mRNA_S-dermatodea_contig10361.267.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10361.267.1
Unique NamemRNA_S-dermatodea_contig10361.267.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10361.267.1 vs. uniprot
Match: A0A812XC38_9DINO (IAN7 protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812XC38_9DINO)

HSP 1 Score: 54.3 bits (129), Expect = 6.690e-6
Identity = 37/107 (34.58%), Postives = 56/107 (52.34%), Query Frame = 1 
Query:   16 VMIVGKSGAGKSTLGNQLLNAGSEG---EFVRFFQDGGGPAGVGTVCARETSRDGSLKVIDTPGIPDPSTRNTLKYFDAIVKETRGVGALNLLIFLAKEDRTTIQQF 327
            +++VG +G GKSTLGN LL    +    E  R FQ G         CA  TS DGS+ ++DTPG+ + S    L Y   +VK    +G+++ +I + K +    Q +
Sbjct:   11 LILVGSTGQGKSTLGNFLLKPDMDHLWEEKDRTFQVGEDRFSCTQQCAVSTSADGSVTIMDTPGLNE-SHEKDLGYMINVVKTAHVLGSVHAVILVMKTESRMDQTY 116
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BLAST of mRNA_S-dermatodea_contig10361.267.1 vs. uniprot
Match: A0A812WPC2_9DINO (IAN7 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812WPC2_9DINO)

HSP 1 Score: 52.8 bits (125), Expect = 2.300e-5
Identity = 36/109 (33.03%), Postives = 55/109 (50.46%), Query Frame = 1 
Query:   16 VMIVGKSGAGKSTLGNQLLNAG-----SEGEFVRFFQDGGGPAGVGTVCARETSRDGSLKVIDTPGIPDPSTRNTLKYFDAIVKETRGVGALNLLIFLAKEDRTTIQQF 327
            +++VG +G GKSTLGN L+         E    R FQ G         CA  TS DGS+ ++DTPG+ + S    L Y   +VK    +G+++ +I + K +    Q +
Sbjct:   11 LILVGSTGQGKSTLGNFLMKPDLDHIWEENGQQRTFQVGEDRLSCTQHCAVSTSGDGSVTIMDTPGLNE-SHEKDLGYMINVVKNAHVLGSVHAVILVMKTESRMDQTY 118
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10361.267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A812XC38_9DINO6.690e-634.58IAN7 protein n=1 Tax=Symbiodinium necroappetens Ta... [more]
A0A812WPC2_9DINO2.300e-533.03IAN7 protein n=1 Tax=Symbiodinium sp. CCMP2592 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10361contigS-dermatodea_contig10361:53..454 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size402
Cds size384
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924153.4932325-UTR-S-dermatodea_contig10361:52..701622924153.4932325-UTR-S-dermatodea_contig10361:52..70Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10361 53..70 +
1694079054.190515-UTR-S-dermatodea_contig10361:52..701694079054.190515-UTR-S-dermatodea_contig10361:52..70Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10361 53..70 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924153.5095088-CDS-S-dermatodea_contig10361:70..4541622924153.5095088-CDS-S-dermatodea_contig10361:70..454Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10361 71..454 +
1694079054.1993778-CDS-S-dermatodea_contig10361:70..4541694079054.1993778-CDS-S-dermatodea_contig10361:70..454Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10361 71..454 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10361.267.1prot_S-dermatodea_contig10361.267.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10361 71..454 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10361.267.1

>prot_S-dermatodea_contig10361.267.1 ID=prot_S-dermatodea_contig10361.267.1|Name=mRNA_S-dermatodea_contig10361.267.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=128bp
MIVGKSGAGKSTLGNQLLNAGSEGEFVRFFQDGGGPAGVGTVCARETSRD
GSLKVIDTPGIPDPSTRNTLKYFDAIVKETRGVGALNLLIFLAKEDRTTI
QQFNHYKTLLKQFNYLPCEKLLVCRQPD
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mRNA from alignment at S-dermatodea_contig10361:53..454+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10361.267.1 ID=mRNA_S-dermatodea_contig10361.267.1|Name=mRNA_S-dermatodea_contig10361.267.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=402bp|location=Sequence derived from alignment at S-dermatodea_contig10361:53..454+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACATACGAACATACGGTGATGATCGTGGGAAAGTCTGGAGCCGGCAAATC
CACTCTGGGGAACCAACTGCTCAACGCAGGAAGCGAGGGGGAGTTCGTGC
GATTCTTCCAAGACGGAGGGGGGCCGGCTGGTGTGGGAACGGTGTGCGCT
CGCGAAACATCAAGGGATGGAAGCCTGAAGGTGATCGATACCCCCGGCAT
TCCAGACCCGTCCACAAGGAACACATTGAAGTACTTCGACGCTATTGTTA
AGGAGACACGCGGGGTAGGCGCTTTGAATCTGCTCATATTCTTAGCCAAA
GAAGACAGGACAACTATCCAGCAGTTCAACCACTACAAGACGCTTTTGAA
GCAGTTCAACTATCTTCCGTGTGAGAAGCTCCTGGTGTGCAGACAGCCAG
AC
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Coding sequence (CDS) from alignment at S-dermatodea_contig10361:53..454+

>mRNA_S-dermatodea_contig10361.267.1 ID=mRNA_S-dermatodea_contig10361.267.1|Name=mRNA_S-dermatodea_contig10361.267.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at S-dermatodea_contig10361:53..454+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATCGTGGGAAAGTCTGGAGCCGGCAAATCCACTCTGGGGAACCAACT
GCTCAACGCAGGAAGCGAGGGGGAGTTCGTGCGATTCTTCCAAGACGGAG
GGGGGCCGGCTGGTGTGGGAACGGTGTGCGCTCGCGAAACATCAAGGGAT
GGAAGCCTGAAGGTGATCGATACCCCCGGCATTCCAGACCCGTCCACAAG
GAACACATTGAAGTACTTCGACGCTATTGTTAAGGAGACACGCGGGGTAG
GCGCTTTGAATCTGCTCATATTCTTAGCCAAAGAAGACAGGACAACTATC
CAGCAGTTCAACCACTACAAGACGCTTTTGAAGCAGTTCAACTATCTTCC
GTGTGAGAAGCTCCTGGTGTGCAGACAGCCAGACATGATCGTGGGAAAGT
CTGGAGCCGGCAAATCCACTCTGGGGAACCAACTGCTCAACGCAGGAAGC
GAGGGGGAGTTCGTGCGATTCTTCCAAGACGGAGGGGGGCCGGCTGGTGT
GGGAACGGTGTGCGCTCGCGAAACATCAAGGGATGGAAGCCTGAAGGTGA
TCGATACCCCCGGCATTCCAGACCCGTCCACAAGGAACACATTGAAGTAC
TTCGACGCTATTGTTAAGGAGACACGCGGGGTAGGCGCTTTGAATCTGCT
CATATTCTTAGCCAAAGAAGACAGGACAACTATCCAGCAGTTCAACCACT
ACAAGACGCTTTTGAAGCAGTTCAACTATCTTCCGTGTGAGAAGCTCCTG
GTGTGCAGACAGCCAGAC
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