mRNA_S-dermatodea_contig1036.264.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1036.264.1
Unique NamemRNA_S-dermatodea_contig1036.264.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig1036.264.1 vs. uniprot
Match: A0A6H5K2U9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2U9_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 6.260e-27
Identity = 62/108 (57.41%), Postives = 74/108 (68.52%), Query Frame = 1
Query:   25 NATIRVDRTSRKGSVVDVAKLVLGCGADEAEAACVKIGALPNEEQR-----QINGNGGLTAVAEVDVLIELVWLLPAEIADDVRREISHTVCKVLRGDPKLVIETEKR 333
            +A IRVDR S KGSV DVAKLVL C  +EAE A  K+    ++  R     QIN  G LT VA V++L+E+VWLLP  IADDVRR+ISH VCK L GD +LV E+E R
Sbjct:    2 DAVIRVDRASNKGSVTDVAKLVLKCDDEEAEKAVRKLLGATSDTDRDFLRVQINNRGRLTLVAGVNMLVEIVWLLPGVIADDVRRDISHKVCKALGGDTRLVEESETR 109          
BLAST of mRNA_S-dermatodea_contig1036.264.1 vs. uniprot
Match: B5LWF9_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWF9_9PHYC)

HSP 1 Score: 79.7 bits (195), Expect = 1.270e-16
Identity = 44/117 (37.61%), Postives = 69/117 (58.97%), Query Frame = 1
Query:   16 NTENATIRVDRTSRKGSVVDVAKLVLGCGADEAEA-----------ACVKIGALPNEEQRQINGNGGLTAVAEVDVLIELVWLLPAEIADDVRREISHTVCKVLRGDPKLVIETEKR 333
            N EN++IRVD+ S+KGSV+D  ++VLGC +                 CV+I       +R+ING G  T VA+  +L+++V LLP + A + RR+ +  VC++L G   LV+E ++R
Sbjct:    7 NVENSSIRVDKASKKGSVIDTVRMVLGCTSSAGNTYLRNLTSRFPDICVQI------TRRRINGKGRATPVADTTLLVQIVLLLPGQKAIEFRRKSAEKVCRLLGGGTSLVVEMDQR 117          
BLAST of mRNA_S-dermatodea_contig1036.264.1 vs. uniprot
Match: D8LP49_ECTSI (EsV-1-210/211 paralog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP49_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 2.120e-15
Identity = 48/116 (41.38%), Postives = 67/116 (57.76%), Query Frame = 1
Query:    1 MDATTNTENATIRVDRTSRKGSVVDVAKLVLGCGADEAEAACVKI-GALPNEEQR----QINGNGGLTAVAEVDVLIELVWLLPAEIADDVRREISHTVCKVLRGDPKLVIETEKR 333
            MD   + + ATIR D+ ++KGSV+D  ++VL C +  A  A  ++  A P    R    ++NG G  T VA+   LIE+VWLLP + A   RR+ S  VC++L GD  LV E E R
Sbjct:    1 MDLIESMDGATIRADKQTKKGSVMDTIRMVLRCDSSNANTAFGRLLQAHPELGSRCTRSKLNGKGNETPVADAKTLIEIVWLLPGKKAHSFRRQSSEKVCRLLGGDLSLVSEIEAR 116          
BLAST of mRNA_S-dermatodea_contig1036.264.1 vs. uniprot
Match: B5LWG1_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWG1_9PHYC)

HSP 1 Score: 78.2 bits (191), Expect = 8.970e-15
Identity = 44/110 (40.00%), Postives = 65/110 (59.09%), Query Frame = 1
Query:   19 TENATIRVDRTSRKGSVVDVAKLVLGCGADEAEAAC----VKIGALPNE-EQRQINGNGGLTAVAEVDVLIELVWLLPAEIADDVRREISHTVCKVLRGDPKLVIETEKR 333
            T+N +IR D T++KGSV+DV + VLGC +  A         +   L N     QING G  T VA+   L+E+++LLP + A   RR+ +  VC+++ GD  LV+E E+R
Sbjct:    8 TDNFSIRADATTKKGSVIDVIRSVLGCSSSAANTNLSNLKTRFSDLGNNIAHAQINGKGKSTPVADAKTLVEIIFLLPGQKACKFRRKSAEKVCRLMGGDMSLVVEIEQR 117          
BLAST of mRNA_S-dermatodea_contig1036.264.1 vs. uniprot
Match: B5LWF8_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWF8_9PHYC)

HSP 1 Score: 76.3 bits (186), Expect = 1.490e-14
Identity = 46/117 (39.32%), Postives = 67/117 (57.26%), Query Frame = 1
Query:   16 NTENATIRVDRTSRKGSVVDVAKLVLGCGADEAEA-----------ACVKIGALPNEEQRQINGNGGLTAVAEVDVLIELVWLLPAEIADDVRREISHTVCKVLRGDPKLVIETEKR 333
            N E+++IRVD+ S+KGSV+D  K+VLGC +                 CV I  L      +ING G  T VA+  +L+++V LLP + A + RR+ +  VC++L GD  LV E E+R
Sbjct:    7 NMESSSIRVDKASKKGSVIDTVKMVLGCTSSSGNTNLRRLTTRFPDLCVDITRL------RINGKGMATPVADAKLLVQVVLLLPGQKAIEFRRKSADVVCRLLGGDMSLVKEIEQR 117          
BLAST of mRNA_S-dermatodea_contig1036.264.1 vs. uniprot
Match: B5LWM4_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWM4_9PHYC)

HSP 1 Score: 72.0 bits (175), Expect = 1.730e-12
Identity = 42/116 (36.21%), Postives = 63/116 (54.31%), Query Frame = 1
Query:    1 MDATTNTENATIRVDRTSRKGSVVDVAKLVLGCGADEAEAACVKI-----GALPNEEQRQINGNGGLTAVAEVDVLIELVWLLPAEIADDVRREISHTVCKVLRGDPKLVIETEKR 333
            MD   + + +TIRVD+ ++ GSV+D  ++VL C +  A  +  ++     G      Q ++NG G  T VA+   LIE+VWLLP   A   R +    +C++L GD  LV E E R
Sbjct:   19 MDLIESMDGSTIRVDKNTKLGSVIDTIRMVLECDSSNANTSLGRLVLSHPGLGEKYTQLKVNGRGKPTPVADAKTLIEIVWLLPGRRAHAFRCQRVGKICRLLGGDTSLVSEIEAR 134          
BLAST of mRNA_S-dermatodea_contig1036.264.1 vs. uniprot
Match: A0A835YX96_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX96_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 8.760e-10
Identity = 44/108 (40.74%), Postives = 58/108 (53.70%), Query Frame = 1
Query:   28 ATIRVDRTSRKGSVVDVAKLVLGCGADEAEAACVKIGALPNEEQRQ------INGNGGLTAVAEVDVLIELVWLLPAEIADDVRREISHTVCKVLRGDPKLVIETEKR 333
            A+IRVDR +  GSV+DV ++V       A    V      +E  R+      ING G  T  A   VL+E+V+LLP + A D RR  + TVC+VL GD  +V E E R
Sbjct:    8 ASIRVDRATGLGSVIDVIRMVNPNQERTAATKAVAYLTADDETLRRSIQHVRINGKGKPTPCASARVLVEVVFLLPGKAARDFRRASATTVCRVLGGDLSIVGEVEAR 115          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1036.264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5K2U9_9PHAE6.260e-2757.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B5LWF9_9PHYC1.270e-1637.61Uncharacterized protein n=1 Tax=Feldmannia species... [more]
D8LP49_ECTSI2.120e-1541.38EsV-1-210/211 paralog n=1 Tax=Ectocarpus siliculos... [more]
B5LWG1_9PHYC8.970e-1540.00Uncharacterized protein n=1 Tax=Feldmannia species... [more]
B5LWF8_9PHYC1.490e-1439.32Uncharacterized protein n=1 Tax=Feldmannia species... [more]
B5LWM4_9PHYC1.730e-1236.21Uncharacterized protein n=1 Tax=Feldmannia species... [more]
A0A835YX96_9STRA8.760e-1040.74Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1036contigS-dermatodea_contig1036:8936..9268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.9
Seed ortholog evalue4.2e-13
Seed eggNOG ortholog2880.D8LP49
EggNOG OGs2EUDG@1,2SWJG@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size333
Cds size333
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924153.4283886-CDS-S-dermatodea_contig1036:8935..92681622924153.4283886-CDS-S-dermatodea_contig1036:8935..9268Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1036 8936..9268 +
1694079054.1630795-CDS-S-dermatodea_contig1036:8935..92681694079054.1630795-CDS-S-dermatodea_contig1036:8935..9268Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1036 8936..9268 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1036.264.1prot_S-dermatodea_contig1036.264.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1036 8936..9268 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1036.264.1

>prot_S-dermatodea_contig1036.264.1 ID=prot_S-dermatodea_contig1036.264.1|Name=mRNA_S-dermatodea_contig1036.264.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=111bp
MDATTNTENATIRVDRTSRKGSVVDVAKLVLGCGADEAEAACVKIGALPN
EEQRQINGNGGLTAVAEVDVLIELVWLLPAEIADDVRREISHTVCKVLRG
DPKLVIETEKR
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mRNA from alignment at S-dermatodea_contig1036:8936..9268+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1036.264.1 ID=mRNA_S-dermatodea_contig1036.264.1|Name=mRNA_S-dermatodea_contig1036.264.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=333bp|location=Sequence derived from alignment at S-dermatodea_contig1036:8936..9268+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGACGCCACGACAAACACCGAGAACGCCACCATCCGCGTTGATCGAAC TTCGCGTAAGGGATCGGTCGTGGACGTCGCCAAATTGGTGCTTGGGTGTG GTGCAGACGAGGCAGAGGCCGCTTGTGTCAAGATAGGAGCGCTCCCGAAC GAAGAGCAGCGCCAGATCAATGGCAACGGCGGACTCACGGCCGTCGCTGA GGTCGACGTGCTCATCGAGCTGGTGTGGCTGCTGCCGGCCGAGATAGCAG ACGACGTTCGTCGCGAGATATCACACACCGTGTGCAAGGTCCTGAGGGGG GACCCCAAGCTTGTCATCGAGACGGAAAAACGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig1036:8936..9268+

>mRNA_S-dermatodea_contig1036.264.1 ID=mRNA_S-dermatodea_contig1036.264.1|Name=mRNA_S-dermatodea_contig1036.264.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at S-dermatodea_contig1036:8936..9268+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGACGCCACGACAAACACCGAGAACGCCACCATCCGCGTTGATCGAAC
TTCGCGTAAGGGATCGGTCGTGGACGTCGCCAAATTGGTGCTTGGGTGTG
GTGCAGACGAGGCAGAGGCCGCTTGTGTCAAGATAGGAGCGCTCCCGAAC
GAAGAGCAGCGCCAGATCAATGGCAACGGCGGACTCACGGCCGTCGCTGA
GGTCGACGTGCTCATCGAGCTGGTGTGGCTGCTGCCGGCCGAGATAGCAG
ACGACGTTCGTCGCGAGATATCACACACCGTGTGCAAGGTCCTGAGGGGG
GACCCCAAGCTTGTCATCGAGACGGAAAAACGTATGGACGCCACGACAAA
CACCGAGAACGCCACCATCCGCGTTGATCGAACTTCGCGTAAGGGATCGG
TCGTGGACGTCGCCAAATTGGTGCTTGGGTGTGGTGCAGACGAGGCAGAG
GCCGCTTGTGTCAAGATAGGAGCGCTCCCGAACGAAGAGCAGCGCCAGAT
CAATGGCAACGGCGGACTCACGGCCGTCGCTGAGGTCGACGTGCTCATCG
AGCTGGTGTGGCTGCTGCCGGCCGAGATAGCAGACGACGTTCGTCGCGAG
ATATCACACACCGTGTGCAAGGTCCTGAGGGGGGACCCCAAGCTTGTCAT
CGAGACGGAAAAACGT
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