mRNA_S-dermatodea_contig1036.264.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig1036.264.1 vs. uniprot
Match: A0A6H5K2U9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2U9_9PHAE) HSP 1 Score: 110 bits (275), Expect = 6.260e-27 Identity = 62/108 (57.41%), Postives = 74/108 (68.52%), Query Frame = 1
Query: 25 NATIRVDRTSRKGSVVDVAKLVLGCGADEAEAACVKIGALPNEEQR-----QINGNGGLTAVAEVDVLIELVWLLPAEIADDVRREISHTVCKVLRGDPKLVIETEKR 333
+A IRVDR S KGSV DVAKLVL C +EAE A K+ ++ R QIN G LT VA V++L+E+VWLLP IADDVRR+ISH VCK L GD +LV E+E R
Sbjct: 2 DAVIRVDRASNKGSVTDVAKLVLKCDDEEAEKAVRKLLGATSDTDRDFLRVQINNRGRLTLVAGVNMLVEIVWLLPGVIADDVRRDISHKVCKALGGDTRLVEESETR 109
BLAST of mRNA_S-dermatodea_contig1036.264.1 vs. uniprot
Match: B5LWF9_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWF9_9PHYC) HSP 1 Score: 79.7 bits (195), Expect = 1.270e-16 Identity = 44/117 (37.61%), Postives = 69/117 (58.97%), Query Frame = 1
Query: 16 NTENATIRVDRTSRKGSVVDVAKLVLGCGADEAEA-----------ACVKIGALPNEEQRQINGNGGLTAVAEVDVLIELVWLLPAEIADDVRREISHTVCKVLRGDPKLVIETEKR 333
N EN++IRVD+ S+KGSV+D ++VLGC + CV+I +R+ING G T VA+ +L+++V LLP + A + RR+ + VC++L G LV+E ++R
Sbjct: 7 NVENSSIRVDKASKKGSVIDTVRMVLGCTSSAGNTYLRNLTSRFPDICVQI------TRRRINGKGRATPVADTTLLVQIVLLLPGQKAIEFRRKSAEKVCRLLGGGTSLVVEMDQR 117
BLAST of mRNA_S-dermatodea_contig1036.264.1 vs. uniprot
Match: D8LP49_ECTSI (EsV-1-210/211 paralog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP49_ECTSI) HSP 1 Score: 79.7 bits (195), Expect = 2.120e-15 Identity = 48/116 (41.38%), Postives = 67/116 (57.76%), Query Frame = 1
Query: 1 MDATTNTENATIRVDRTSRKGSVVDVAKLVLGCGADEAEAACVKI-GALPNEEQR----QINGNGGLTAVAEVDVLIELVWLLPAEIADDVRREISHTVCKVLRGDPKLVIETEKR 333
MD + + ATIR D+ ++KGSV+D ++VL C + A A ++ A P R ++NG G T VA+ LIE+VWLLP + A RR+ S VC++L GD LV E E R
Sbjct: 1 MDLIESMDGATIRADKQTKKGSVMDTIRMVLRCDSSNANTAFGRLLQAHPELGSRCTRSKLNGKGNETPVADAKTLIEIVWLLPGKKAHSFRRQSSEKVCRLLGGDLSLVSEIEAR 116
BLAST of mRNA_S-dermatodea_contig1036.264.1 vs. uniprot
Match: B5LWG1_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWG1_9PHYC) HSP 1 Score: 78.2 bits (191), Expect = 8.970e-15 Identity = 44/110 (40.00%), Postives = 65/110 (59.09%), Query Frame = 1
Query: 19 TENATIRVDRTSRKGSVVDVAKLVLGCGADEAEAAC----VKIGALPNE-EQRQINGNGGLTAVAEVDVLIELVWLLPAEIADDVRREISHTVCKVLRGDPKLVIETEKR 333
T+N +IR D T++KGSV+DV + VLGC + A + L N QING G T VA+ L+E+++LLP + A RR+ + VC+++ GD LV+E E+R
Sbjct: 8 TDNFSIRADATTKKGSVIDVIRSVLGCSSSAANTNLSNLKTRFSDLGNNIAHAQINGKGKSTPVADAKTLVEIIFLLPGQKACKFRRKSAEKVCRLMGGDMSLVVEIEQR 117
BLAST of mRNA_S-dermatodea_contig1036.264.1 vs. uniprot
Match: B5LWF8_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWF8_9PHYC) HSP 1 Score: 76.3 bits (186), Expect = 1.490e-14 Identity = 46/117 (39.32%), Postives = 67/117 (57.26%), Query Frame = 1
Query: 16 NTENATIRVDRTSRKGSVVDVAKLVLGCGADEAEA-----------ACVKIGALPNEEQRQINGNGGLTAVAEVDVLIELVWLLPAEIADDVRREISHTVCKVLRGDPKLVIETEKR 333
N E+++IRVD+ S+KGSV+D K+VLGC + CV I L +ING G T VA+ +L+++V LLP + A + RR+ + VC++L GD LV E E+R
Sbjct: 7 NMESSSIRVDKASKKGSVIDTVKMVLGCTSSSGNTNLRRLTTRFPDLCVDITRL------RINGKGMATPVADAKLLVQVVLLLPGQKAIEFRRKSADVVCRLLGGDMSLVKEIEQR 117
BLAST of mRNA_S-dermatodea_contig1036.264.1 vs. uniprot
Match: B5LWM4_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWM4_9PHYC) HSP 1 Score: 72.0 bits (175), Expect = 1.730e-12 Identity = 42/116 (36.21%), Postives = 63/116 (54.31%), Query Frame = 1
Query: 1 MDATTNTENATIRVDRTSRKGSVVDVAKLVLGCGADEAEAACVKI-----GALPNEEQRQINGNGGLTAVAEVDVLIELVWLLPAEIADDVRREISHTVCKVLRGDPKLVIETEKR 333
MD + + +TIRVD+ ++ GSV+D ++VL C + A + ++ G Q ++NG G T VA+ LIE+VWLLP A R + +C++L GD LV E E R
Sbjct: 19 MDLIESMDGSTIRVDKNTKLGSVIDTIRMVLECDSSNANTSLGRLVLSHPGLGEKYTQLKVNGRGKPTPVADAKTLIEIVWLLPGRRAHAFRCQRVGKICRLLGGDTSLVSEIEAR 134
BLAST of mRNA_S-dermatodea_contig1036.264.1 vs. uniprot
Match: A0A835YX96_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX96_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 8.760e-10 Identity = 44/108 (40.74%), Postives = 58/108 (53.70%), Query Frame = 1
Query: 28 ATIRVDRTSRKGSVVDVAKLVLGCGADEAEAACVKIGALPNEEQRQ------INGNGGLTAVAEVDVLIELVWLLPAEIADDVRREISHTVCKVLRGDPKLVIETEKR 333
A+IRVDR + GSV+DV ++V A V +E R+ ING G T A VL+E+V+LLP + A D RR + TVC+VL GD +V E E R
Sbjct: 8 ASIRVDRATGLGSVIDVIRMVNPNQERTAATKAVAYLTADDETLRRSIQHVRINGKGKPTPCASARVLVEVVFLLPGKAARDFRRASATTVCRVLGGDLSIVGEVEAR 115 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1036.264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig1036.264.1 >prot_S-dermatodea_contig1036.264.1 ID=prot_S-dermatodea_contig1036.264.1|Name=mRNA_S-dermatodea_contig1036.264.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=111bp MDATTNTENATIRVDRTSRKGSVVDVAKLVLGCGADEAEAACVKIGALPNback to top mRNA from alignment at S-dermatodea_contig1036:8936..9268+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig1036.264.1 ID=mRNA_S-dermatodea_contig1036.264.1|Name=mRNA_S-dermatodea_contig1036.264.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=333bp|location=Sequence derived from alignment at S-dermatodea_contig1036:8936..9268+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig1036:8936..9268+ >mRNA_S-dermatodea_contig1036.264.1 ID=mRNA_S-dermatodea_contig1036.264.1|Name=mRNA_S-dermatodea_contig1036.264.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at S-dermatodea_contig1036:8936..9268+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |