACCCTAGGAATATGGCATTATCGAGGAGGACTTGCGGCTA
TTGGGTGGAGGCCGCTCCTCGGTGTTTTGCGCTTTCTTCGAGTCTTGTGG
CACCTGATGGGCTGCATAAAGCAGCTATAATAGTTCAATGGTATGGGGAG
ATGGAAGCACGCGCTGCGGTAAGTGCTTGCTGCCACAAGTTGTTTCATCC
CATGCTACCTGACGACAGGAGAAGTTTAATCTTGGGGCACAAACTTAATG
GTCTGGGGACCAGGGACCGGTTTTTAAATGGACGATCCCTGGGTGTTCCC
TTGACCCCTACCCAGAGAATAGCCATGATTGAAATCGAAAACCGTCTGAA
AGCGAGATCTGTTGCCAGCTCAAAGCGCGCGGTACGGAACTCGGCGCTTG
TCCCCGTCAATCTGAACGAATTATTTGCAACACCCGCTGAGTTGTTTTAT
ACACGCGTGCTCTCTTGACGAGGCTGCGGCAATCGCAACCCTCGATGACC
CAGCGGCAGTGGCCGTGGCGCAGCCGTAACCCCTCTGTATCATCCGAGTC
GGGACAAAATTCCTGAATGTAGCTGTAATCCTGCAAAGCAGCAGCGTTGA
AAATACCCCCGCGCACGTTTCCGTGCGCCGCAACCGGCCGAACTCTGCAC
CGTGCGCTCAGGTGGGTTACCTGGAGCAGGAGCCCAAGCTGAACGACGGT
GACACGGTGACGTCCAACATCGAGGCCGCCGTCGTGCCCACCCGCAACCT
CCTCAAGGAATACGAGCAGGTGAAGCCGGCGATAAAACATGAGGATTGAT
CTCGTTTTGTTTTGTTTTGTTTTGTTTTTTTTCGTTTCGCTTCGTTTTGT
TGCGTGGTGTCCTCGCATTTTGTTTGCCGATTGAACCCGCGATAGTGTGT
TGTAACATTCGTGGACAAAATATTAAAAATAACATTCGGCCAAACGTGTG
TGCACGTAAGTACGCCAGCAGAAAAATATCATTTTGTTGTTGTTGTTGTA
TGATAAGTGCGTTCGTATCAGCACGAAGGTGTGTACCTTTGTTGGCTCTT
TGTTTTCTTGGCGGAGGTTGGCGCCGGTTGATTGAGTGATTTAATTTTTG
CACATACTGTATCCTTTTTCGCATTTCACGTCTCCTGCGATACCCTGCGA
ATGCCCTGCGATACACTGCGATACTCTGCGATGCCCCGCGGCTGTTCAGC
CAGACGATAATACCATAGTGCTTAACGCAGCACTCGCTCGCCGCCTAAAG
CCGTGACAGGTAGCACCAGCTTTAACTTGCCTGTTACCGCGTTAAAAGAC
GCATAATTCTCCCCGATAAGCTTATTTCGCCGTCATGTCCTACCACATAC
ATTTGCGAAAGGAAATTGTTGCAGCAGACCCCCGTTGGTGGCGACAAACG
AAGCAGGAAAAACACGCTTGCTGACCCTTGCATTTTCGTTGCCTTAAACT
GACCTTTACTCCTCATATGACGGCGAAAGAAGCTTATCGGGGAGAATTGT
GCGTCTTTTAACGCGGTAACAGGCAATTTAAAGCTGATGCTACCTGTCAC
GGCTTTAGGCGGCGAGCGAGTGCTGCGTTAAGCACTATGGTATTATCGTC
TGGCTGGACAGCCGCGGGGTATCGCAGAGTATCGCAGTGTATCGCAGGGC
ATTCGCAGGGTATCGCAGGAGACGTGAAATGCGAAAAAGGATACAACGGG
ACATGTATTCGAGGCTGTTGTGCGCGCAGCCCCGCTCGCGGGCGTTTGGT
GCGACCCCGGTAGGCACCGGCACAATGTCATTGGTGAGCACGGTACAGCT
ATTAGCCCTCAGTAACCTCCCGCCAGCGGCAAACATGGATGGTTGGTGAA
TGACGTCATATGTTTAATCGCAGATGGTTTGTGGCAAGGGCTCTCCCCCG
CGCGCCACGTCGCGCCTTAGCATCCGGTTGGCGTGGTGGAGCTGCTCGCG
CGTGGGACTCGATATAACCAAACGTGATCGAAAAATATGATGTGCTATCA
ATAGTGTAGTCATGCCGGAGGGTACGGTTTACGTCGTCGGCCCCGAGCCG
CCAAGACATGAAACGGCAGTATCCTCTGGCCTTTCGTCTCCAAGTACATG
GTTACGATTCGATCGTATGGCACCTCCTTCCGCTTCTCCCGCCCGCCCAA
TGGTCGCCGCTGAAGGTCTCGAACGACCTGTCGACCGAAGGCGCGGACAT
GGACAAGTTGTCGAAGGAAATGGATCGGCTCCAAAACGCCATCGAAGCGA
CCAACGGGTGGGAGCTGGACCGCGTGCTGGAGCGCGCGATGGATGCCCTG
AGGTGCCCGGACGGCGATGCCTTGGTGGCCAACCTGTCAGGTCTGTTTTG
ATTGATGCGTGCTTGGGTGGTGTGCGGTGTAAGCGGTATGGTGTAAGCGG
GCTCCGAATGTTTCTTAGGTTACGGAAGGTGAGGTTTCAGAGCTGTTTAC
CGTTACAGTTGGGGACTTCGCAAAGAAAGGCGAAAAGTTTCGTCTGGAAT
CCGTGATTCGTGGTGTCGTCGTTCGTCGCGATACGAAATAGTTAGGGTCG
TTTGAAGGCAAGATACCAGGGGTTTCGCGCGTGTGTAAGAGGGGCTAATG
GCTACTGTAACTGCAATTTTTTCGTCGATATCGTTGACCGACTATTAATA
GTATAGTATAATTGCAAAACAACACGCCGTGAAGCCCTTGATGTCTCTTA
TGAGGTTTTCCGTTCCGTTTTGATTCACGCTGCGCTTTTTTTGTTCGGCA
TGGTTTCGCCAGCTCCGTACAATACGAAGTTTTTTTTTTCTCCAAATCTG
TGTCCTCGTGCATGCAGGTAGGTAGGTGTGCCTACGCCGCAAACGTTGAA
GTGTCCTGCTCAAAAGCTGTTATAATAGAATAGTTGTTATTGTCAATGTA
AAGTCCGCCTATTGTAGGTGCAGTGGCCGTGGCCGTGTTTGGACAAACTA
TCCATGCTTCAACAGAGGCAACGGCACCTTTGTTTTTTTGTCAACATTCT
CCGCTTACCAATAATATCCGTCACGTCGGCGCCATGCGCCGTACAGAACG
TTTCCTCCAAACATCCCCCTGACAGCATAGAGCAGCGCAGTATTGCCACA
CCCAGCACGTGATTTAAAAAAAAAACGCGGGCAGACGGGGCGAGCCATTA
AGTTTTGACAACAGACAGGATTTTCGGAGCACGTCCAGCATTCGGAAACT
AGGCAGATTAAAAACAAGACCAACCACGAAAACGGGGGGGTGAAATGATA
CCATCATATTGGTTTTTCGGATTTTACACCGCCCGGGAAAAAACACAGGC
GGAGAACGGCGTCGAGTGGCCTTGTGCAAACTGCTTCTGAGGCGGCCGGA
CCTGCTCCTTCTGGACGAGCCGACCAACCATCTCGACGCGGAGAGCGTGG
CGTGGATGGAGGATTTCCTGAAGGGGTTCCCCGGCACCGTGGTGGCCATC
ACGCACGACAGGTAT
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Coding sequence (CDS) from alignment at S-dermatodea_contig1037:215..5979-

>mRNA_S-dermatodea_contig1037.273.1 ID=mRNA_S-dermatodea_contig1037.273.1|Name=mRNA_S-dermatodea_contig1037.273.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1854bp|location=Sequence derived from alignment at S-dermatodea_contig1037:215..5979- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTCTCCTCGCAACGAGCCGATGCGTTCGGGTTCGGCGTGAGACCCACCGC
CAACCTTGCCGCATGGCGCTCCCCAACCAATGCCGTAAACGCCGTCGGCG
GCGCGGGCGGCGCGGCTCGCGGGATGACCATGTACTCGGCGTTCAAGAAG
AAGGGCGGGGGGAAGAAGAAAGGAAAGGCAGGCGGCAAAAAGCCTCCGAG
CGGCGGCGGGAAGGGCGGGGGGGATGGGGGGCCTCCTTCTCCTTCCGTTG
ACACTTCGAGGAAGCTCTCCTCGCAACGAGCCGATGCGTTCGGGTTCGGC
GTGAGACCCACCGCCAACCTTGCCGCATGGCGCTCCCCAACCAATGCCGT
AAACGCCGTCGGCGGCGCGGGCGGCGCGGCTCGCGGGATGACCATGTACT
CGGCGTTCAAGAAGAAGGGCGGGGGGAAGAAGAAAGGAAAGGCAGGCGGC
AAAAAGCCTCCGAGCGGCGGCGGGAAGGGCGGGGGGGATGGGGGGCCTCC
TTCTCCTTCCGTTGACACTTCGAGGAAGGATTACGTGTACCAGATGAACC
GACTGACCAAGTCATTCGGCAAGGGGGTTAGCATCCGCCCTGTGCTCAAG
GACGTAAGCCTGTCCTTTTACCCCGGGGCAAAGATCGGCGTCCTGGGATC
CAACGGCTCGGGAAAGTCCACCCTCATGAAGGATTACGTGTACCAGATGA
ACCGACTGACCAAGTCATTCGGCAAGGGGGTTAGCATCCGCCCTGTGCTC
AAGGACGTAAGCCTGTCCTTTTACCCCGGGGCAAAGATCGGCGTCCTGGG
ATCCAACGGCTCGGGAAAGTCCACCCTCATGAAGATCATGGCGGGCCTAG
ACGACGAATTCGAGGGGGAGTCCCGACTGAGCGACTGGGCTAAAATCATG
GCGGGCCTAGACGACGAATTCGAGGGGGAGTCCCGACTGAGCGACTGGGC
TAAAGTGGGTTACCTGGAGCAGGAGCCCAAGCTGAACGACGGTGACACGG
TGACGTCCAACATCGAGGCCGCCGTCGTGCCCACCCGCAACCTCCTCAAG
GAATACGAGCAGGTGGGTTACCTGGAGCAGGAGCCCAAGCTGAACGACGG
TGACACGGTGACGTCCAACATCGAGGCCGCCGTCGTGCCCACCCGCAACC
TCCTCAAGGAATACGAGCAGGTCTCGAACGACCTGTCGACCGAAGGCGCG
GACATGGACAAGTTGTCGAAGGAAATGGATCGGCTCCAAAACGCCATCGA
AGCGACCAACGGGTGGGAGCTGGACCGCGTGCTGGAGCGCGCGATGGATG
CCCTGAGGTGCCCGGACGGCGATGCCTTGGTGGCCAACCTGTCAGGTCTC
GAACGACCTGTCGACCGAAGGCGCGGACATGGACAAGTTGTCGAAGGAAA
TGGATCGGCTCCAAAACGCCATCGAAGCGACCAACGGGTGGGAGCTGGAC
CGCGTGCTGGAGCGCGCGATGGATGCCCTGAGGTGCCCGGACGGCGATGC
CTTGGTGGCCAACCTGTCAGGCGGAGAACGGCGTCGAGTGGCCTTGTGCA
AACTGCTTCTGAGGCGGCCGGACCTGCTCCTTCTGGACGAGCCGACCAAC
CATCTCGACGCGGAGAGCGTGGCGTGGATGGAGGATTTCCTGAAGGGGTT
CCCCGGCACCGTGGTGGCCATCACGCACGACAGGTATGCGGAGAACGGCG
TCGAGTGGCCTTGTGCAAACTGCTTCTGAGGCGGCCGGACCTGCTCCTTC
TGGACGAGCCGACCAACCATCTCGACGCGGAGAGCGTGGCGTGGATGGAG
GATTTCCTGAAGGGGTTCCCCGGCACCGTGGTGGCCATCACGCACGACAG
GTAT
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