mRNA_S-dermatodea_contig10346.251.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
|
Overview
Homology
BLAST of mRNA_S-dermatodea_contig10346.251.1 vs. uniprot
Match: A0A6H5J9B2_9PHAE (tRNA-5-taurinomethyluridine 2-sulfurtransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9B2_9PHAE) HSP 1 Score: 263 bits (671), Expect = 3.560e-77 Identity = 205/475 (43.16%), Postives = 238/475 (50.11%), Query Frame = 1
Query: 1 MKLDALLVSA-FLAGTADCFAPL-SPAAREVAGRVSSQHGVVAGRLSPRPSDAAQPRRKPSRKRXXXXASRLESTATADGAASDGTSSASRL---------PHRLQEVVDRLDREPDLVSKSKLLVELGDAFALTGAAVLP----------RDSDSDGGTTWRSQKVPGCVSEVHVAVSVVTEERCPPGGG---------------------VVSIRGTADARLSRGILALLAEGLEGETVDTVLGLRGKALAAAVGLRAGLTDSRINGLGNVLGVIQNQVEEH------------------------LALALGAAPAAPTDHVAPGVQGA--------------------------------------------------------------------------ALDQDRSWGSDASDWFPLPGAEDEVAMLLSGGVDSSVALRLLQDEGYRIRAFYLKIWLEDELAHLGECPW 1005
MK+DALLVSA LAGTA+CF P SP + +++ AA P P+R R + ++S DGAAS + + RL P RLQ VD L ++ DL +KSKLLVELGDAFA T AAVLP ++ +DG W + KVPGCVSEV+VAV V E P VVSIRGTADARLSRG+LALLA GL+G++ TVL LRGK LAAAVG+RAGLT SRINGLGNVLGVIQ+QV H L GA P A T+ A V+ A LD RSWG DAS W+PLPGAE+EVAMLLSGGVDSSVA+RLLQD+GY+IRAFYLKIWLEDELAHL ECPW
Sbjct: 1 MKIDALLVSAALLAGTAECFTPHPSPLPKRFQNHAATR--------------AALP---PTRSRKRPRTAWMDS----DGAASAASVTDGRLVPXXXXXGLPPRLQAAVDMLGQDTDLKTKSKLLVELGDAFANTDAAVLPVVVPSDSTAVNEASADG---WHAHKVPGCVSEVYVAVRV---EESPXXXXXXXXXXXXXXXXXXXXXXXXXVVSIRGTADARLSRGLLALLALGLQGQSARTVLSLRGKDLAAAVGMRAGLTSSRINGLGNVLGVIQDQVRGHFRRAAAAXXXXXGAADTLRPTLVDLTAVQGATPRAATN--AGKVEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGLDPSRSWGDDASSWYPLPGAENEVAMLLSGGVDSSVAMRLLQDQGYKIRAFYLKIWLEDELAHLNECPW 446
BLAST of mRNA_S-dermatodea_contig10346.251.1 vs. uniprot
Match: A0A0G4FIA7_VITBC (tRNA-5-taurinomethyluridine 2-sulfurtransferase n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FIA7_VITBC) HSP 1 Score: 147 bits (370), Expect = 6.180e-36 Identity = 108/271 (39.85%), Postives = 146/271 (53.87%), Query Frame = 1
Query: 205 RLESTATADGAASDGTSSASRLPHRLQEVVDRLDREPDLVSKSKLLVELGDAFALTGAAVLPRDSDSDGGTT----WRSQKVPGCVSEVHVAVSVVTEERCPPGGGVVSIRGTADARLSRGILALLAEGLEGETVDTVLGLRGKALAAAVGLRAGLTDSRINGLGNVLGVIQNQVEEHLALALGAAPAAPTDHVAPGVQGAALDQDRSWGSDASDWFPLPGAEDEVAMLLSGGVDSSVALRLLQDEGYRIRAFYLKIWLEDELAHLGECPW 1005
RL A+ D AS TS +LP + + ++ L +P + LV LGD L R + GG R++KVPGCV+ V V ++ + V + GTADAR+S+G++AL+AE LEG VL + A A + + + LT R+NGL +++ IQ Q+ +A +G + T A G +G L F L A EVA+LLSGGVDSSVA RLL D G R+RAFYL+IWLEDEL+HLGECPW
Sbjct: 13 RLFDLASHDDDASTSTSKDPQLPLQAEGALESLRAQPSQKDRFLHLVRLGDE--------LTRRNQQPGGLPDGFEQRAEKVPGCVATVKVLATLDDD--------AVKVYGTADARVSQGLVALVAEALEGLPAPRVLAVPPDAFAGSTAMASFLTPGRLNGLRSLIMTIQRQIASRVA-GVGEEQESETSASA-GSEGLPLGPPS---------FVLSEAAGEVAVLLSGGVDSSVAARLLVDRGERVRAFYLRIWLEDELSHLGECPW 256
BLAST of mRNA_S-dermatodea_contig10346.251.1 vs. uniprot
Match: W7TJQ7_9STRA (tRNA-5-taurinomethyluridine 2-sulfurtransferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJQ7_9STRA) HSP 1 Score: 141 bits (355), Expect = 1.610e-33 Identity = 115/301 (38.21%), Postives = 154/301 (51.16%), Query Frame = 1
Query: 244 DGTSSASRLPHRLQE---VVDRLDREPDLVSKSKLLVELGDAFALTGAAVLPRDSDSDGGTTWRSQKVPGCVSEVHVAVSVVTEERCPPGGGVVSIRGTADARLSRGILALLAEGLEGETVDTVLGLRGKALAAAVGLRAGLTDS---RINGLGNVLGVIQNQV--------------EEHLALALGAAPA-------APTDHVAPGVQGAALDQDRSWGSDASDWFPLPGA---------EDEVAMLLSGGVDSSVALRLLQDEGYRIRAFYLKIWLEDELAHLGECPW------VSAAC 1020
D TS LP L+ ++ L + + ++S L+ LGD +A A R S GG ++VPGCVS VH+ V ++ G V + G +DARLS G++AL+A+GL GE+ +T+L L L A+GL G+ R NGL N++ +Q++V E A+ AAPA A T A V A+D + + A FP P +EVA+LLSGGVDSSVAL LLQ +GY+ AFYLKIWLEDELAHL +CPW SA C
Sbjct: 132 DPTSPLPILPPGLENFRRLLSSLPTDDESKAQSLYLISLGDQYA----AATARSIASRGG-----RRVPGCVSVVHMTVRFSSD------GSAVHVDGISDARLSYGLVALVAQGLTGESPETILSLEPTTLPKALGLTGGMMQQAPGRHNGLANIVQTVQDEVLARLHESRVPDFQGERGAREAILAAPAERPMLTTAGTKEFAVPV---AVDPSHAAPTPAIS-FPTPAQLPLLTHSFPSEEVAVLLSGGVDSSVALHLLQQQGYKPHAFYLKIWLEDELAHLNQCPWEEDWSFASAVC 413
BLAST of mRNA_S-dermatodea_contig10346.251.1 vs. uniprot
Match: A0A7S3SLJ8_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3SLJ8_EMIHU) HSP 1 Score: 129 bits (323), Expect = 1.940e-30 Identity = 90/210 (42.86%), Postives = 113/210 (53.81%), Query Frame = 1
Query: 433 KVPGCVSEVHVAVSVVTEERCPPGGGVVSIRGTADARLSRGILALLAEGLEGETVDTVLGLRGKALAAAVGLRAGLTDSRINGLGNVLGVIQNQVEEHLALALGAAPAAPTDHVAPGVQGA-------------ALDQDRSWGSDA----SDWFPLPGAEDEVAMLLSGGVDSSVALRLLQDEGYRIRAFYLKIWLEDELAHL--GECPW 1005
+V C S V V P G G + + G AD+RL+RG++ALL +GL GE +T+L L +A A GL L+ SR+NGLG ++ ++Q Q+E G A A D GV A A G +A L A +EVA+LLSGGVDSSVALRLL D G R RAFYL+IWLEDE AH+ GECPW
Sbjct: 80 RVSSCTSMVDVLAR-------PSGSGSLRLDGAADSRLARGLVALLVQGLRGERAETLLALDPAQVARAAGLVGALSPSRVNGLGAMIRLMQRQLEA------GVAAEAAADATPAGVASAXXXXXXXXXXXXXATTSGGEGGREAVLRAGSRGSLESAGEEVAVLLSGGVDSSVALRLLHDAGVRTRAFYLRIWLEDEDAHVASGECPW 276
BLAST of mRNA_S-dermatodea_contig10346.251.1 vs. uniprot
Match: A0A448YW36_9STRA (tRNA-5-taurinomethyluridine 2-sulfurtransferase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YW36_9STRA) HSP 1 Score: 130 bits (327), Expect = 7.470e-30 Identity = 85/191 (44.50%), Postives = 110/191 (57.59%), Query Frame = 1
Query: 433 KVPGCVSEVHVAVSVVTEERCPPGGGVVSIRGTADARLSRGILALLAEGLEGETVDTVLGLRGKALAAAVGLRAGLTDSRINGLGNVLGVIQNQVEEHLALALGAAPAAPTDHVAPGVQGAALDQDRSWGSDASDWFPLPGAEDEVAMLLSGGVDSSVALRLLQDEGYRIRAFYLKIWLEDELAHLGECPW 1005
+VPGCV+ V+V+ + + G VS+ G+ADA LSRG+LALLAE LE +T VL + LA A+G+R L R +GL ++L VIQ Q+ +DH D+ + P A+ VA+LLSGGVDSSVA RLL ++GY + FYLKIWLEDELAHLGECPW
Sbjct: 165 RVPGCVATVYVSARPKSGQG---GRDTVSLAGSADAILSRGLLALLAEHLEDKTPGEVLEMDPSGLAEALGVRLALGKGRNDGLASMLAVIQGQLGGERE----------SDHG---------DKCXXXXXXXXEISETPSAKPTVALLLSGGVDSSVAFRLLLEQGYEVVPFYLKIWLEDELAHLGECPW 333
BLAST of mRNA_S-dermatodea_contig10346.251.1 vs. uniprot
Match: A0A5J4Z0A3_PORPP (tRNA-5-taurinomethyluridine 2-sulfurtransferase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z0A3_PORPP) HSP 1 Score: 128 bits (321), Expect = 3.870e-29 Identity = 89/248 (35.89%), Postives = 132/248 (53.23%), Query Frame = 1
Query: 268 LPHRLQEVVDRLDREPDLVSKSKLLVELGDAFALTGAAVLPRDSDSDGGTTWRSQKVPGCVSEVHVAVSVVTEERCPPGGG--VVSIRGTADARLSRGILALLAEGLEGETVDTVLGLRGKALAAAVGLRAGLTDSRINGLGNVLGVIQNQVEEHLALALGAAPAAPTDHVAPGVQGAALDQDRSWGSDASDWFPLPGAEDEVAMLLSGGVDSSVALRLLQDEGYRIRAFYLKIWLEDELAHLGECPW 1005
+P L+ +L EPD ++ LLV+ D +L A+ L D + +VPGC S +V VV G + + G++DA+L+ G+L +LA+G+ +VD +L + A + GL LT SR NGL N++ +IQ Q+ E ++ V +++D S D +EVA+LLSGGVDSSVALRL+ ++GY++ FYLKIWL+DEL+HL ECPW
Sbjct: 58 VPAGLKRAAQQLSNEPDARARCALLVKWADENSLPQASRL---KDMPALHKSAATRVPGCTSVTYVQARVVAPSDPQKGESRQEIVLYGSSDAKLTTGLLRILADGMAQCSVDEILAMDVGEFARSAGLLDALTPSRNNGLRNIVQLIQQQLREETPDPSQVVRNGQASNMKSAVPLSSVD---STMDDILHGRYSGETREEVAVLLSGGVDSSVALRLVLEQGYKVVPFYLKIWLQDELSHLNECPW 299
BLAST of mRNA_S-dermatodea_contig10346.251.1 vs. uniprot
Match: A0A7S3EC80_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EC80_9RHOD) HSP 1 Score: 123 bits (309), Expect = 4.590e-29 Identity = 78/191 (40.84%), Postives = 104/191 (54.45%), Query Frame = 1
Query: 433 KVPGCVSEVHVAVSVVTEERCPPGGGVVSIRGTADARLSRGILALLAEGLEGETVDTVLGLRGKALAAAVGLRAGLTDSRINGLGNVLGVIQNQVEEHLALALGAAPAAPTDHVAPGVQGAALDQDRSWGSDASDWFPLPGAEDEVAMLLSGGVDSSVALRLLQDEGYRIRAFYLKIWLEDELAHLGECPW 1005
+VPGC S VHV + G +I+G +DA+L+ G++ +L+EGL G + +LG+ LA A L + ++ SR N NVL I Q +QG + +S S F G ++VA+LLSGGVDSSVALRLL ++GYR FYLKIWLEDEL+HLGECPW
Sbjct: 75 RVPGCTSIVHVKAVHDLD-------GKATIQGCSDAKLTAGLIRMLSEGLNGLDKEVILGMEFSELADATQLNSFMSSSRANAFSNVLKCIHTQ-----------------------LQGGTTGESQS--SSRPTTFVSEGQGEDVAVLLSGGVDSSVALRLLLEQGYRPTPFYLKIWLEDELSHLGECPW 233
BLAST of mRNA_S-dermatodea_contig10346.251.1 vs. uniprot
Match: A0A7S2RGY0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RGY0_9STRA) HSP 1 Score: 120 bits (302), Expect = 8.450e-29 Identity = 91/251 (36.25%), Postives = 127/251 (50.60%), Query Frame = 1
Query: 268 LPHRLQEVVDRLDREPDLVSKSKLLVELGDAFALTGAAVLPRDSDSDGGTTWRSQKVPGCVSEVHVAVSVVTEERCPPGGGVVSIRGTADARLSRGILALLAEGLEGETVDTVLGLRGKALAAAVGLRAGLTDSRINGLGNVLGVIQNQVEEHLALALGAAPAAPTDHVAP-GVQGAALDQDRSWGS-DASDWFPLP---------------GAEDEVAMLLSGGVDSSVALRLLQDEGYRIRAFYLKIWL 969
LP ++ + L P +++ LV LGD +A + A+ +Q+VPGCV+ VH + + P G +V + G+ADARLSRG+LA +A GLE V+ + L +A++AA G LT SR NGL +++ +Q Q++ G AP+ + P + AL R G W P G +EVA+LLSGGVDSSVAL L +GYR RAFYLKIWL
Sbjct: 4 LPEAMERLAGALREIPRQDERAQALVRLGDHWAASEPALAQAAE---------AQRVPGCVAVVHAGLQL-----SPDQGSIVQVVGSADARLSRGLLAFIAVGLEHARVEELETLDARAISAAAGFFQALTPSRTNGLASIVATLQEQLKAMRVN--GTAPSTVAEPEPPLRLLDTALQVVRQGGGVSGGAWAATPAPPARDLAQNVWTGSGGGEEVAVLLSGGVDSSVALELALQQGYRPRAFYLKIWL 238
BLAST of mRNA_S-dermatodea_contig10346.251.1 vs. uniprot
Match: A0A7S3EBW9_9RHOD (Hypothetical protein n=4 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EBW9_9RHOD) HSP 1 Score: 123 bits (309), Expect = 1.890e-28 Identity = 78/191 (40.84%), Postives = 104/191 (54.45%), Query Frame = 1
Query: 433 KVPGCVSEVHVAVSVVTEERCPPGGGVVSIRGTADARLSRGILALLAEGLEGETVDTVLGLRGKALAAAVGLRAGLTDSRINGLGNVLGVIQNQVEEHLALALGAAPAAPTDHVAPGVQGAALDQDRSWGSDASDWFPLPGAEDEVAMLLSGGVDSSVALRLLQDEGYRIRAFYLKIWLEDELAHLGECPW 1005
+VPGC S VHV + G +I+G +DA+L+ G++ +L+EGL G + +LG+ LA A L + ++ SR N NVL I Q +QG + +S S F G ++VA+LLSGGVDSSVALRLL ++GYR FYLKIWLEDEL+HLGECPW
Sbjct: 75 RVPGCTSIVHVKAVHDLD-------GKATIQGCSDAKLTAGLIRMLSEGLNGLDKEVILGMEFSELADATQLNSFMSSSRANAFSNVLKCIHTQ-----------------------LQGGTTGESQS--SSRPTTFVSEGQGEDVAVLLSGGVDSSVALRLLLEQGYRPTPFYLKIWLEDELSHLGECPW 233
BLAST of mRNA_S-dermatodea_contig10346.251.1 vs. uniprot
Match: A0A8J5XG89_DIALT (tRNA-5-taurinomethyluridine 2-sulfurtransferase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XG89_DIALT) HSP 1 Score: 124 bits (312), Expect = 6.760e-28 Identity = 94/270 (34.81%), Postives = 134/270 (49.63%), Query Frame = 1
Query: 268 LPHRLQEVVDRLDREPDLVSKSKLLVELGDAFALTGAAVLPRDSDSDGGTTWRSQKVPGCVSEVHVAVSVVTEERCPPGGGVVSIRGTADARLSRGILALLAEGLEGETVDTVLGLRGKALAAAVGLRAGLTDSRINGLGNVLGVIQNQVEEHLALALGAAPAAPTDHVAPGVQGAALDQD-------RSWGSDASDWFPLPGA-----------------EDEVAMLLSGGVDSSVALRLLQDEGYRIRAFYLKIWLEDELAHLGECPW 1005
+P RL E+ L PD +++ LV+LG + A R +D +++V GC S +V+ +V + R + G++DA LSRG+LAL+ +GL G + ++L L ++ L +T SRINGL N++ Q+E LA A AP +G A D RS +A+ P P A + VAMLLSGGVDSSVAL+LL +G +RAFYL++WL DELA L +CPW
Sbjct: 86 MPARLVELAQVLREAPDSRARALALVQLGASSA--------RCADGSAPPPAGAERVRGCASVTYVSATVDEQGRA-------QLAGSSDAALSRGLLALVVDGLHGASASSILALTSASIRQLAALDGSVTPSRINGLDNIVKSACAQIEAALADAPRXXXXXXARTRAPRARGDAAVADASVAPSGRSALDEATVALPAPPALRNAYWTDPGAASSARDSESVAMLLSGGVDSSVALQLLVQQGVPVRAFYLRVWLADELADLSDCPW 340 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10346.251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig10346.251.1 >prot_S-dermatodea_contig10346.251.1 ID=prot_S-dermatodea_contig10346.251.1|Name=mRNA_S-dermatodea_contig10346.251.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=341bp MKLDALLVSAFLAGTADCFAPLSPAAREVAGRVSSQHGVVAGRLSPRPSDback to top mRNA from alignment at S-dermatodea_contig10346:564..1586- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig10346.251.1 ID=mRNA_S-dermatodea_contig10346.251.1|Name=mRNA_S-dermatodea_contig10346.251.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1023bp|location=Sequence derived from alignment at S-dermatodea_contig10346:564..1586- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig10346:564..1586- >mRNA_S-dermatodea_contig10346.251.1 ID=mRNA_S-dermatodea_contig10346.251.1|Name=mRNA_S-dermatodea_contig10346.251.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2046bp|location=Sequence derived from alignment at S-dermatodea_contig10346:564..1586- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |