mRNA_S-dermatodea_contig10346.252.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10346.252.1
Unique NamemRNA_S-dermatodea_contig10346.252.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10346.252.1 vs. uniprot
Match: D8LCG8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCG8_ECTSI)

HSP 1 Score: 411 bits (1056), Expect = 2.330e-131
Identity = 253/531 (47.65%), Postives = 312/531 (58.76%), Query Frame = 1 
Query:    1 AASEREALEQ-SHGLRSELKHAIRVARKTFGEGDRIESRWRRTTRLDKPRLDPEVWHPGRLVAVNKDGN-VDMVFEDGEQERLSGIPAKYVRLAP----------------------APSAPPRCTDHTLGHETPESPAPPEDVCSASRRKLAHIASAAKSIRSTWEEPVTMDQELARLRILWEEKMRGRPEWRASFPAAHFEATKMISIG-DVKAGWGGAQQR---------------RPLRKRRQARDTARCRRG-----------QPSRVCGLHDQLAVD----------TTRETLQQDTRGQSCATNGRADIITT------------CSALAQAQSNLVKTAMAYDRCVVGVRDCLDRGVAAFHVAQTYSEQQRAFDESTAAIGPAQPARAGYTNWRGRPIVGLQNATLDVAEAMDAWATQWAAARN---ETVGS----QETNKVAK----------APPFMWGGLPLASTIAGHSAKLLARVPEIEGWYGPGFPVRRNPFFLTYPIDDRPVTPRNALVRAYVNGEM 1323
            AA  +E LEQ S GL  E+K A++VA  TF EGDR+ESRWRR TRLDK ++DP  WHPGR+V  +KDG  VD+VFEDG+ ERLSGI  K+VRLAP                      A  +  R +        P S    E VCSASR +LAHIA A K +R TWE+PV + QE+ARLR+L E KMRGRPEWR SFP   F ATK +  G    A  GG + R               R L+ +    D +R R              P+ V  +H +  +D          +T +   ++T  +S      +                  +AL +AQ+ LV  A+AYDR V G RDCLDRG AAF +A+TYSEQQ+AF+ESTA +GPAQPARAGYT+WRG P+VGLQ+ATLDV EAMDAWA +WAA +    +T G      E   V K          APPF+W G PL STI G SAKL+A  PE++GWYGPGFP+ RNPFFL YP+DDRPVTPR+ALVRA+VNGE+
Sbjct:  322 AARHQETLEQQSRGLHLEMKRAMKVATTTFREGDRVESRWRRPTRLDKAKIDPGAWHPGRVVQSHKDGGRVDVVFEDGDGERLSGISTKHVRLAPPXXXXXXXXXXXXXXXXXXVMAAGVSGRRNSCDRRPSCVPTSAPTDELVCSASRGELAHIACATKFLRCTWEDPVPISQEMARLRMLEERKMRGRPEWRGSFPLVDFSATKRLPFGAGGMARTGGRRARNAAASAATAAVATRDRQLQAQGTVHDDSRTRLRTVQWSPSSSLKMPTTVPQVHREENIDRDQGQGDRCTSTDDNTVKETNARSAGKRRSSXXXXXXXXXXXXXXXXGATALLEAQAKLVSAALAYDRYVAGARDCLDRGCAAFRLARTYSEQQKAFEESTAILGPAQPARAGYTDWRGSPVVGLQSATLDVVEAMDAWAAEWAADKGGKPDTGGGGNAFAEEGVVLKDGAVAEVAVAAPPFLWEGSPLVSTIIGQSAKLVAGAPELKGWYGPGFPIERNPFFLAYPVDDRPVTPRSALVRAWVNGEV 852
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BLAST of mRNA_S-dermatodea_contig10346.252.1 vs. uniprot
Match: A0A6H5JB67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB67_9PHAE)

HSP 1 Score: 405 bits (1041), Expect = 5.710e-130
Identity = 253/544 (46.51%), Postives = 304/544 (55.88%), Query Frame = 1 
Query:    1 AASEREALEQ-SHGLRSELKHAIRVARKTFGEGDRIESRWRRTTRLDKPRLDPEVWHPGRLVAVNKDGN-VDMVFEDGEQERLSGIPAKYVRLAP---------------------APSAPPRCTDHTLGHETPESPAPPEDVCSASRRKLAHIASAAKSIRSTWEEPVTMDQELARLRILWEEKMRGRPEWRASFPAAHFEATKMISIGDVKAGWGGAQQRRPLRKRR------------------QARDTAR------CRRGQPSRVCGLHDQLAVDTTRETLQQDT---RGQSCA---------TNGRA--------------------------DIITTCSALAQAQSNLVKTAMAYDRCVVGVRDCLDRGVAAFHVAQTYSEQQRAFDESTAAIGPAQPARAGYTNWRGRPIVGLQNATLDVAEAMDAWATQWAAARNETV------------------GSQETNKVAKAPPFMWGGLPLASTIAGHSAKLLARVPEIEGWYGPGFPVRRNPFFLTYPIDDRPVTPRNALVRAYVNGEM 1323
            AA  +E LEQ S GL  E+K A++VA  TF EGDR+ESRWRR TRLDK ++DP  WHPGR+V  +K G+ VD+VFEDG+ ERLSGI  K+VRLAP                     A     R            +PAP E VCSA RR+LAHIA A KS+R TWE PV + QE+ARLR+L E KMR RPEWR SFP   F ATK +  G       G   R  +RK +                  QA+ T R       R  Q S    L   + V   +     D    +G  C          TN R+                                +AL  AQ+ LV  A+AYDRCV GVRDCLDRG AAF +A+TYSEQQ+AF+ESTA +GPAQPARAGY +WRG P+VGLQ+ATLDV EAMD WA +WA A+                      G+ E   VA APPF+W G PL ST+ G SAKL+A  PE++ WYGPGFP+ RNPFFL YP+DDRPVTPR+ALVRA+VNGE+
Sbjct:  240 AARHQETLEQQSQGLHLEMKRAMKVATTTFREGDRVESRWRRPTRLDKAKIDPGAWHPGRVVQSHKGGDRVDVVFEDGDGERLSGISTKHVRLAPPXXXXXXXXLVSSGRDDDYVTAAGVTGRRNSCDRRPSCAPTPAPTELVCSAIRRELAHIACATKSLRCTWEVPVPISQEMARLRMLEERKMRSRPEWRGSFPLVDFSATKRLPFG------AGGMARTVVRKVKNTAASAVSAVLATRDHQLQAQSTVRDDSRTRLRTVQSSPSSSLKMPMTVPQVQRDENDDRDLGQGDRCTSTDDNTVKETNARSAGKRRSSXXXXXXXXXXXXXXXXXXXXXXXXXTALLAAQAKLVSAAVAYDRCVAGVRDCLDRGCAAFRLARTYSEQQKAFEESTATLGPAQPARAGYKDWRGSPVVGLQSATLDVVEAMDDWAAEWAVAKGGKTDAGGGDNAFAEEGVVLKDGAVEEVAVA-APPFLWEGSPLVSTVIGQSAKLVAGAPELKEWYGPGFPIERNPFFLAYPVDDRPVTPRSALVRAWVNGEV 776
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10346.252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCG8_ECTSI2.330e-13147.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JB67_9PHAE5.710e-13046.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10346contigS-dermatodea_contig10346:3678..5774 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score420.6
Seed ortholog evalue1e-114
Seed eggNOG ortholog2880.D8LCG8
EggNOG OGs2CYV0@1,2S6K7@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_005000.1
Exons2
Model size1503
Cds size1503
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924152.6652112-CDS-S-dermatodea_contig10346:3677..49971622924152.6652112-CDS-S-dermatodea_contig10346:3677..4997Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10346 3678..4997 +
1694079053.6289196-CDS-S-dermatodea_contig10346:3677..49971694079053.6289196-CDS-S-dermatodea_contig10346:3677..4997Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10346 3678..4997 +
1622924152.6789281-CDS-S-dermatodea_contig10346:5591..57741622924152.6789281-CDS-S-dermatodea_contig10346:5591..5774Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10346 5592..5774 +
1694079053.6376593-CDS-S-dermatodea_contig10346:5591..57741694079053.6376593-CDS-S-dermatodea_contig10346:5591..5774Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10346 5592..5774 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10346.252.1prot_S-dermatodea_contig10346.252.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10346 3678..5774 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10346.252.1

>prot_S-dermatodea_contig10346.252.1 ID=prot_S-dermatodea_contig10346.252.1|Name=mRNA_S-dermatodea_contig10346.252.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=501bp
AASEREALEQSHGLRSELKHAIRVARKTFGEGDRIESRWRRTTRLDKPRL
DPEVWHPGRLVAVNKDGNVDMVFEDGEQERLSGIPAKYVRLAPAPSAPPR
CTDHTLGHETPESPAPPEDVCSASRRKLAHIASAAKSIRSTWEEPVTMDQ
ELARLRILWEEKMRGRPEWRASFPAAHFEATKMISIGDVKAGWGGAQQRR
PLRKRRQARDTARCRRGQPSRVCGLHDQLAVDTTRETLQQDTRGQSCATN
GRADIITTCSALAQAQSNLVKTAMAYDRCVVGVRDCLDRGVAAFHVAQTY
SEQQRAFDESTAAIGPAQPARAGYTNWRGRPIVGLQNATLDVAEAMDAWA
TQWAAARNETVGSQETNKVAKAPPFMWGGLPLASTIAGHSAKLLARVPEI
EGWYGPGFPVRRNPFFLTYPIDDRPVTPRNALVRAYVNGEMVTTISPMIL
QEREKEELALAAVLGRQAAAPSWWPATRGSMSEAHYTRVRRAEKILLRED
S
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mRNA from alignment at S-dermatodea_contig10346:3678..5774+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10346.252.1 ID=mRNA_S-dermatodea_contig10346.252.1|Name=mRNA_S-dermatodea_contig10346.252.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2097bp|location=Sequence derived from alignment at S-dermatodea_contig10346:3678..5774+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGGCATCCGAGCGAGAGGCGCTGGAGCAGTCGCACGGTTTACGTTCGGA
GCTTAAGCACGCTATTCGGGTGGCACGCAAGACTTTCGGAGAGGGTGACA
GGATCGAGAGCCGCTGGCGCCGCACCACACGGCTGGACAAACCTCGGCTT
GATCCCGAGGTGTGGCACCCCGGCAGGCTCGTCGCCGTGAACAAGGACGG
CAACGTAGATATGGTTTTCGAGGACGGAGAACAGGAGCGCTTGAGCGGCA
TACCTGCCAAGTACGTTCGTCTGGCTCCGGCACCGTCAGCGCCTCCACGC
TGTACGGACCACACGCTCGGACATGAAACCCCCGAGTCGCCGGCACCCCC
GGAAGATGTATGCTCGGCCAGTCGTCGGAAGTTGGCCCACATCGCGTCTG
CGGCTAAATCTATTCGCTCTACCTGGGAGGAACCAGTGACTATGGACCAA
GAGCTGGCTCGGCTAAGGATATTGTGGGAAGAGAAGATGCGAGGCAGACC
TGAATGGCGGGCGTCGTTCCCAGCCGCTCACTTCGAGGCCACCAAAATGA
TATCAATCGGTGACGTGAAGGCAGGATGGGGGGGGGCTCAGCAACGAAGG
CCATTGAGGAAGCGACGTCAAGCACGGGACACCGCTCGATGTAGACGTGG
GCAACCGTCGCGAGTATGCGGCCTTCACGACCAGCTCGCGGTAGACACGA
CCAGGGAAACGCTGCAACAGGACACCCGCGGGCAAAGCTGCGCGACAAAT
GGGAGAGCCGATATAATTACGACCTGTTCGGCGCTGGCGCAGGCGCAGTC
TAACCTTGTCAAAACAGCCATGGCCTACGACAGGTGCGTCGTCGGCGTGC
GTGATTGCCTGGATCGCGGGGTGGCCGCTTTCCACGTCGCGCAAACGTAC
TCTGAGCAGCAGAGAGCGTTCGACGAAAGCACTGCGGCTATAGGTCCAGC
GCAGCCAGCCCGAGCCGGTTACACCAACTGGCGCGGCAGGCCTATCGTGG
GGCTCCAAAACGCGACGCTGGACGTCGCAGAGGCGATGGATGCGTGGGCT
ACTCAGTGGGCGGCGGCCAGAAACGAGACCGTCGGCTCACAGGAGACGAA
CAAGGTCGCCAAGGCCCCTCCTTTTATGTGGGGGGGCTTACCTCTTGCGT
CTACGATCGCCGGGCACAGTGCCAAGCTGCTTGCGCGGGTGCCGGAAATT
GAGGGCTGGTACGGCCCTGGGTTCCCTGTTCGGCGGAACCCGTTTTTCCT
TACGTACCCGATCGACGACCGACCGGTGACGCCCCGCAACGCCCTCGTTC
GAGCTTACGTGAATGGCGAGGTGGGTGGATGAGTGTGCGTATAGATTTGA
GCGTGCACCTTCGAAAACGTATTACTTCGAAGTAGTACTATGTGGAATTG
CAAGAGTGTGAGTGCACACCAGACACGCGATAGGATGTACAAAAAGCGAG
CGCCTAGGCTGCTCATCTTGGCGGCCAGTCGCGACAAAGCCCGTCGGTTT
CGTTGGTGACGTGGCGCTGGTGGAGACACCAACCGGGCCATTTCTACGAT
TAATTACGTCTTCGCTCGTCTTTGAAGCACAGCCTTGTAACGGAAAATTG
CCTATATCAAAACTACAAGTGTAATTGGTACGAATTACGCTTGTGAAATA
CTCCCTTGTGAGAGAACTGATCCAGTAAATTACGAGCGTGCTCCGTCAGT
TTGGCATACACGCTCCACCCAAGCGGCTGTACACGACGTTTCAAACGGGC
TCTCACAACCCTGCCAACTACGAGCCAGAAAACAGCGCCAAGCAGGCTCA
CAATTATTTACACAATTAGTTAGAGCTATATAATAATTGTTTTTCGCCTC
AGGTCAAATCTTATACCCCGCTCTCTCCTCCCCACTACTGCTTCTACCCA
ACTCACACCACCAGATGGTAACGACAATCAGCCCCATGATTCTGCAAGAG
AGAGAGAAGGAGGAATTAGCCCTCGCGGCTGTTCTTGGCCGACAGGCGGC
CGCGCCTTCGTGGTGGCCGGCGACCAGAGGATCAATGAGCGAGGCACACT
ACACTAGGGTGCGACGGGCGGAGAAAATTCTCCTCCGCGAGGACAGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig10346:3678..5774+

>mRNA_S-dermatodea_contig10346.252.1 ID=mRNA_S-dermatodea_contig10346.252.1|Name=mRNA_S-dermatodea_contig10346.252.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=3006bp|location=Sequence derived from alignment at S-dermatodea_contig10346:3678..5774+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGGCATCCGAGCGAGAGGCGCTGGAGCAGTCGCACGGTTTACGTTCGGA
GCTTAAGCACGCTATTCGGGTGGCACGCAAGACTTTCGGAGAGGGTGACA
GGATCGAGAGCCGCTGGCGCCGCACCACACGGCTGGACAAACCTCGGCTT
GATCCCGAGGTGTGGCACCCCGGCAGGCTCGTCGCCGTGAACAAGGACGG
CAACGTAGATATGGTTTTCGAGGACGGAGAACAGGAGCGCTTGAGCGGCA
TACCTGCCAAGTACGTTCGTCTGGCTCCGGCACCGTCAGCGCCTCCACGC
TGTACGGACCACACGCTCGGACATGAAACCCCCGAGTCGCCGGCACCCCC
GGAAGATGTATGCTCGGCCAGTCGTCGGAAGTTGGCCCACATCGCGTCTG
CGGCTAAATCTATTCGCTCTACCTGGGAGGAACCAGTGACTATGGACCAA
GAGCTGGCTCGGCTAAGGATATTGTGGGAAGAGAAGATGCGAGGCAGACC
TGAATGGCGGGCGTCGTTCCCAGCCGCTCACTTCGAGGCCACCAAAATGA
TATCAATCGGTGACGTGAAGGCAGGATGGGGGGGGGCTCAGCAACGAAGG
CCATTGAGGAAGCGACGTCAAGCACGGGACACCGCTCGATGTAGACGTGG
GCAACCGTCGCGAGTATGCGGCCTTCACGACCAGCTCGCGGTAGACACGA
CCAGGGAAACGCTGCAACAGGACACCCGCGGGCAAAGCTGCGCGACAAAT
GGGAGAGCCGATATAATTACGACCTGTTCGGCGCTGGCGCAGGCGCAGTC
TAACCTTGTCAAAACAGCCATGGCCTACGACAGGTGCGTCGTCGGCGTGC
GTGATTGCCTGGATCGCGGGGTGGCCGCTTTCCACGTCGCGCAAACGTAC
TCTGAGCAGCAGAGAGCGTTCGACGAAAGCACTGCGGCTATAGGTCCAGC
GCAGCCAGCCCGAGCCGGTTACACCAACTGGCGCGGCAGGCCTATCGTGG
GGCTCCAAAACGCGACGCTGGACGTCGCAGAGGCGATGGATGCGTGGGCT
ACTCAGTGGGCGGCGGCCAGAAACGAGACCGTCGGCTCACAGGAGACGAA
CAAGGTCGCCAAGGCCCCTCCTTTTATGTGGGGGGGCTTACCTCTTGCGT
CTACGATCGCCGGGCACAGTGCCAAGCTGCTTGCGCGGGTGCCGGAAATT
GAGGGCTGGTACGGCCCTGGGTTCCCTGTTCGGCGGAACCCGTTTTTCCT
TACGTACCCGATCGACGACCGACCGGTGACGCCCCGCAACGCCCTCGTTC
GAGCTTACGTGAATGGCGAGGCGGCATCCGAGCGAGAGGCGCTGGAGCAG
TCGCACGGTTTACGTTCGGAGCTTAAGCACGCTATTCGGGTGGCACGCAA
GACTTTCGGAGAGGGTGACAGGATCGAGAGCCGCTGGCGCCGCACCACAC
GGCTGGACAAACCTCGGCTTGATCCCGAGGTGTGGCACCCCGGCAGGCTC
GTCGCCGTGAACAAGGACGGCAACGTAGATATGGTTTTCGAGGACGGAGA
ACAGGAGCGCTTGAGCGGCATACCTGCCAAGTACGTTCGTCTGGCTCCGG
CACCGTCAGCGCCTCCACGCTGTACGGACCACACGCTCGGACATGAAACC
CCCGAGTCGCCGGCACCCCCGGAAGATGTATGCTCGGCCAGTCGTCGGAA
GTTGGCCCACATCGCGTCTGCGGCTAAATCTATTCGCTCTACCTGGGAGG
AACCAGTGACTATGGACCAAGAGCTGGCTCGGCTAAGGATATTGTGGGAA
GAGAAGATGCGAGGCAGACCTGAATGGCGGGCGTCGTTCCCAGCCGCTCA
CTTCGAGGCCACCAAAATGATATCAATCGGTGACGTGAAGGCAGGATGGG
GGGGGGCTCAGCAACGAAGGCCATTGAGGAAGCGACGTCAAGCACGGGAC
ACCGCTCGATGTAGACGTGGGCAACCGTCGCGAGTATGCGGCCTTCACGA
CCAGCTCGCGGTAGACACGACCAGGGAAACGCTGCAACAGGACACCCGCG
GGCAAAGCTGCGCGACAAATGGGAGAGCCGATATAATTACGACCTGTTCG
GCGCTGGCGCAGGCGCAGTCTAACCTTGTCAAAACAGCCATGGCCTACGA
CAGGTGCGTCGTCGGCGTGCGTGATTGCCTGGATCGCGGGGTGGCCGCTT
TCCACGTCGCGCAAACGTACTCTGAGCAGCAGAGAGCGTTCGACGAAAGC
ACTGCGGCTATAGGTCCAGCGCAGCCAGCCCGAGCCGGTTACACCAACTG
GCGCGGCAGGCCTATCGTGGGGCTCCAAAACGCGACGCTGGACGTCGCAG
AGGCGATGGATGCGTGGGCTACTCAGTGGGCGGCGGCCAGAAACGAGACC
GTCGGCTCACAGGAGACGAACAAGGTCGCCAAGGCCCCTCCTTTTATGTG
GGGGGGCTTACCTCTTGCGTCTACGATCGCCGGGCACAGTGCCAAGCTGC
TTGCGCGGGTGCCGGAAATTGAGGGCTGGTACGGCCCTGGGTTCCCTGTT
CGGCGGAACCCGTTTTTCCTTACGTACCCGATCGACGACCGACCGGTGAC
GCCCCGCAACGCCCTCGTTCGAGCTTACGTGAATGGCGAGATGGTAACGA
CAATCAGCCCCATGATTCTGCAAGAGAGAGAGAAGGAGGAATTAGCCCTC
GCGGCTGTTCTTGGCCGACAGGCGGCCGCGCCTTCGTGGTGGCCGGCGAC
CAGAGGATCAATGAGCGAGGCACACTACACTAGGGTGCGACGGGCGGAGA
AAATTCTCCTCCGCGAGGACAGCATGGTAACGACAATCAGCCCCATGATT
CTGCAAGAGAGAGAGAAGGAGGAATTAGCCCTCGCGGCTGTTCTTGGCCG
ACAGGCGGCCGCGCCTTCGTGGTGGCCGGCGACCAGAGGATCAATGAGCG
AGGCACACTACACTAGGGTGCGACGGGCGGAGAAAATTCTCCTCCGCGAG
GACAGC
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