mRNA_S-dermatodea_contig1036.265.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1036.265.1
Unique NamemRNA_S-dermatodea_contig1036.265.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1036.265.1 vs. uniprot
Match: Q8QNP7_ESV1K (EsV-1-12 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNP7_ESV1K)

HSP 1 Score: 418 bits (1074), Expect = 1.090e-145
Identity = 223/278 (80.22%), Postives = 239/278 (85.97%), Query Frame = 1 
Query:    1 MPLLIPVANDSKGETVTPTCSKDDGPFTCLGCSKPLVLRQGEKNRWHFAHHSKDNDECSAGGESYIHLAAKLLLVNYITRFEFASKCGCLRHDHEKQYQGCTAVQEYRYDGVHSADVAVLRDGKLEAIIEVMATHKTEGEPLASRIECVGGDNVWEVEAMGVLRQQKGLTLTTDTIYVPSLLKLEDCAECAQESREAHERREKQSXXXXXXXXXLMAIETKNSEEFSQQYNERQNTXXXXXXXXXXXXNGVLMKKFFFEPGDSIDRSYGWMKAPVASP 834
            M LLIPVA +  GETVTPTC+K+DGPF CLGC+KPLVLRQG+KN+WHFAHHS ++DECSAGGE+YIHLAAKLLLV YITRFEFASKCG LRHDHEKQYQGCTAVQEYRYDGVHSADVAVLRDG LEAIIEVMATHKTEGEPLASRIE VG DNVW V+AM V RQ+K L+LTTDTI+V SLLKLEDCAECAQE +EA ERREK           LMAIE   SE +SQQYNERQNTXXXXXXXXXXXX    MKKFFF+PGDSIDRSYGWMKA  ASP
Sbjct:    1 MSLLIPVAKNKTGETVTPTCNKEDGPFACLGCAKPLVLRQGQKNQWHFAHHSNNDDECSAGGETYIHLAAKLLLVTYITRFEFASKCGRLRHDHEKQYQGCTAVQEYRYDGVHSADVAVLRDGNLEAIIEVMATHKTEGEPLASRIERVGADNVWGVDAMDVWRQRKRLSLTTDTIHVASLLKLEDCAECAQEGKEAQERREK-----------LMAIEKNKSEAYSQQYNERQNTXXXXXXXXXXXXXXXXMKKFFFKPGDSIDRSYGWMKASEASP 267
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BLAST of mRNA_S-dermatodea_contig1036.265.1 vs. uniprot
Match: A0A6H5JQD6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD6_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 2.480e-32
Identity = 76/184 (41.30%), Postives = 100/184 (54.35%), Query Frame = 1 
Query:   13 IPVANDSKGETVTPTCSKDDGPFTCLGCSKPLVLRQGEKNRWHFAHHSKDNDECSAGGESYIH-LAAKLLLVNYITRFEFASKCGCLRHDHEKQYQGCTAVQEYRYDGV--HSADVAVLRDGKLEAIIEVMATHKTEGEPLASRIECVGGDNVWEVEAMGVLRQQKGLTLTTDTIYVPSLLKLE 555
            IP+     G+ V  +CSK +GPFTCLGC   LVL QG+ N +HFAH  + +  CS  GES  H  AAKLL+  Y +R                 Y  C A QEYRY     +SADVA+ ++     I+E+   H T G+ L  R  CVG ++VWE+ A   L QQ  L  T +T+ +PSLL+ E
Sbjct:   21 IPIVQTESGKLVVSSCSKAEGPFTCLGCGGGLVLLQGKVNVYHFAH-CQHSLGCSGWGESAQHNKAAKLLVEKYCSRL----------------YTDCDAKQEYRYHNNINYSADVAIFQNHSFVPIVEISVAHVTTGDALERRTACVGANSVWEIAAGENLSQQTELFTTQNTVEIPSLLRYE 187
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BLAST of mRNA_S-dermatodea_contig1036.265.1 vs. uniprot
Match: A0A6B1BS80_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6B1BS80_9BACT)

HSP 1 Score: 61.2 bits (147), Expect = 4.450e-7
Identity = 31/64 (48.44%), Postives = 41/64 (64.06%), Query Frame = 1 
Query:   34 KGETVTPTCSK-DDGP---FTCLGCSKPLVLRQGEKNRWHFAHHSKDNDECSAGGESYIHLAAK 213
            +GE VTP  ++ + G      C+GC +PL+LR+GEK RWHFAH +K     S GGE+YIH   K
Sbjct:   12 QGELVTPDDTRLERGKGCCCVCIGCGEPLILRRGEKKRWHFAHRAKT----SCGGETYIHKVVK 71
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BLAST of mRNA_S-dermatodea_contig1036.265.1 vs. uniprot
Match: A0A6B0Z2W0_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6B0Z2W0_9CHLR)

HSP 1 Score: 60.5 bits (145), Expect = 7.980e-7
Identity = 26/43 (60.47%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:   85 CLGCSKPLVLRQGEKNRWHFAHHSKDNDECSAGGESYIHLAAK 213
            C+GC +PLVLR+GEK RWHFAH +    E S GGE+YIH   K
Sbjct:   33 CIGCDEPLVLRRGEKKRWHFAHRA----ETSCGGETYIHKVVK 71
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BLAST of mRNA_S-dermatodea_contig1036.265.1 vs. uniprot
Match: A0A6H5JKU2_9PHAE (Fibronectin type-III domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKU2_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 6.590e-5
Identity = 31/66 (46.97%), Postives = 40/66 (60.61%), Query Frame = 1 
Query:   13 IPVANDSKGETV-TPTCSKDDGPFTCLGCSKPLVLRQGEKNRWHFAHHSK-----DNDECSAGGES 192
            I +A D +G  V   T SK+DGPF+C+ C KPL LRQG K + HF H S+     ++DE  A  ES
Sbjct:   12 IQLAADPQGTHVCATTVSKEDGPFSCVMCEKPLGLRQGTKTKHHFIHKSRSSCEGNSDEHRAQAES 77
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1036.265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Q8QNP7_ESV1K1.090e-14580.22EsV-1-12 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
A0A6H5JQD6_9PHAE2.480e-3241.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6B1BS80_9BACT4.450e-748.44Uncharacterized protein n=1 Tax=Gemmatimonadetes b... [more]
A0A6B0Z2W0_9CHLR7.980e-760.47Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
A0A6H5JKU2_9PHAE6.590e-546.97Fibronectin type-III domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1036contigS-dermatodea_contig1036:14825..15661 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size837
Cds size837
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924153.4675846-CDS-S-dermatodea_contig1036:14824..156611622924153.4675846-CDS-S-dermatodea_contig1036:14824..15661Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1036 14825..15661 -
1694079054.180255-CDS-S-dermatodea_contig1036:14824..156611694079054.180255-CDS-S-dermatodea_contig1036:14824..15661Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1036 14825..15661 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1036.265.1prot_S-dermatodea_contig1036.265.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1036 14825..15661 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1036.265.1

>prot_S-dermatodea_contig1036.265.1 ID=prot_S-dermatodea_contig1036.265.1|Name=mRNA_S-dermatodea_contig1036.265.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=279bp
MPLLIPVANDSKGETVTPTCSKDDGPFTCLGCSKPLVLRQGEKNRWHFAH
HSKDNDECSAGGESYIHLAAKLLLVNYITRFEFASKCGCLRHDHEKQYQG
CTAVQEYRYDGVHSADVAVLRDGKLEAIIEVMATHKTEGEPLASRIECVG
GDNVWEVEAMGVLRQQKGLTLTTDTIYVPSLLKLEDCAECAQESREAHER
REKQSREAHKRREKLMAIETKNSEEFSQQYNERQNTTVVIIDDNTLLRNG
VLMKKFFFEPGDSIDRSYGWMKAPVASP*
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mRNA from alignment at S-dermatodea_contig1036:14825..15661-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1036.265.1 ID=mRNA_S-dermatodea_contig1036.265.1|Name=mRNA_S-dermatodea_contig1036.265.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=837bp|location=Sequence derived from alignment at S-dermatodea_contig1036:14825..15661- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCCCTTCTCATCCCCGTCGCAAACGATTCTAAAGGCGAGACGGTGAC
GCCGACCTGCTCCAAGGACGACGGCCCGTTCACGTGTCTCGGTTGTTCGA
AGCCGCTGGTCCTGAGGCAGGGTGAAAAGAATCGGTGGCATTTTGCGCAC
CATTCCAAGGACAATGACGAGTGTTCTGCCGGTGGGGAGTCGTACATCCA
CTTGGCGGCCAAGTTGCTGTTAGTCAATTACATCACCAGGTTCGAGTTCG
CCTCAAAGTGCGGTTGCCTGCGTCACGATCACGAAAAGCAATACCAAGGA
TGCACGGCGGTGCAGGAGTACCGCTACGACGGCGTACACTCCGCGGACGT
GGCCGTGTTGCGTGACGGGAAGTTGGAGGCTATCATTGAGGTCATGGCGA
CGCACAAGACCGAGGGAGAACCGTTGGCATCCAGAATAGAGTGTGTGGGG
GGAGACAATGTGTGGGAGGTGGAAGCAATGGGCGTTTTGAGACAGCAAAA
GGGTCTGACATTGACGACCGACACCATTTATGTACCTAGTTTGCTCAAGT
TAGAGGACTGTGCCGAATGTGCGCAGGAGAGTAGGGAGGCGCACGAACGA
CGGGAAAAACAGAGTAGGGAGGCGCACAAACGACGGGAAAAACTGATGGC
GATTGAGACAAAAAATTCCGAGGAATTCAGTCAACAGTACAACGAGCGAC
AGAACACCACCGTGGTCATTATCGACGACAACACGCTACTGCGAAACGGG
GTACTGATGAAAAAGTTCTTTTTTGAGCCTGGTGACAGCATTGATCGTAG
CTACGGGTGGATGAAGGCCCCCGTAGCATCCCCCTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1036:14825..15661-

>mRNA_S-dermatodea_contig1036.265.1 ID=mRNA_S-dermatodea_contig1036.265.1|Name=mRNA_S-dermatodea_contig1036.265.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1674bp|location=Sequence derived from alignment at S-dermatodea_contig1036:14825..15661- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCCCTTCTCATCCCCGTCGCAAACGATTCTAAAGGCGAGACGGTGAC
GCCGACCTGCTCCAAGGACGACGGCCCGTTCACGTGTCTCGGTTGTTCGA
AGCCGCTGGTCCTGAGGCAGGGTGAAAAGAATCGGTGGCATTTTGCGCAC
CATTCCAAGGACAATGACGAGTGTTCTGCCGGTGGGGAGTCGTACATCCA
CTTGGCGGCCAAGTTGCTGTTAGTCAATTACATCACCAGGTTCGAGTTCG
CCTCAAAGTGCGGTTGCCTGCGTCACGATCACGAAAAGCAATACCAAGGA
TGCACGGCGGTGCAGGAGTACCGCTACGACGGCGTACACTCCGCGGACGT
GGCCGTGTTGCGTGACGGGAAGTTGGAGGCTATCATTGAGGTCATGGCGA
CGCACAAGACCGAGGGAGAACCGTTGGCATCCAGAATAGAGTGTGTGGGG
GGAGACAATGTGTGGGAGGTGGAAGCAATGGGCGTTTTGAGACAGCAAAA
GGGTCTGACATTGACGACCGACACCATTTATGTACCTAGTTTGCTCAAGT
TAGAGGACTGTGCCGAATGTGCGCAGGAGAGTAGGGAGGCGCACGAACGA
CGGGAAAAACAGAGTAGGGAGGCGCACAAACGACGGGAAAAACTGATGGC
GATTGAGACAAAAAATTCCGAGGAATTCAGTCAACAGTACAACGAGCGAC
AGAACACCACCGTGGTCATTATCGACGACAACACGCTACTGCGAAACGGG
GTACTGATGAAAAAGTTCTTTTTTGAGCCTGGTGACAGCATTGATCGTAG
CTACGGGTGGATGAAGGCCCCCGTAGCATCCCCCTAGATGCCCCTTCTCA
TCCCCGTCGCAAACGATTCTAAAGGCGAGACGGTGACGCCGACCTGCTCC
AAGGACGACGGCCCGTTCACGTGTCTCGGTTGTTCGAAGCCGCTGGTCCT
GAGGCAGGGTGAAAAGAATCGGTGGCATTTTGCGCACCATTCCAAGGACA
ATGACGAGTGTTCTGCCGGTGGGGAGTCGTACATCCACTTGGCGGCCAAG
TTGCTGTTAGTCAATTACATCACCAGGTTCGAGTTCGCCTCAAAGTGCGG
TTGCCTGCGTCACGATCACGAAAAGCAATACCAAGGATGCACGGCGGTGC
AGGAGTACCGCTACGACGGCGTACACTCCGCGGACGTGGCCGTGTTGCGT
GACGGGAAGTTGGAGGCTATCATTGAGGTCATGGCGACGCACAAGACCGA
GGGAGAACCGTTGGCATCCAGAATAGAGTGTGTGGGGGGAGACAATGTGT
GGGAGGTGGAAGCAATGGGCGTTTTGAGACAGCAAAAGGGTCTGACATTG
ACGACCGACACCATTTATGTACCTAGTTTGCTCAAGTTAGAGGACTGTGC
CGAATGTGCGCAGGAGAGTAGGGAGGCGCACGAACGACGGGAAAAACAGA
GTAGGGAGGCGCACAAACGACGGGAAAAACTGATGGCGATTGAGACAAAA
AATTCCGAGGAATTCAGTCAACAGTACAACGAGCGACAGAACACCACCGT
GGTCATTATCGACGACAACACGCTACTGCGAAACGGGGTACTGATGAAAA
AGTTCTTTTTTGAGCCTGGTGACAGCATTGATCGTAGCTACGGGTGGATG
AAGGCCCCCGTAGCATCCCCCTAG
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