mRNA_S-dermatodea_contig10324.242.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10324.242.1
Unique NamemRNA_S-dermatodea_contig10324.242.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10324.242.1 vs. uniprot
Match: D8LND9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LND9_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 1.020e-47
Identity = 91/170 (53.53%), Postives = 107/170 (62.94%), Query Frame = 1 
Query:    7 EENAMDEEGSGLM-YDQQLPYVPKAPPRTPAPVQFRAWRQENYGSMMTQAVVQDDAETLVWMVDHQLVDLAATDDLGNTAAHLAVFHDSPRVLRLLHGLGLDLAAPCDAMGFGSAIFYSVYLGRVQCLAELIALGYDMLPPCDRFERTPEMVAERHDQGAALALVHQSLA 513
            +E   DE+G+G      QLP+ PKAP R+PAP  F+AW+Q+ YG+MM QAV+QDDAE+L WM+ H LVDLAATDDLGNTAAHL VFHD PR   L+ G                               ELI LGYDM PPCDRF RTPE VAERHDQG   +L+ +SLA
Sbjct:   38 DEGDYDEDGTGHDGASAQLPFEPKAPERSPAPAIFKAWQQDKYGTMMMQAVLQDDAESLTWMLKHNLVDLAATDDLGNTAAHLGVFHDFPR---LVDG------------------------------TELIDLGYDMSPPCDRFGRTPETVAERHDQGGVRSLIRRSLA 174
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10324.242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LND9_ECTSI1.020e-4753.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10324contigS-dermatodea_contig10324:5691..7709 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-04_004200.1
Exons4
Model size513
Cds size495
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10324.242.1prot_S-dermatodea_contig10324.242.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10324 5691..7691 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924151.8514404-CDS-S-dermatodea_contig10324:5690..58131622924151.8514404-CDS-S-dermatodea_contig10324:5690..5813Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10324 5691..5813 -
1694079053.1037328-CDS-S-dermatodea_contig10324:5690..58131694079053.1037328-CDS-S-dermatodea_contig10324:5690..5813Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10324 5691..5813 -
1622924151.8601594-CDS-S-dermatodea_contig10324:6425..65401622924151.8601594-CDS-S-dermatodea_contig10324:6425..6540Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10324 6426..6540 -
1694079053.126215-CDS-S-dermatodea_contig10324:6425..65401694079053.126215-CDS-S-dermatodea_contig10324:6425..6540Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10324 6426..6540 -
1622924151.867223-CDS-S-dermatodea_contig10324:7012..71371622924151.867223-CDS-S-dermatodea_contig10324:7012..7137Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10324 7013..7137 -
1694079053.1369245-CDS-S-dermatodea_contig10324:7012..71371694079053.1369245-CDS-S-dermatodea_contig10324:7012..7137Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10324 7013..7137 -
1622924151.8748116-CDS-S-dermatodea_contig10324:7559..76911622924151.8748116-CDS-S-dermatodea_contig10324:7559..7691Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10324 7560..7691 -
1694079053.1452873-CDS-S-dermatodea_contig10324:7559..76911694079053.1452873-CDS-S-dermatodea_contig10324:7559..7691Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10324 7560..7691 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924151.889542-UTR-S-dermatodea_contig10324:7691..77091622924151.889542-UTR-S-dermatodea_contig10324:7691..7709Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10324 7692..7709 -
1694079053.1534524-UTR-S-dermatodea_contig10324:7691..77091694079053.1534524-UTR-S-dermatodea_contig10324:7691..7709Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10324 7692..7709 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10324.242.1

>prot_S-dermatodea_contig10324.242.1 ID=prot_S-dermatodea_contig10324.242.1|Name=mRNA_S-dermatodea_contig10324.242.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=165bp
MDEEGSGLMYDQQLPYVPKAPPRTPAPVQFRAWRQENYGSMMTQAVVQDD
AETLVWMVDHQLVDLAATDDLGNTAAHLAVFHDSPRVLRLLHGLGLDLAA
PCDAMGFGSAIFYSVYLGRVQCLAELIALGYDMLPPCDRFERTPEMVAER
HDQGAALALVHQSLA
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mRNA from alignment at S-dermatodea_contig10324:5691..7709-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10324.242.1 ID=mRNA_S-dermatodea_contig10324.242.1|Name=mRNA_S-dermatodea_contig10324.242.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2019bp|location=Sequence derived from alignment at S-dermatodea_contig10324:5691..7709- (Saccorhiza dermatodea SderLu1190fm monoicous)
GACGGAGAAGAAAATGCGATGGACGAGGAAGGTAGCGGCCTCATGTACGA
TCAGCAACTTCCATACGTGCCGAAGGCACCTCCGCGAACTCCTGCACCGG
TGCAGTTCAGAGCGTGGCGACAGGAGAACTACGGGTCGATGATGACCCAG
GTATATCAGATGGTGCTTGCCTTCCCAAGACATACTATTTACGTGTTTAG
TTGCAAGCATCGGGCGATCCATTAGATAATTTAAATCCTGCCGACGCCAT
AGTATTATTATTATGCCTTCCCTGCTCTGGGAATTGCTTCGGATATCTGA
AGGGAATCACGTCGTCACATAATCACGTCACAGAGTTTGGCTACACTAAC
TATTAGTAGTATTTAACATTCGAGCGGGAATATAATTGCTCTTGGCGCAG
TACCATCTCCGCGCAATCGTGCGGTGACGGTGACTCGTCGAATTGGATCG
CGAAAGGTCGTTGGTTGGACAGCGAAGACGCAACTAAACAGCTCTACACG
GTAGTCGTCCCCGGGTTGTGCAGTCGAACACGGTGGTCCATCCAAAGCTT
CCATATTTCGGGTGCGCGCCAGGCAGTAGTACAAGACGATGCGGAGACCC
TCGTTTGGATGGTCGATCACCAGCTGGTGGATTTGGCAGCAACGGATGAC
CTTGGGAACACTGCGGCTCACCTTGCGGTATTTCACGACTCCCCCAGGTC
AGCTATAGCTGTGTTCGCCTACTGTGCAATTGCGACGTCCCCAGTCGTGG
TGCAAAGCCCCCTGTTTCATATTTTCGATGGCTTTATCGGTGGGAAAAGG
CCCTCGGTAAATAACAGAACACGAAGACGACAGTGTTGTTCAATTGCCCT
CACATGAGACAGTTCGCCAAATCAAAGTGCCCGTTCAGTATCTAGTGAGT
CCGACGAAGCAAGCTTGAATACAAACTAAGCAGTATTCCGCGTTGCCACT
TCTGCAAGCTCGTGGGCGTTTTAATTAACCGCGTCTCAACCATTGCACCT
TCAGAGCATGAATGCGATATAAACAGGCACCCATGTACGCTTGGAAAATG
ATACCCAACGAAAGCGGTCCACGCCCCCGCCCTCGCAATCGCTAGCGTGC
ACCCGCGTCTAGTGTATCTCTCCTGTTTATTTAACTTCGTTTCGTCCGTG
ATGTTGACGTCTGTGGTAGGGTCCTGCGCTTGCTCCACGGTTTGGGGCTG
GACCTGGCTGCCCCGTGCGATGCGATGGGCTTTGGATCGGCCATCTTCTA
CTCGGTCTACCTCGGGCGCGTTCAGTGTCTTGCGGTACGACTAATCTCGA
CAAGGCAGCATTCGCATGCGAGCTTAGTTTCCCCAGGTCAATCCCGCCAA
GATGTCGTTCCTTCATGGTGATATGTCGAGGTACTCCGAAGATGCAGTTT
TTCCAGCTGTAATCCATACTTACTCCTTGCTTTCTGCCTGCCGCACAACG
TCATAAGCCGATTGGGCAATGTCTGCGGCCTTCATCGCCGTTTCCACAAC
TATTTAGTGTGCACGGCATCTGCCCAAATTTGCACCAGTACGTTGCGCGC
GCTGCGGCCAGAGGAACTCGCAAATCAAAAATATACAACTGTAAACGCTC
CACAGGGTGGATGTGGCCAGTACACAACGGTGCTGGTTTCTGTTTTCCGC
TGGAACGTGTGACACGATCGTGGCAATTGGTGCTAGAAGCAAGCTCCATG
CTTAGGCGCAAGTACGTGCACAACAGCGTGTCGAGCACACACACGCGAAA
AAGCCGAACGACAAAAAAAGTACCTGGTACAGGAGAAATTATGGTTGACT
GCGAAACATTCCTCTGTTTGGGTACCAAACAAATCGTTTCGACGCTGACT
CATGCCACTCTGGTAATACGATACCGTCGTACAACGCGGCTGGCAGGAGC
TCATCGCCCTCGGCTACGACATGTTGCCGCCCTGCGACCGCTTCGAACGA
ACGCCCGAAATGGTTGCAGAGCGCCACGACCAAGGAGCCGCGCTCGCTCT
CGTTCACCAAAGCCTCGCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10324:5691..7709-

>mRNA_S-dermatodea_contig10324.242.1 ID=mRNA_S-dermatodea_contig10324.242.1|Name=mRNA_S-dermatodea_contig10324.242.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=990bp|location=Sequence derived from alignment at S-dermatodea_contig10324:5691..7709- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGACGAGGAAGGTAGCGGCCTCATGTACGATCAGCAACTTCCATACGT
GCCGAAGGCACCTCCGCGAACTCCTGCACCGGTGCAGTTCAGAGCGTGGC
GACAGGAGAACTACGGGTCGATGATGACCCAGATGGACGAGGAAGGTAGC
GGCCTCATGTACGATCAGCAACTTCCATACGTGCCGAAGGCACCTCCGCG
AACTCCTGCACCGGTGCAGTTCAGAGCGTGGCGACAGGAGAACTACGGGT
CGATGATGACCCAGGCAGTAGTACAAGACGATGCGGAGACCCTCGTTTGG
ATGGTCGATCACCAGCTGGTGGATTTGGCAGCAACGGATGACCTTGGGAA
CACTGCGGCTCACCTTGCGGTATTTCACGACTCCCCCAGGCAGTAGTACA
AGACGATGCGGAGACCCTCGTTTGGATGGTCGATCACCAGCTGGTGGATT
TGGCAGCAACGGATGACCTTGGGAACACTGCGGCTCACCTTGCGGTATTT
CACGACTCCCCCAGGGTCCTGCGCTTGCTCCACGGTTTGGGGCTGGACCT
GGCTGCCCCGTGCGATGCGATGGGCTTTGGATCGGCCATCTTCTACTCGG
TCTACCTCGGGCGCGTTCAGTGTCTTGCGGGTCCTGCGCTTGCTCCACGG
TTTGGGGCTGGACCTGGCTGCCCCGTGCGATGCGATGGGCTTTGGATCGG
CCATCTTCTACTCGGTCTACCTCGGGCGCGTTCAGTGTCTTGCGGAGCTC
ATCGCCCTCGGCTACGACATGTTGCCGCCCTGCGACCGCTTCGAACGAAC
GCCCGAAATGGTTGCAGAGCGCCACGACCAAGGAGCCGCGCTCGCTCTCG
TTCACCAAAGCCTCGCGGAGCTCATCGCCCTCGGCTACGACATGTTGCCG
CCCTGCGACCGCTTCGAACGAACGCCCGAAATGGTTGCAGAGCGCCACGA
CCAAGGAGCCGCGCTCGCTCTCGTTCACCAAAGCCTCGCG
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