mRNA_S-dermatodea_contig10335.245.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10335.245.1
Unique NamemRNA_S-dermatodea_contig10335.245.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig10335.245.1 vs. uniprot
Match: A0A6H5LCB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCB0_9PHAE)

HSP 1 Score: 341 bits (875), Expect = 7.030e-106
Identity = 190/344 (55.23%), Postives = 231/344 (67.15%), Query Frame = 1 
Query:    1 TWHSPYALADYYVMHRKEREVLRDYLRFLRALLGVSRETVRDIRIKDPSNREHMRRFPENVRRLWEAEPSTLAGTMDPEVIFRMGDDTRSCMGIRRSCSAQNRALLGYLLQGNVRLLGVHSPSGRMEARAVLRLLLRSDSMAPALFMDSIYYASSPDTALEQQVVAEAQSVSDALGVPLYRAGDRV----PADGELS-------------GAWEE-------EDDKHWEQ-----------------GGSSFGGGMTVNI----------------------------DASKMCELVEVDGLSAWVYSDGAVGTAHNPGVVHRD-SYPGSPRTIVLAELEYAQK 822
            TW SPYALADYYVMHRK+ EVL+ Y+RFL ALLG+S ETVRDIRI+DPSN EHM+ FPE+VRR W A+P TLAGT+DP+VIFRMGDDTRSCMGIRRSCSAQNRAL+GYLLQGN RL+GV S SGRMEARAVLRLLLR D++ P LFMDS+YYAS+ D++LEQQVVAEAQSVS+ALG+PLYRAGD++    P   E+S              AW E       +D + +++                  G ++G                                   ++ +MCEL+E+DGLS WVYSDGA+G A NPGVV RD S+ GS R + LA+LEY ++
Sbjct:  525 TWQSPYALADYYVMHRKDPEVLKVYVRFLLALLGLSGETVRDIRIRDPSNFEHMKHFPEDVRRQWHADPPTLAGTIDPQVIFRMGDDTRSCMGIRRSCSAQNRALMGYLLQGNARLVGVQSESGRMEARAVLRLLLRQDNLTPVLFMDSVYYASNLDSSLEQQVVAEAQSVSEALGIPLYRAGDKIAKVEPTPEEISERERQDAAADAAAAAWLEGEGGGAGDDGEEYDELQGRVFEVGVAEYREVDSGRAYGDXXXXXXXXXXXXXXXXXXXXXXXXDEGPLPPEDRESPEMCELIEMDGLSPWVYSDGAIGEATNPGVVQRDLSHAGSVRKVALAQLEYCEQ 868
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BLAST of mRNA_S-dermatodea_contig10335.245.1 vs. uniprot
Match: D7FXL8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXL8_ECTSI)

HSP 1 Score: 331 bits (848), Expect = 5.900e-102
Identity = 193/342 (56.43%), Postives = 227/342 (66.37%), Query Frame = 1 
Query:    1 TWHSPYALADYYVMHRKEREVLRDYLRFLRALLGVSRETVRDIRIKDPSNREHMRRFPENVRRLWEAEPSTLAGTMDPEVIFRMGDDTRSCMGIRRSCSAQNRALLGYLLQGNVRLLGVHSPSGRMEARAVLRLLLRSDSMAPALFMDSIYYASSPDTALEQQVVAEAQSVSDALGVPLYRAGDRV----PADGELS-------------GAW------EEEDD---------KHWEQG---------GSSFG--------------GGMTVNI-------------------DASKMCELVEVDGLSAWVYSDGAVGTAHNPGVVHRD-SYPGSPRTIVLA 801
            TW SPYALADYYVMHRK+ EVL+ Y+RFL ALLG+S ETVRDIRI+DPSN EHM+ FPE+VRR W A+P TLAGT+DP+VIFRMGDDTRSCMGIRRSCSAQNRAL+GYLLQGN RL+GV S SGRMEARAVLRLLLR D+M P LFMDS+YYAS+ D++LEQQV AEAQSVS+ALGVPLYRAGD++    P   E+S              AW      E+EDD         + +E G         G ++G              G +T +                    +A +MCEL+E+DGLS WVYSDGA+G A NPGVV RD S+ GS      A
Sbjct:  515 TWQSPYALADYYVMHRKDPEVLKVYVRFLLALLGLSGETVRDIRIRDPSNFEHMKHFPEDVRRQWHADPPTLAGTIDPQVIFRMGDDTRSCMGIRRSCSAQNRALMGYLLQGNARLVGVQSESGRMEARAVLRLLLRQDNMTPVLFMDSVYYASNLDSSLEQQVAAEAQSVSEALGVPLYRAGDKIAKVEPTPEEISEKERQDAAVHAAAAAWLEGEGGEDEDDVEEYDELQGRVFEVGVAEYREVDSGRAYGEXXXXXXXXXXXXXGHLTEDRAFQAGIAQYDEGPLPPEDREAPEMCELIEMDGLSPWVYSDGAIGEATNPGVVQRDLSHAGSAAAATAA 856
[Close]
BLAST of mRNA_S-dermatodea_contig10335.245.1 vs. uniprot
Match: D7FN50_ECTSI (Death domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN50_ECTSI)

HSP 1 Score: 263 bits (672), Expect = 1.520e-77
Identity = 146/279 (52.33%), Postives = 191/279 (68.46%), Query Frame = 1 
Query:    1 TWHSPYALADYYVMHRKEREVLRDYLRFLRALLGVSRETVRDIRIKDPSNREHMRRFPENVRRLWEAEPSTLAGTMDPEVIFRMGDDTRSCMGIRRSCSAQNRALLGYLLQGNVRLLGVHSP-SGRMEARAVLRLLLRSDSMAPALFMDSIYYASSPDTALEQQVVAEAQSVSDALGVPLYRAGDRVPADGELSGAWEEEDDKHWEQGGSSFGGGMTVNIDAS-KMCELVEVDGLSAWVYSDGAVGTAHNPGV-VHRDSYPGSPRTI---VLAELEYAQ 819
            TW SP  LADYY + +KER+V+ +Y+RFLRALLG S E++ D+R +DP+N + M+  P   R+LWEAEP TLAGT DP VIFRMG+DTRSCMGI+RSC   NR LLGYL+QGNVR +GV S   GRM+ARAVLR+L+RSD+    LFMD IYY+S+ D +LE+QV+ EA++VSDALG+PL+RAGD VP   ++      EDDK      +   G   +      K+C L+EV+GL+ +V+SD  V      G+ V  D  PG+   I   +LAEL Y +
Sbjct:  439 TWRSPQILADYYNIQQKERKVMGNYIRFLRALLGASDESLHDMRFRDPANAQQMQHLPARARQLWEAEPCTLAGTTDPCVIFRMGEDTRSCMGIQRSCIKTNRGLLGYLIQGNVRFVGVQSTRDGRMDARAVLRMLVRSDNKEAVLFMDKIYYSSNRDASLERQVIEEAKNVSDALGIPLFRAGDTVPRPPKM------EDDKAL----AGLSGPRAILARRKPKVCHLLEVNGLARFVHSDAPVAPLDTAGMLVREDPIPGTNYDIGRLILAELCYTE 707
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BLAST of mRNA_S-dermatodea_contig10335.245.1 vs. uniprot
Match: A0A7S0JBG9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JBG9_9EUKA)

HSP 1 Score: 111 bits (278), Expect = 2.060e-25
Identity = 61/182 (33.52%), Postives = 109/182 (59.89%), Query Frame = 1 
Query:    4 WHSPYALADYYVMHRKEREVLRDYLRFLRALLGVSRETVRDIRIKDPSNREHMRRFPENVRRLWEAEPSTLAGTMDPEVIFRMGDDTRSCMGI-RRSCSAQNRALLGYLLQGNVRLLGVHSPSGRMEARAVLRLLLRSDSMAPALFMDSIYYASSPDTALEQQVVAEAQSVSDALGVPLYRA 546
            W +P  L  Y   +R + ++ +  +R+LRA+ G+S ET+R IR + P N  H+ + P++V   W +E     GT   + +F +G+D  SC+ I     +  NRAL+GY+LQ +VR L V    GR+  R+++RL+LRSD++ P +F D +++       L+++++ +A+ + + +GVP+  A
Sbjct:    6 WRNPELLFRYLDDNRHDPQMEKLIVRWLRAIFGLSGETLRMIRRESPENVRHLLQIPQDVLLRWYSEKCP--GTSKCKTLFMVGEDAGSCLRIISNEGNRYNRALMGYVLQSHVRALVVTDTVGRVMCRSIIRLVLRSDTLTPVVFCDPMFFTLGYSQDLQRELLHQARQLEEQIGVPILHA 185
[Close]
BLAST of mRNA_S-dermatodea_contig10335.245.1 vs. uniprot
Match: A0A7S3SCT0_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3SCT0_EMIHU)

HSP 1 Score: 116 bits (291), Expect = 9.350e-25
Identity = 80/244 (32.79%), Postives = 130/244 (53.28%), Query Frame = 1 
Query:    4 WHSPYALADYYVMHRKEREVLRDYLRFLRALLGVSRETVRDIRIKDPSNREHMRRFPENVRRLWEAEPSTLAGTMDPEVIFRMGDDTRSCMGIRRS-CSAQNRALLGYLLQGNVRLLGVHSPSGRMEARAVLRLLLRSDSMAPALFMDSIYYASSPDTALEQQVVAEAQSVSDALGVPLYRAGDRVPADGELSGAWEEEDDKHWEQGGSSFGGGMT---VNIDASKM-CELVEVDGLSAWVYSD 720
            W +P  L  YY  +R++  +     R+LRA+  +S ET+R+IR    +NR H+  F E V   W AE     GT   + +F +G+D  SC+ +  S  S  N+AL+GY+LQ +VR+L V    GR+ AR+V+RLLLRSD+  P +F D +++       L+ +++ +A+++ + +GVP+  A   + A  E                GS   GG       +D   +  EL+E DG++ + YS+
Sbjct:  218 WRNPELLFRYYDDNRQDERMAPLIRRWLRAIFQLSGETLREIRRASAANRRHLDMFSEEVLERWYAEDCP--GTSQTKTLFMVGEDAGSCLRVISSEGSRYNKALMGYVLQSHVRVLVVTDNVGRVMARSVIRLLLRSDTREPVIFADPMFFTLGFSYELQAELLYQARALQEHMGVPVVHACSVLAAPPEA---------------GSCPEGGYVRRVTELDYDVVWVELLECDGVAPYTYSE 444
[Close]
BLAST of mRNA_S-dermatodea_contig10335.245.1 vs. uniprot
Match: A0A7S0P113_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0P113_9EUKA)

HSP 1 Score: 104 bits (260), Expect = 1.520e-22
Identity = 60/155 (38.71%), Postives = 95/155 (61.29%), Query Frame = 1 
Query:    4 WHSPYALADYYVMHRKEREVLRDYLRFLRALLGVSRETVRDIRIKDPSNREHMRRFPENVRRLWEAEPSTLAGTMDPEVIFRMGDDTRSCMGI-RRSCSAQNRALLGYLLQGNVRLLGVHSPSGRMEARAVLRLLLRSDSMAPALFMDSIYYASS 465
            W +P  L  Y   +R +  +     R+LR++LG+S ET+R +R +  +N  H+R FP+ V   W +E  +  GT   +V+F +G+D  SC+ I     +  N+AL+GY+LQ +VR L V   SGR+ AR+++RLLLRSD+  P +F D I+++ S
Sbjct:   56 WRNPELLFRYLSDNRDDARMAALVKRWLRSILGLSDETLRQMRRESAANVRHLRMFPKAVLLRWYSE--SCPGTSSMKVLFMLGEDAGSCLRIVGNEGNRYNKALMGYVLQSHVRALVVLDASGRVLARSLVRLLLRSDTRTPVIFCDPIFFSKS 208
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BLAST of mRNA_S-dermatodea_contig10335.245.1 vs. uniprot
Match: A0A7S3ACL8_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ACL8_9EUKA)

HSP 1 Score: 110 bits (274), Expect = 1.530e-22
Identity = 65/187 (34.76%), Postives = 108/187 (57.75%), Query Frame = 1 
Query:    4 WHSPYALADYYVMHRKEREVLRDYLRFLRALLGVSRETVRDIRIKDPSNREHMRRFPENVRRLWEAEPSTLAGTMDPEVIFRMGDDTRSCMGIRRSCSAQ-NRALLGYLLQGNVRLLGVHSPSGRMEARAVLRLLLRSDSMAPALFMDSIYYASSPDTALEQQVVAEAQSVSDALGVPLYRAGDRVP 561
            W  P  L  Y   +R++ ++     R++RA+LG+S ET+R +R +  +N  H++R P+     W +E     GT     +F +G+D  SC+ I  +   Q NRAL+GY+LQ +VR L V   SGR+ AR+++RLLLRSD++ P +F D +++       L+  + A+A+++     VP+  AG  +P
Sbjct:  185 WDHPELLFRYLDDNREDVQMAPLIKRWIRAILGLSDETLRQLRREAAANVRHLKRMPQAALLRWYSE--ACPGTSSMVTLFLLGEDAGSCLRIIGNEGNQYNRALMGYVLQSHVRALVVRDASGRVLARSLVRLLLRSDTLTPVIFCDPVFFTKHYSRELQASLHAQARALELHTRVPVVHAGSLLP 369
[Close]
BLAST of mRNA_S-dermatodea_contig10335.245.1 vs. uniprot
Match: A0A7S1ELQ8_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1ELQ8_HEMAN)

HSP 1 Score: 108 bits (271), Expect = 5.610e-22
Identity = 79/246 (32.11%), Postives = 115/246 (46.75%), Query Frame = 1 
Query:    4 WHSPYALADYYVMHRKEREVLRDYLRFLRALL-GVSRETVRDIRIKDPSNREHMRRFPENVRRLWEAEPSTLAGTMDPEVIFRMGDDTRSCMGIRRSCSAQNRALLGYLLQGNVRLLGVHSPSG-----RMEARAVLRLLLRSDSMAPALFMDSIYYASSPDTALEQQVVAEAQSVSDALGVPLYRAGDRVPADGELSGAWEEEDDKHWEQGGSSFGGGMTVNIDASKMCELVEVDGLSAWVYSDG 723
            W  P  L   + +   + E +      LRA++ G  +  + +IR +D  N++H  R    V   W A   +L GT D E +  MG+DTR+CM +  S +   + +LGYLLQGN RLL   +  G     R  ARAV RLLLR D+    LF+D  Y+    D             +++A+GV LYRA + +P    L+     ++            GGM          ELVE+ G S +V+ DG
Sbjct:  379 WRMPQLLLQMWELQGDDAECVELLKTLLRAMVSGDPKARIDEIRYRDQRNKQHFDRLDTAVVAKWSAHDGSLPGTDDVEALMMMGEDTRTCMAVHPSNANTQKGMLGYLLQGNTRLLVAGAVRGEDGRARFTARAVARLLLRRDNGETVLFVDRSYFEGERDEEAXXXXXXXXXXLAEAVGVRLYRAQNTLPPPEALAALDPPKE------------GGMYPY----PAVELVEMGGASPYVWRDG 608
[Close]
BLAST of mRNA_S-dermatodea_contig10335.245.1 vs. uniprot
Match: A0A7S2RIJ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RIJ2_9STRA)

HSP 1 Score: 100 bits (249), Expect = 4.300e-21
Identity = 62/156 (39.74%), Postives = 86/156 (55.13%), Query Frame = 1 
Query:    1 TWHSPYALADYYVMHRKEREVLRDYLRFLRALLGVSRETVRDIRIKDPSNREHMRRFPENVRRLWEAEPSTLAGTMDPEVIFRMGDDTRSCMGIRRSCSAQNRALLGYLLQGNVRLL---GVHSPSGRMEARAVLRLLLRSDSMA--PALFMDSIY 453
            TW  P+ +  +  +H+K+R V     R LRALLG   E+++D+R KDP N    +      R LW  +P+ L G+   E +F +G+D+ +C+ I      QNRALLGY  QGNVRL    G     G    RAV+RL+L SD     PALF++  Y
Sbjct:   26 TWRRPHLVLRFIQIHQKDRVVRSLASRMLRALLGDG-ESLQDLRFKDPRNAAVFQLLTAEQRELW-MQPAALPGSSKAEDLFMVGEDSGTCLAINDKNKGQNRALLGYCAQGNVRLALLNGDGGSGGASRCRAVIRLVLASDGSREQPALFLERAY 179
[Close]
BLAST of mRNA_S-dermatodea_contig10335.245.1 vs. uniprot
Match: A0A7S2JBG8_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2JBG8_9EUKA)

HSP 1 Score: 83.2 bits (204), Expect = 1.540e-13
Identity = 51/136 (37.50%), Postives = 77/136 (56.62%), Query Frame = 1 
Query:    4 WHSPYALADYYVMHRKEREVLRDYLRFLRALLGVSRETVRDIRIKDPSNREHMRRFPENVRRLWEAEPSTLAGTMDPEVIFRMGDDTRSCMGIR-RSCSAQNRALLGYLLQGNVRLLGVHSPSGRMEARAVLRLLL 408
            W SP  L  Y   +  + ++ R   R+LR+LLG+S ET+R+IR + P N  H++  P      W +E     GT    V+F +G+D  SC+ I     +  NRAL+ Y+LQ  VR L V +  GR+ AR+++RLL+
Sbjct:  296 WPSPELLFRYLDANSADAQMARLVKRWLRSLLGLSDETLREIRREAPPNVRHLQSLPRAAVLRWYSE--ACPGTSSMRVLFTLGEDAGSCLRITGNEGNKYNRALMSYVLQSTVRALVVRNEEGRVLARSLVRLLV 429
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10335.245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5LCB0_9PHAE7.030e-10655.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXL8_ECTSI5.900e-10256.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FN50_ECTSI1.520e-7752.33Death domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A7S0JBG9_9EUKA2.060e-2533.52Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A7S3SCT0_EMIHU9.350e-2532.79Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A7S0P113_9EUKA1.520e-2238.71Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A7S3ACL8_9EUKA1.530e-2234.76Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S1ELQ8_HEMAN5.610e-2232.11Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
A0A7S2RIJ2_9STRA4.300e-2139.74Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2JBG8_9EUKA1.540e-1337.50Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10335contigS-dermatodea_contig10335:139..4865 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score305.1
Seed ortholog evalue3.3e-80
Seed eggNOG ortholog2880.D7FXL8
EggNOG OGs2ES5T@1,2SUTI@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size1238
Cds size813
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10335.245.1prot_S-dermatodea_contig10335.245.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10335 178..4479 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924152.1170678-UTR-S-dermatodea_contig10335:138..1771622924152.1170678-UTR-S-dermatodea_contig10335:138..177Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10335 139..177 +
1694079053.2938142-UTR-S-dermatodea_contig10335:138..1771694079053.2938142-UTR-S-dermatodea_contig10335:138..177Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10335 139..177 +
1622924152.2034664-UTR-S-dermatodea_contig10335:4479..48651622924152.2034664-UTR-S-dermatodea_contig10335:4479..4865Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10335 4480..4865 +
1694079053.3576336-UTR-S-dermatodea_contig10335:4479..48651694079053.3576336-UTR-S-dermatodea_contig10335:4479..4865Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10335 4480..4865 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924152.1298335-CDS-S-dermatodea_contig10335:177..1981622924152.1298335-CDS-S-dermatodea_contig10335:177..198Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10335 178..198 +
1694079053.303782-CDS-S-dermatodea_contig10335:177..1981694079053.303782-CDS-S-dermatodea_contig10335:177..198Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10335 178..198 +
1622924152.1392348-CDS-S-dermatodea_contig10335:1139..12771622924152.1392348-CDS-S-dermatodea_contig10335:1139..1277Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10335 1140..1277 +
1694079053.3122327-CDS-S-dermatodea_contig10335:1139..12771694079053.3122327-CDS-S-dermatodea_contig10335:1139..1277Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10335 1140..1277 +
1622924152.152313-CDS-S-dermatodea_contig10335:1798..19201622924152.152313-CDS-S-dermatodea_contig10335:1798..1920Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10335 1799..1920 +
1694079053.3207662-CDS-S-dermatodea_contig10335:1798..19201694079053.3207662-CDS-S-dermatodea_contig10335:1798..1920Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10335 1799..1920 +
1622924152.1642706-CDS-S-dermatodea_contig10335:3024..31931622924152.1642706-CDS-S-dermatodea_contig10335:3024..3193Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10335 3025..3193 +
1694079053.3296797-CDS-S-dermatodea_contig10335:3024..31931694079053.3296797-CDS-S-dermatodea_contig10335:3024..3193Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10335 3025..3193 +
1622924152.177989-CDS-S-dermatodea_contig10335:3457..36371622924152.177989-CDS-S-dermatodea_contig10335:3457..3637Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10335 3458..3637 +
1694079053.340771-CDS-S-dermatodea_contig10335:3457..36371694079053.340771-CDS-S-dermatodea_contig10335:3457..3637Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10335 3458..3637 +
1622924152.1938877-CDS-S-dermatodea_contig10335:4296..44791622924152.1938877-CDS-S-dermatodea_contig10335:4296..4479Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10335 4297..4479 +
1694079053.3493428-CDS-S-dermatodea_contig10335:4296..44791694079053.3493428-CDS-S-dermatodea_contig10335:4296..4479Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10335 4297..4479 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10335.245.1

>prot_S-dermatodea_contig10335.245.1 ID=prot_S-dermatodea_contig10335.245.1|Name=mRNA_S-dermatodea_contig10335.245.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=271bp
MHRKEREVLRDYLRFLRALLGVSRETVRDIRIKDPSNREHMRRFPENVRR
LWEAEPSTLAGTMDPEVIFRMGDDTRSCMGIRRSCSAQNRALLGYLLQGN
VRLLGVHSPSGRMEARAVLRLLLRSDSMAPALFMDSIYYASSPDTALEQQ
VVAEAQSVSDALGVPLYRAGDRVPADGELSGAWEEEDDKHWEQGGSSFGG
GMTVNIDASKMCELVEVDGLSAWVYSDGAVGTAHNPGVVHRDSYPGSPRT
IVLAELEYAQKWDDFGDFAL*
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mRNA from alignment at S-dermatodea_contig10335:139..4865+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10335.245.1 ID=mRNA_S-dermatodea_contig10335.245.1|Name=mRNA_S-dermatodea_contig10335.245.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4727bp|location=Sequence derived from alignment at S-dermatodea_contig10335:139..4865+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACGTGGCACTCTCCCTACGCGCTGGCGGACTACTACGTCATGCACCGCAA
GGAGCGAGAGGCGAGTCAGGGATTTTGGTCCTGACTACTGTATGTATGTA
GTGTATACCAACCGCAATTGTACCCGAGGTTATCACTGCTGTAGTTCGAA
CGCCATTTTTCGTCGTCGTGGCAATGTGTAAACCCGGCCGATAGTGGGAA
GGTCGCGCCTCCTCTGCTCGTTAGGTGGCCCTTTCCCGGTGTTCGACCCC
GCAGCGCGCGGTAGGCAGCCGTTTGCGCTGTCGTCAACCATAGATTCGCT
ACAGTACGTCGAAAGGCACAGCAGAGTTCTCTTGTATTCGTTCCGCCGTG
TGCGTCGTATATGTAGCTGTATTCGGTTGGATGCGCCCTTTCGCCATGTG
ACCCGGAGGAGCCAGAACAGAGTGGACACCCCGGTGGCAAAATGCAACTT
GTGAGCAGTTATACCCCCTGACGTTGTTGTCGCCCTTTGGAGCTTAGTGC
AACTTACACACCACCCAACTGCTCTGTGCCAAACATGGGCGGCGCGATTT
TTTCGTACGTGCGCCTTCTGCCCACAGGGTTGTCATTTCTGGGCTGCCGC
TCTGTAAACGTTTTCCTCGCAAATGCGCGCTGAATGCGCCTTTTTACTTG
AAAACTAGTAATGTGCTGACGCTGGTGTAAATCCCCGACGCATGCGCGAT
TTTCAGTGCAGGCCGGGGGGGGGGGGGGTCTGTGGGGAGCATTTTCCGAC
CCGACCTTTCTGCTTTCGAAGTACGGGTGTCGAAGCTGTAAAAAACGCCA
ACGAAAAGTTGAACATATTATTAGCACATTTTATTATTAGCGCCAATAGT
TCTTTAGTGTGAATCTCTATGGAGTACTTGTAGCAGCCTGGTGTTCCCCC
CCTCCTTGATTTTATCGCTTGCCCTTCTTGTGCGCTCCATGTATGTGAAG
GATAAATCTGCAAAGCCCCCGCGGGACCGATACTTTGCCTGATTTTGCCA
GGTTTTGAGGGACTACCTCCGCTTCCTGCGCGCGCTGCTTGGCGTGTCGC
GCGAGACGGTTCGTGACATTCGCATCAAAGACCCGTCTAACCGAGAGCAC
ATGCGTCGGTTCCCGGAGAACGTGCGACGCTTGTGGGAGGTGAGCGCGCG
CAGGCAGTCTTGTTGGTGTTCGTTCGCCTACCGATATGTGCACAATACGT
GTGTGTACACTGGCGTACGATATGCAGTAGTATGGCGCCATGCACACGCA
CATGCCACTGCTGCCTGCATATGAAGCAGCACGCATTTTGTTAGCGGAAT
CGGGAAGAGGGGTCCTTGCCGGAGCGTTTTTTTTTTCTTTTTTTTTTCTG
GGCGATGAAAGTCATCAATCACATGCATTTTGAGCGGGTCGAAAAATCGA
GCCCACCCACCGCGGTGTGTTAAAATTCGTCATAGATACTTGTAGCAGCT
CCGGCACAGATGACGTCGGCGCCAGCTGTAGCTATAATAGCTGCTGCATG
CCTTCCACCCCCATACCTCCGACTATGAATGACATTTGTTCGTATGGTGG
TGGTCTCGTAAAATACTATTAATATACTATTAATATACTATTAATATACT
ATTACTAATGTTCCGAAACAAGATGACCACCACCTTGAAGCCTTTCTATC
GGCTTGCCAGGCGGAGCCGTCCACGCTAGCAGGGACGATGGACCCTGAGG
TGATATTCCGCATGGGAGACGACACGAGGTCGTGCATGGGCATTAGGCGC
TCCTGCTCCGCACAGAACAGGGCTCTTCTCGGGTGAGAGAGCGTGTACCC
CCGGGTTTCCCGCATGGTTGATGCTTCATTGCTTTCTCGTGCTGCTATCA
GATTGAATTTCTTCAGCGTTGGCACAAGTCGAGATCGATTATACGTGTGC
AAATTCATCAGTCAATCAGTCAATCAATCAAACAATCAATGGTTTGTTTG
CCGGCGAAGGTTTTCAGCGGTGTGTCCTATGAGGAGGAGATTGCCACAGC
TACTTGTACTACTGTATTATATTGAGAAGAGAAGTCACAGCTGTGTTCGT
TTTGCGGGAGGTGGTCGGTTTGACAAGGAAAAGCTGCCGTATCGCTGGCA
CAAACACAGCACTCTTAATATGTACTGCTGTACTTTAGTCGACAGCAGTG
GCAAGAACGCCAACATTTACCGTATTGACTACAAGCTGGGCCGGGCAAGA
ACCCAATATTTCAGTGGATTCGTTTTGCTCGGCTCGATTTTTCGAGTTTA
GCCCTGAAATTTTTACACGTGATTCGCACCGGCATCCAAAGGAGATTGTT
TTTCTCGTTTTTTTTAATTACGGTCGATTAGAGTTTTTTCCGGATTTTGG
ATTGGCCCTAGCTTTCGAAAAAAAAAAAACAAACATGTTTGAATGTCTCC
GCGAGGAGAGTGTGAATCACGTGTCAAAAGTTAAGGGCCAAACTCGAACA
ATTGAGCCGAGTAAAAACAAAACCGCAACAAAATCTCTGTACATACAAAC
TTACATTATATGAATGGAATTCGGCCATAACTTTTGAATTACGGGGAATC
ACTTGAAACAGCCACCATTCTTCTTCTCATAGAGAGAGCTACATGCATAG
AAAAAATGAGCAAAATCGGTCACAGCATATTTTGTATAAAAAATTCGAGC
GACCAACACTAAAACCCCTGACACAAACGTCGCCACCACCGAGACGCGAT
TTTCTCGACACTAACTCAGCGCAGAGCAATTTTGAAGTGCTCCATGTGGC
CGCGTTGGCTACTCCGTCACGGCAATATGCCTAGCCTGCGCCAATTCAGC
GGCATTCAAAATATGTGATCACCAGAAACAATATTGGTTTCATGGTCGGC
CCAGCTTGTAATCAATGCATCTTCGGCCTCCCGCAGGTACCTCCTCCAAG
GCAACGTCCGTCTCCTCGGAGTCCATTCCCCCTCGGGCCGCATGGAAGCG
CGAGCCGTGCTCAGACTGCTTCTGCGATCGGACAGCATGGCTCCTGCCCT
GTTCATGGACTCCATCTACTACGCCTCCAGCCCCGACACGGCCCTAGAGC
AGCAGGCGAGCGAATCGCCTACTGTTGACTGATTGTGCGAGTGCGAGGGA
TAAACGCTTGCTTGCGCGACGCGTCCACACATATCCTAATACCGTTTCCC
GCGCCCTCGGCGTTCTCTAATTGATTGTTGAGGCAACCGTTCGTACAGTA
TGCATATGTTCGTCCGGTGTAGTACTGGCTGTATACACGTTCGGTCGATA
GCTTTACGGTACCCTTCCTTGCTTGAACGTTCACGCTCGGGCACGCGGTC
GCGCTCGTTTTGGGAACAGGTTGTGGCGGAAGCGCAGAGTGTGAGCGATG
CGTTGGGCGTCCCACTCTACCGCGCCGGAGACAGAGTTCCAGCCGACGGA
GAGCTGAGCGGCGCGTGGGAAGAAGAGGACGACAAGCACTGGGAACAAGG
AGGGTCCAGCTTCGGAGGCGGCATGACTGTCAACATCGATGCATCAAAGG
TGAGGTTGGGCTGGGTTGTGAGTTGGTTCGGTGTGGGGAACCGCACACGC
ACCTCTATCCCTAGGCCATGTATTGCCTTCTCCTACGTGTGTTCGAGATC
GTTTTGAGAACGGGAATGCTTGCGAGATGCACTTGGGAGTCAAGGCACAC
AGCCGGCTAAGCACGGCGCAATGTTGCGGTGCTCGTCGAACGTTGTTAGA
GCAACATTTTTATATATATTATATATATATATAACAATATTATACCGGTT
CATTGTAGTACTTGTATTGCGGCGATGGAGGAAGCGCTCCTACTTGTATA
TCCAGGACCATTGCCCGTTCCCAGTGGGGTTCAACATTGGCGGCAACGTG
ACGAGCAGTCTTCGGCAGTAGTGCATCACTAATGGTGTATATGGAAAGCG
AGGTGTCCACCCCTGCGAGTGCTCACCGCCTTCGCGCCACCTACATGAGA
CACAACGGAGTTTGGCCGCGCAATAAAGCTGTGCAGGCGAAAGTTGCCCG
GTCGTTCACCTCTCCGTGTAAAACATTAAATATTAGGTGATACGTGCGCA
TAATAAAGGAGAGCCATGCAAGTACAAGCACAGCTTGTTTGGTCGGCTTT
TTGGCCCGTCCCGTGAATTCCATTACACCTTTTTCCCCTTTTGTTTACGT
CCGTACAGATGTGCGAGCTTGTCGAAGTGGATGGCTTATCGGCGTGGGTT
TACTCCGATGGCGCCGTGGGTACAGCCCATAACCCAGGGGTTGTTCACAG
AGATTCTTACCCGGGTTCCCCACGCACGATCGTGCTAGCCGAGCTGGAAT
ACGCCCAAAAATGGGACGATTTTGGAGATTTTGCTTTGTAGCAACGGCGC
CTGATTGTGCTTGTTGTATGTACAGTATGTGTGGAGATATCCACCACGTA
TTTCCGCGTCTCGTCCCGAGGAACCGTTCTATAGACCGTACCGCGTCTCC
ATGGCAGGTGAAAGCGGATGTTCGGTGCGTTGCCAGGAGAGCGAATTGTA
CTTTCGGTTCAGTCACAAAGCAGGTAGAGTGGTACAGTAGTGACAGTAAT
ACAGTAACGACCGATTGCTTTGTTTTTTTGCCTAGAGCTCACCGGTATAT
ATATACCATACATGGTACGCACTCGCTCAGAAGCTCATAAGTAGTGGAGA
TGACAAAAAAAAGTAAAAGTGCGACAGCAAGCAGGAGAATTATAAACAAA
CGTTCTTCGAGTTGTGTCTCCTGTATA
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Coding sequence (CDS) from alignment at S-dermatodea_contig10335:139..4865+

>mRNA_S-dermatodea_contig10335.245.1 ID=mRNA_S-dermatodea_contig10335.245.1|Name=mRNA_S-dermatodea_contig10335.245.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1626bp|location=Sequence derived from alignment at S-dermatodea_contig10335:139..4865+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCACCGCAAGGAGCGAGAGATGCACCGCAAGGAGCGAGAGGTTTTGAG
GGACTACCTCCGCTTCCTGCGCGCGCTGCTTGGCGTGTCGCGCGAGACGG
TTCGTGACATTCGCATCAAAGACCCGTCTAACCGAGAGCACATGCGTCGG
TTCCCGGAGAACGTGCGACGCTTGTGGGAGGTTTTGAGGGACTACCTCCG
CTTCCTGCGCGCGCTGCTTGGCGTGTCGCGCGAGACGGTTCGTGACATTC
GCATCAAAGACCCGTCTAACCGAGAGCACATGCGTCGGTTCCCGGAGAAC
GTGCGACGCTTGTGGGAGGCGGAGCCGTCCACGCTAGCAGGGACGATGGA
CCCTGAGGTGATATTCCGCATGGGAGACGACACGAGGTCGTGCATGGGCA
TTAGGCGCTCCTGCTCCGCACAGAACAGGGCTCTTCTCGGGCGGAGCCGT
CCACGCTAGCAGGGACGATGGACCCTGAGGTGATATTCCGCATGGGAGAC
GACACGAGGTCGTGCATGGGCATTAGGCGCTCCTGCTCCGCACAGAACAG
GGCTCTTCTCGGGTACCTCCTCCAAGGCAACGTCCGTCTCCTCGGAGTCC
ATTCCCCCTCGGGCCGCATGGAAGCGCGAGCCGTGCTCAGACTGCTTCTG
CGATCGGACAGCATGGCTCCTGCCCTGTTCATGGACTCCATCTACTACGC
CTCCAGCCCCGACACGGCCCTAGAGCAGCAGGTACCTCCTCCAAGGCAAC
GTCCGTCTCCTCGGAGTCCATTCCCCCTCGGGCCGCATGGAAGCGCGAGC
CGTGCTCAGACTGCTTCTGCGATCGGACAGCATGGCTCCTGCCCTGTTCA
TGGACTCCATCTACTACGCCTCCAGCCCCGACACGGCCCTAGAGCAGCAG
GTTGTGGCGGAAGCGCAGAGTGTGAGCGATGCGTTGGGCGTCCCACTCTA
CCGCGCCGGAGACAGAGTTCCAGCCGACGGAGAGCTGAGCGGCGCGTGGG
AAGAAGAGGACGACAAGCACTGGGAACAAGGAGGGTCCAGCTTCGGAGGC
GGCATGACTGTCAACATCGATGCATCAAAGGTTGTGGCGGAAGCGCAGAG
TGTGAGCGATGCGTTGGGCGTCCCACTCTACCGCGCCGGAGACAGAGTTC
CAGCCGACGGAGAGCTGAGCGGCGCGTGGGAAGAAGAGGACGACAAGCAC
TGGGAACAAGGAGGGTCCAGCTTCGGAGGCGGCATGACTGTCAACATCGA
TGCATCAAAGATGTGCGAGCTTGTCGAAGTGGATGGCTTATCGGCGTGGG
TTTACTCCGATGGCGCCGTGGGTACAGCCCATAACCCAGGGGTTGTTCAC
AGAGATTCTTACCCGGGTTCCCCACGCACGATCGTGCTAGCCGAGCTGGA
ATACGCCCAAAAATGGGACGATTTTGGAGATTTTGCTTTGTAGATGTGCG
AGCTTGTCGAAGTGGATGGCTTATCGGCGTGGGTTTACTCCGATGGCGCC
GTGGGTACAGCCCATAACCCAGGGGTTGTTCACAGAGATTCTTACCCGGG
TTCCCCACGCACGATCGTGCTAGCCGAGCTGGAATACGCCCAAAAATGGG
ACGATTTTGGAGATTTTGCTTTGTAG
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