mRNA_S-dermatodea_contig1036.263.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1036.263.1
Unique NamemRNA_S-dermatodea_contig1036.263.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig1036.263.1 vs. uniprot
Match: A0A6H5JDQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDQ1_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 9.170e-35
Identity = 61/73 (83.56%), Postives = 65/73 (89.04%), Query Frame = 1
Query:    1 IEIIWLLPARAAKEFRRQSAHTICRVLGGDTSLCDEIEQRYARLQSTEEGRAYQNFVMDQGPAKKTRSEAPFW 219
            +EIIWLLP+ AAKEFRRQSA TI RVLGGDTSLCDEIEQR  RLQSTEEGRAYQ F++DQGPAKK RSE PFW
Sbjct:  138 VEIIWLLPSNAAKEFRRQSAQTITRVLGGDTSLCDEIEQRCDRLQSTEEGRAYQGFLLDQGPAKKQRSEEPFW 210          
BLAST of mRNA_S-dermatodea_contig1036.263.1 vs. uniprot
Match: A0A6H5K200_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K200_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 3.670e-30
Identity = 58/73 (79.45%), Postives = 63/73 (86.30%), Query Frame = 1
Query:    1 IEIIWLLPARAAKEFRRQSAHTICRVLGGDTSLCDEIEQRYARLQSTEEGRAYQNFVMDQGPAKKTRSEAPFW 219
            +EIIWLLP+ +AKEFRRQSA TICRVLGGD SLC EIEQR ARLQSTEEGRAYQ+FV DQGPAKK R+  P W
Sbjct:  227 VEIIWLLPSGSAKEFRRQSAETICRVLGGDISLCGEIEQRCARLQSTEEGRAYQSFVTDQGPAKKQRAAMPAW 299          
BLAST of mRNA_S-dermatodea_contig1036.263.1 vs. uniprot
Match: Q8QN79_ESV1K (EsV-1-211 n=2 Tax=root TaxID=1 RepID=Q8QN79_ESV1K)

HSP 1 Score: 119 bits (298), Expect = 4.920e-30
Identity = 58/73 (79.45%), Postives = 63/73 (86.30%), Query Frame = 1
Query:    1 IEIIWLLPARAAKEFRRQSAHTICRVLGGDTSLCDEIEQRYARLQSTEEGRAYQNFVMDQGPAKKTRSEAPFW 219
            +EIIWLLP+ AAKEFRRQSA TICRVLGGD SLC EIEQR ARL+STEEGRAYQ+FV DQGPAKK R+  P W
Sbjct:  227 VEIIWLLPSGAAKEFRRQSAETICRVLGGDISLCGEIEQRCARLRSTEEGRAYQSFVTDQGPAKKQRAAMPAW 299          
BLAST of mRNA_S-dermatodea_contig1036.263.1 vs. uniprot
Match: A0A6H5L5N7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5N7_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 1.380e-28
Identity = 57/71 (80.28%), Postives = 62/71 (87.32%), Query Frame = 1
Query:    1 IEIIWLLPARAAKEFRRQSAHTICRVLGGDTSLCDEIEQRYARLQSTEEGRAYQNFVMDQGPAKKTRSEAP 213
            +EIIWLLP+ AAKEFRRQSA TICRVLGGD SLC EIEQR ARLQSTEEGRAYQ+F+ DQGPAKK R+  P
Sbjct:  227 VEIIWLLPSGAAKEFRRQSAETICRVLGGDISLCGEIEQRCARLQSTEEGRAYQSFMTDQGPAKKQRAAMP 297          
BLAST of mRNA_S-dermatodea_contig1036.263.1 vs. uniprot
Match: D8LPL9_ECTSI (EsV-1-210 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPL9_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 2.000e-23
Identity = 52/73 (71.23%), Postives = 59/73 (80.82%), Query Frame = 1
Query:    1 IEIIWLLPARAAKEFRRQSAHTICRVLGGDTSLCDEIEQRYARLQSTEEGRAYQNFVMDQGPAKKTRSEAPFW 219
            IEIIWLLPARAA+EFR+QSA TI RVLGGD SLC EIEQR ARLQ+TE+GRAYQ+ +  Q P KK +S  P W
Sbjct:  242 IEIIWLLPARAAREFRKQSADTIARVLGGDVSLCAEIEQRCARLQNTEDGRAYQSVMTGQAPTKKHKS-LPEW 313          
BLAST of mRNA_S-dermatodea_contig1036.263.1 vs. uniprot
Match: Q8QN80_ESV1K (EsV-1-210 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN80_ESV1K)

HSP 1 Score: 100 bits (250), Expect = 2.760e-23
Identity = 52/73 (71.23%), Postives = 59/73 (80.82%), Query Frame = 1
Query:    1 IEIIWLLPARAAKEFRRQSAHTICRVLGGDTSLCDEIEQRYARLQSTEEGRAYQNFVMDQGPAKKTRSEAPFW 219
            IEIIWLLPARAA+EFR+QSA TI RVLGGD SLC EIEQR ARLQ+TEEGRAYQ+ +  + P KK +S  P W
Sbjct:  242 IEIIWLLPARAAREFRKQSADTIARVLGGDVSLCAEIEQRCARLQNTEEGRAYQSVMTGEAPPKKHKS-LPEW 313          
BLAST of mRNA_S-dermatodea_contig1036.263.1 vs. uniprot
Match: B5LW93_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LW93_9PHYC)

HSP 1 Score: 87.8 bits (216), Expect = 1.160e-18
Identity = 43/66 (65.15%), Postives = 50/66 (75.76%), Query Frame = 1
Query:    4 EIIWLLPARAAKEFRRQSAHTICRVLGGDTSLCDEIEQRYARLQSTEEGRAYQNFVMDQGPAKKTR 201
            EIIWLLP RAA+EFRRQSA  + RVLGGDT+LC EIE+R   LQST EGRA+QNF +     +K R
Sbjct:  195 EIIWLLPGRAAREFRRQSAEIVMRVLGGDTTLCKEIEERSVGLQSTREGRAFQNFALGGESGEKKR 260          
BLAST of mRNA_S-dermatodea_contig1036.263.1 vs. uniprot
Match: A0A6H5JW74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW74_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 3.830e-16
Identity = 37/58 (63.79%), Postives = 47/58 (81.03%), Query Frame = 1
Query:    1 IEIIWLLPARAAKEFRRQSAHTICRVLGGDTSLCDEIEQRYARLQSTEEGRAYQNFVM 174
            IEI+WLLP + A+EFRRQS+  +CR+LGGD SL  EIE R+A LQSTE+GRA Q F++
Sbjct:  974 IEIVWLLPGKKAREFRRQSSEKVCRLLGGDLSLVSEIEARHATLQSTEQGRATQEFLL 1031          
BLAST of mRNA_S-dermatodea_contig1036.263.1 vs. uniprot
Match: A0A835YZ27_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ27_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 7.170e-16
Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 1
Query:    1 IEIIWLLPARAAKEFRRQSAHTICRVLGGDTSLCDEIEQRYARLQSTEEGRAYQNFVM 174
            +EI+W LP +AA+EFRR SA T+CRVLGGD S+  EIE+R+  LQ TE GRA Q F++
Sbjct:   73 VEIVWSLPGKAAREFRRTSAKTVCRVLGGDLSIVQEIEKRHHTLQQTEGGRAAQAFML 130          
BLAST of mRNA_S-dermatodea_contig1036.263.1 vs. uniprot
Match: B5LWG0_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWG0_9PHYC)

HSP 1 Score: 73.6 bits (179), Expect = 4.220e-15
Identity = 35/73 (47.95%), Postives = 51/73 (69.86%), Query Frame = 1
Query:    1 IEIIWLLPARAAKEFRRQSAHTICRVLGGDTSLCDEIEQRYARLQSTEEGRAYQNFVMDQGPAKKTRSEAPFW 219
            + I++LLP + A++FRR+SA  ICR+LGGD +L  EIEQ    LQST EGRA Q F+++ G ++ +R+    W
Sbjct:    4 VGIVFLLPGKIARDFRRKSAAKICRILGGDLTLISEIEQHRNALQSTSEGRATQAFLLNTGSSENSRNMQECW 76          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1036.263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JDQ1_9PHAE9.170e-3583.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K200_9PHAE3.670e-3079.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
Q8QN79_ESV1K4.920e-3079.45EsV-1-211 n=2 Tax=root TaxID=1 RepID=Q8QN79_ESV1K[more]
A0A6H5L5N7_9PHAE1.380e-2880.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LPL9_ECTSI2.000e-2371.23EsV-1-210 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
Q8QN80_ESV1K2.760e-2371.23EsV-1-210 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
B5LW93_9PHYC1.160e-1865.15Uncharacterized protein n=1 Tax=Feldmannia species... [more]
A0A6H5JW74_9PHAE3.830e-1663.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YZ27_9STRA7.170e-1660.34Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
B5LWG0_9PHYC4.220e-1547.95Uncharacterized protein n=1 Tax=Feldmannia species... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1036contigS-dermatodea_contig1036:7999..8217 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.8
Seed ortholog evalue6.8e-20
Seed eggNOG ortholog2880.D8LPL9
EggNOG OGs2EUDG@1,2SWJG@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size219
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924153.3944533-CDS-S-dermatodea_contig1036:7998..82171622924153.3944533-CDS-S-dermatodea_contig1036:7998..8217Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1036 7999..8217 +
1694079054.1510189-CDS-S-dermatodea_contig1036:7998..82171694079054.1510189-CDS-S-dermatodea_contig1036:7998..8217Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1036 7999..8217 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1036.263.1prot_S-dermatodea_contig1036.263.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1036 7999..8217 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1036.263.1

>prot_S-dermatodea_contig1036.263.1 ID=prot_S-dermatodea_contig1036.263.1|Name=mRNA_S-dermatodea_contig1036.263.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=73bp
IEIIWLLPARAAKEFRRQSAHTICRVLGGDTSLCDEIEQRYARLQSTEEG
RAYQNFVMDQGPAKKTRSEAPFW
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mRNA from alignment at S-dermatodea_contig1036:7999..8217+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1036.263.1 ID=mRNA_S-dermatodea_contig1036.263.1|Name=mRNA_S-dermatodea_contig1036.263.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=219bp|location=Sequence derived from alignment at S-dermatodea_contig1036:7999..8217+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATTGAAATCATCTGGCTGCTGCCCGCGCGCGCCGCCAAGGAGTTCCGACG CCAATCGGCCCACACGATATGTAGAGTGCTCGGCGGCGACACGAGTCTAT GCGATGAAATCGAACAACGCTATGCTCGCCTACAGAGCACGGAGGAAGGT AGGGCCTACCAAAACTTTGTGATGGACCAGGGCCCCGCCAAGAAGACTCG GTCGGAAGCACCCTTTTGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1036:7999..8217+

>mRNA_S-dermatodea_contig1036.263.1 ID=mRNA_S-dermatodea_contig1036.263.1|Name=mRNA_S-dermatodea_contig1036.263.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at S-dermatodea_contig1036:7999..8217+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATTGAAATCATCTGGCTGCTGCCCGCGCGCGCCGCCAAGGAGTTCCGACG
CCAATCGGCCCACACGATATGTAGAGTGCTCGGCGGCGACACGAGTCTAT
GCGATGAAATCGAACAACGCTATGCTCGCCTACAGAGCACGGAGGAAGGT
AGGGCCTACCAAAACTTTGTGATGGACCAGGGCCCCGCCAAGAAGACTCG
GTCGGAAGCACCCTTTTGGATTGAAATCATCTGGCTGCTGCCCGCGCGCG
CCGCCAAGGAGTTCCGACGCCAATCGGCCCACACGATATGTAGAGTGCTC
GGCGGCGACACGAGTCTATGCGATGAAATCGAACAACGCTATGCTCGCCT
ACAGAGCACGGAGGAAGGTAGGGCCTACCAAAACTTTGTGATGGACCAGG
GCCCCGCCAAGAAGACTCGGTCGGAAGCACCCTTTTGG
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