mRNA_S-dermatodea_contig10337.246.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10337.246.1
Unique NamemRNA_S-dermatodea_contig10337.246.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10337.246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10337contigS-dermatodea_contig10337:678..1014 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size337
Cds size327
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924152.23263-UTR-S-dermatodea_contig10337:677..6871622924152.23263-UTR-S-dermatodea_contig10337:677..687Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10337 678..687 +
1694079053.365656-UTR-S-dermatodea_contig10337:677..6871694079053.365656-UTR-S-dermatodea_contig10337:677..687Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10337 678..687 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924152.2439597-CDS-S-dermatodea_contig10337:687..10141622924152.2439597-CDS-S-dermatodea_contig10337:687..1014Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10337 688..1014 +
1694079053.3735797-CDS-S-dermatodea_contig10337:687..10141694079053.3735797-CDS-S-dermatodea_contig10337:687..1014Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10337 688..1014 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10337.246.1prot_S-dermatodea_contig10337.246.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10337 688..1014 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10337.246.1

>prot_S-dermatodea_contig10337.246.1 ID=prot_S-dermatodea_contig10337.246.1|Name=mRNA_S-dermatodea_contig10337.246.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=109bp
MPEIRAAGASILRAFTTTPPLSPPSLPPPPSPTGDENPAPPAATASPPTP
SLLESLQACGGRPEAIRLLASLDLFGEKVPGSRASGKSGSDGNDRGDRGA
RGSGKRREN
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mRNA from alignment at S-dermatodea_contig10337:678..1014+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10337.246.1 ID=mRNA_S-dermatodea_contig10337.246.1|Name=mRNA_S-dermatodea_contig10337.246.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=337bp|location=Sequence derived from alignment at S-dermatodea_contig10337:678..1014+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCGTCCAAGATGCCGGAGATACGAGCAGCCGGAGCATCGATCCTCCGAG
CGTTCACCACGACCCCGCCACTGTCGCCACCGTCGCTGCCTCCTCCGCCC
TCCCCGACCGGCGACGAAAACCCTGCCCCCCCCGCCGCCACCGCTTCTCC
CCCCACTCCGTCCTTGCTGGAGAGCCTGCAAGCGTGCGGGGGGCGCCCGG
AAGCGATCCGCCTCCTCGCCTCCCTTGATCTCTTCGGGGAGAAAGTACCC
GGCAGCAGGGCGTCTGGGAAAAGCGGTAGCGATGGTAACGACCGCGGCGA
TCGCGGCGCGCGCGGCAGCGGCAAGCGGCGGGAGAAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig10337:678..1014+

>mRNA_S-dermatodea_contig10337.246.1 ID=mRNA_S-dermatodea_contig10337.246.1|Name=mRNA_S-dermatodea_contig10337.246.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at S-dermatodea_contig10337:678..1014+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCGGAGATACGAGCAGCCGGAGCATCGATCCTCCGAGCGTTCACCAC
GACCCCGCCACTGTCGCCACCGTCGCTGCCTCCTCCGCCCTCCCCGACCG
GCGACGAAAACCCTGCCCCCCCCGCCGCCACCGCTTCTCCCCCCACTCCG
TCCTTGCTGGAGAGCCTGCAAGCGTGCGGGGGGCGCCCGGAAGCGATCCG
CCTCCTCGCCTCCCTTGATCTCTTCGGGGAGAAAGTACCCGGCAGCAGGG
CGTCTGGGAAAAGCGGTAGCGATGGTAACGACCGCGGCGATCGCGGCGCG
CGCGGCAGCGGCAAGCGGCGGGAGAACATGCCGGAGATACGAGCAGCCGG
AGCATCGATCCTCCGAGCGTTCACCACGACCCCGCCACTGTCGCCACCGT
CGCTGCCTCCTCCGCCCTCCCCGACCGGCGACGAAAACCCTGCCCCCCCC
GCCGCCACCGCTTCTCCCCCCACTCCGTCCTTGCTGGAGAGCCTGCAAGC
GTGCGGGGGGCGCCCGGAAGCGATCCGCCTCCTCGCCTCCCTTGATCTCT
TCGGGGAGAAAGTACCCGGCAGCAGGGCGTCTGGGAAAAGCGGTAGCGAT
GGTAACGACCGCGGCGATCGCGGCGCGCGCGGCAGCGGCAAGCGGCGGGA
GAAC
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