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Homology
BLAST of mRNA_S-dermatodea_contig10321.237.1 vs. uniprot
Match: A0A6H5L011_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L011_9PHAE) HSP 1 Score: 261 bits (667), Expect = 1.320e-77 Identity = 123/148 (83.11%), Postives = 140/148 (94.59%), Query Frame = 1
Query: 1 AACYSWEARAHAKKEKANLKLREQRAKLKLLGAGRQWEGSLRVRDRPGDPWESRYVVVLGHRLTWWSSSKELDEGRRAQGQLLLQGHAGVTHLSPVEAREVSDPRKVVCVFGRSPEGLPHKVSFMADSVAAKTALENAVSSVVETKRD 444
AACY+WEAR H++KEKA LKLREQRA+LKLLGAGRQWEG +RVRDR GDPWESRYVVVLGHRL WW SSKELD+G++A+GQLLLQGHAGVTHLSP+EARE++DPRKVVCVFGRSP+GLPHKVSFMA+S+AAK ALENAV SV+ETK+D
Sbjct: 1999 AACYAWEAREHSRKEKAGLKLREQRARLKLLGAGRQWEGGMRVRDRAGDPWESRYVVVLGHRLAWWGSSKELDDGKKARGQLLLQGHAGVTHLSPLEARELNDPRKVVCVFGRSPDGLPHKVSFMAESIAAKEALENAVFSVMETKKD 2146
BLAST of mRNA_S-dermatodea_contig10321.237.1 vs. uniprot
Match: D7G411_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G411_ECTSI) HSP 1 Score: 261 bits (666), Expect = 1.790e-77 Identity = 123/148 (83.11%), Postives = 140/148 (94.59%), Query Frame = 1
Query: 1 AACYSWEARAHAKKEKANLKLREQRAKLKLLGAGRQWEGSLRVRDRPGDPWESRYVVVLGHRLTWWSSSKELDEGRRAQGQLLLQGHAGVTHLSPVEAREVSDPRKVVCVFGRSPEGLPHKVSFMADSVAAKTALENAVSSVVETKRD 444
AACY+WEAR H++KEKA LKLREQRA+LKLLGAGRQWEG +RVRDR GDPWE RY+VVLGHRL WW SSKELD+G++A+GQLLLQGHAGVTHLSP+EARE++DPRKVVCVFGRSP+GLPHKV+FMA+SVAAK ALENAVSSV+ETKRD
Sbjct: 1862 AACYAWEAREHSRKEKAGLKLREQRARLKLLGAGRQWEGEMRVRDRAGDPWEPRYLVVLGHRLAWWGSSKELDDGKKARGQLLLQGHAGVTHLSPLEARELTDPRKVVCVFGRSPDGLPHKVTFMAESVAAKEALENAVSSVMETKRD 2009
BLAST of mRNA_S-dermatodea_contig10321.237.1 vs. uniprot
Match: B7FSK0_PHATC (Predicted protein n=4 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FSK0_PHATC) HSP 1 Score: 78.2 bits (191), Expect = 1.210e-13 Identity = 37/100 (37.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query: 151 WESRYVVVLGHRLTWWSSSKELDEGRRAQGQLLLQGHAGVTHLSPVEAREVS--DPRKVVCVFGRSPEGLPHKVSFMADSVAAKTALENAVSSVVETKRD 444
W + + V+ GHRL WW S+ D G A+GQL LQGHAG+ +P+E + + D R+V+ VFG+ G +++ +A + K LE + V K D
Sbjct: 1521 WRTAFAVIHGHRLLWWKSAMAFDNGDAAEGQLFLQGHAGLATPTPLEMKAIKPEDSRRVISVFGKG-AGKQERITVLAPTHKEKVKLEEVIGFAVAGKND 1619
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 262.3 |
| Seed ortholog evalue | 1.4e-67 |
| Seed eggNOG ortholog | 2880.D7G411 |
| KEGG ko | ko:K10360,ko:K19839,ko:K20644 |
| KEGG Pathway | ko04011,map04011 |
| GOs | GO:0001709,GO:0003674,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005938,GO:0006996,GO:0007010,GO:0008047,GO:0008104,GO:0008150,GO:0009987,GO:0015630,GO:0016043,GO:0030029,GO:0030036,GO:0030154,GO:0030234,GO:0030695,GO:0030865,GO:0030866,GO:0032502,GO:0032970,GO:0033036,GO:0043085,GO:0043087,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0045165,GO:0045167,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0051179,GO:0051336,GO:0051345,GO:0060589,GO:0065007,GO:0065009,GO:0071840,GO:0071944,GO:0098772,GO:0099568 |
| EggNOG free text desc. | GTPase activator activity |
| EggNOG OGs | KOG1453@1,KOG1453@2759 |
| COG Functional cat. | Z |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko04131,ko04812 |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 518 |
| Cds size | 447 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622924151.469524-UTR-S-dermatodea_contig10321:4428..4498 | 1622924151.469524-UTR-S-dermatodea_contig10321:4428..4498 | Saccorhiza dermatodea SderLu1190fm monoicous | UTR | S-dermatodea_contig10321 4429..4498 - |
| 1694079052.814568-UTR-S-dermatodea_contig10321:4428..4498 | 1694079052.814568-UTR-S-dermatodea_contig10321:4428..4498 | Saccorhiza dermatodea SderLu1190fm monoicous | UTR | S-dermatodea_contig10321 4429..4498 - |
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig10321.237.1 >prot_S-dermatodea_contig10321.237.1 ID=prot_S-dermatodea_contig10321.237.1|Name=mRNA_S-dermatodea_contig10321.237.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=149bp
AACYSWEARAHAKKEKANLKLREQRAKLKLLGAGRQWEGSLRVRDRPGDP
WESRYVVVLGHRLTWWSSSKELDEGRRAQGQLLLQGHAGVTHLSPVEARE
VSDPRKVVCVFGRSPEGLPHKVSFMADSVAAKTALENAVSSVVETKRD* back to topmRNA from alignment at S-dermatodea_contig10321:4429..7892- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig10321.237.1 ID=mRNA_S-dermatodea_contig10321.237.1|Name=mRNA_S-dermatodea_contig10321.237.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3464bp|location=Sequence derived from alignment at S-dermatodea_contig10321:4429..7892- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCGCGTGTTACTCTTGGGAGGCGAGAGCGCACGCCAAGAAGGAAAAAGC
AAACCTGAAGCTCAGAGAGCAGAGGGCCAAGCTCAAGCTCCTGGGAGCTG
GACGCCAGTGGGAAGGGTCCCTCAGGGTTAGAGATCGTCCTGGAGACCCA
TGGGAGTCAAGGTGCTTCCCGCTGGGGGTTTTGCTGCTTTCCATTGGTTT
GATTCGCGTTGGCGTAGGGGGGCGAATTCATCCCGCGGTGGTCGCTGATG
GTGTGTTGTTGTTTGTCTGCGCGCGTCAGGGCCCTGTGCTTGTTTTTGTG
GGCTCAGGCGTTCCGGGAGGCCTTGCCGGTTATATCTTGTCATGTCTATA
GACATTGCGTTTTGTGTTGGGTTTATGACAGGGGTGCTGGATTCCAGTTG
CTCTTGTGCCTTCATGTGACCACGAGCAGGATCGGGAGCCATTGTCTGCA
ATTGTAACTATTACGGAGAGGACCATGGTTGACAGGTCCAAATTTGCCAC
GAGTCTTAACCTAGAAAAATCAAAACAGGCCGGAATTATCGAGATTTCAA
CATCGATGTTCATGAGTATGGCCATAATCTCGTGGTTTTTGTTTTTCGTG
AGATTTTTGTTGTTGTTTGGGTATTGTATTGTATTGTATTGTTTTGTATT
GTATTGATGGTATTACAGTAATAGGAATAGTTGGGTATTACTGGCTATGA
GATTTTGACCTGTTAACGTTAACTATGCTCCTCCGTTATTGTGGGCCGGC
CGGTCGGTTGTATGCGTGATAAATCAATCAACCCATCAATGGTGGAGACG
CTTTTCTTGTCACGCCGTCATGGCTGAGATGGGGTTTCTCTCTTCGCGCC
GCGGACACGACAGCCAGCACCACAGCTCGTTCGCCGTGTTTTCAGTGTAC
ATCAACGCTTCCGCGGCTGTCGTTGGAAGCGCCCTTCGCAGCCCCAGTCC
GCGTGTACCGACGGCGCAATCCGCAAGCGCTGCGCGGCCGTGATAAACTT
ACCGTTGCCCCGTCCCCATTTTTGACAGGTACGTCGTCGTTTTGGGGCAC
CGACTGACGTGGTGGAGCAGCTCGAAGGAGTTGGACGAGGGCCGGAGGGC
CCAGGGGCAGCTCCTGCTGCAGGTAACAATCGTTTAACTTCCCTCCTGTT
TGAAACCGTTCGAAAATTGTAGCAAGTATACCACACAGCAGAGACGCGGG
CTGGCACCCGCAGACCAGCACCTCTCGGCGGGTTTTGAGAGCACGTGAAC
CCGAAGAACCCCGAGAACGCTTGTTTTGTACTATTACGGGGGACCTATAG
TTAACAGGTCCACATTTGCCCCAATTCTCAAAAACTAGAAAAATCAAAAT
ATTAACAGGCCGGAATTATCGAGATTTCAAGGCCGATGTTCATGAATATG
GCCATAATCTCGTGTTGTTTGTTTTTCCATGAGATATTTGTTGTTGTTTG
GGTACTAATGATAATAAAAGTTGGGTATTGCTGGGCATGAGATTTGGACC
TGTTAACGTTAACTATGCTCCTCCGTAATAGTATAATATTAATATAGTAC
AATCAATAGTATAATACAATACAATCATTATCATAGTACAGGAAGAGATT
TAGTGAGCAGGACCGCTTGGCGCCCGGCGATTCGGGTCCCCAATATGTCA
CGGGATTTACCCCAAGCATTAGGGGTCGCACGCCTGACTCGCTCACGAAG
AAGGCGCTGGCTGCTCCGTGCAGAAGATCAGCTTCGACGAAAATTTGCGT
CAATCTTGGTTTTGCTAGAAGCGTGCGAAACGTAGTAAAACGCGGCTGTC
CGAGAGCCTTCTCCTGCTTTGCCATGCGGGCGTCCGTCTCGCTCGCTTCT
GCAGCTTTTCCCTCCCTGCGTGTTTTTTTGTGTCGTGATGGCTGTTTTCG
TAGTTCGGGTGGCCGTTGGAATTTTGCTGATTTCACGGCTGGTGTGCACT
GTACTAATATTAATAGTGACAGTCGGTGTACATGCCGATTGCTGCTCGAA
CGTGGAGATCGGGGGCAACATTGTCTGTTTTGAGTGTAACGTTCCCTGCT
GTAGGAGAGGGGATCGTTTTTCTTCTTTCTGTTTCTGTTTCTGTTTCTGT
TTTTTTTTTTTTTCTTTTCTTAGCAAGCTGCCCAAGTTCCGAGGTATGCC
CCTTCTGGTTCCGAGAATTAGTTATAGTTTATGTCATCAAGTCCTTCTTT
GTACTCCGGAGTATGTATTATATAGGGGAATTCCGTAGGGTTTTTTCTCG
ATCTCTCGATTTTTCTCATCATTGACCACGAGCGGGATCGGCAACCATTG
ATGGGCCGGTCGGTTGTATGTGTGATAATATTAATATTAATAATAATAAT
CATCATCATCATCATCATCATAATAATAATAATAGTAATAATAGTAATAA
TAGTCATAATACTAATATTAATAATAATATTAATGATAATAACTATTAAT
AATATTAATAATAATAATGTTAATAATAATAATGTTAATAATAATAATGT
TAATAATAATAATGTTAATAATAATAATGTTAATAATAATAATGTTAATA
ATAATAATGTTAATAACAATAATGTTAATAATAATAATGTTAACAATAAT
AATGTTAATAATAATAAGGGTGCTGCCACACCGCCGTCGTTGTGTGTGTC
TTGTTTGTTTTGACGCGCTCGCGTTTCGCTGGCTGTGTACGTCTCTCGAT
CGGCCGATCGATCATGCTCTCAGGGTCACGCGGGGGTTACCCACCTGTCT
CCGGTCGAGGCGCGGGAGGTCAGCGATCCAAGAAAGGTGGTGTGCGTGTT
TGGACGGAGCCCGGAAGGCCTGCCCCACAAGGTGATGCAGTGGGCGGGGA
AAACGTATCAGTTTTTATCCCTTTCGTGGTTTGTTGCGTATCAGACGGTC
TCGTCGATAATGACGCGGGTGCGGTTTGAGTGAAACGAAGCGAACCGAAA
CGCCTCTGTGAATATTTAAGTCGTGTTTGTTGTTTGCCCCCACCGTTGTG
TTTGGTGATCGTGGAGAGGGAGCAGTGGTTCGGCCGTGCGGTAGCGACAT
CGAAGCGCGGAACATCGCGCCTTCGGACAACACACACGTTCGCGTTTGCG
CGTGAAGAGGAAACGCGAATAAAATAAAATACAATAAAATAAAACTGTTT
TTCCGACGCGTCGCGTAGGCAGCGCAGCGCAGCGGGTAGCTTCCTTTTGC
CGCTCCTTTTAGTCCTCGTCATCGGATGGCGTGTTGAGGTCGACCGTTCG
AGCGAAACAATAAAACGCTCCCCTCGTGCTGCCATGCTTTTTTTTTTTTT
TTTTTTGCAGGTGTCATTCATGGCCGATTCCGTGGCGGCAAAGACGGCTC
TGGAGAACGCGGTGTCTTCCGTCGTGGAAACCAAGAGAGACTAAAATATA
TTAATAGGTCGTTAGCCCTTGCACGCACACACGGCCACGACTTCGGGGCG
CGCTTTAGTCTGGT back to topCoding sequence (CDS) from alignment at S-dermatodea_contig10321:4429..7892- >mRNA_S-dermatodea_contig10321.237.1 ID=mRNA_S-dermatodea_contig10321.237.1|Name=mRNA_S-dermatodea_contig10321.237.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=894bp|location=Sequence derived from alignment at S-dermatodea_contig10321:4429..7892- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCGCGTGTTACTCTTGGGAGGCGAGAGCGCACGCCAAGAAGGAAAAAGC
AAACCTGAAGCTCAGAGAGCAGAGGGCCAAGCTCAAGCTCCTGGGAGCTG
GACGCCAGTGGGAAGGGTCCCTCAGGGTTAGAGATCGTCCTGGAGACCCA
TGGGAGTCAAGGCCGCGTGTTACTCTTGGGAGGCGAGAGCGCACGCCAAG
AAGGAAAAAGCAAACCTGAAGCTCAGAGAGCAGAGGGCCAAGCTCAAGCT
CCTGGGAGCTGGACGCCAGTGGGAAGGGTCCCTCAGGGTTAGAGATCGTC
CTGGAGACCCATGGGAGTCAAGGTACGTCGTCGTTTTGGGGCACCGACTG
ACGTGGTGGAGCAGCTCGAAGGAGTTGGACGAGGGCCGGAGGGCCCAGGG
GCAGCTCCTGCTGCAGGTACGTCGTCGTTTTGGGGCACCGACTGACGTGG
TGGAGCAGCTCGAAGGAGTTGGACGAGGGCCGGAGGGCCCAGGGGCAGCT
CCTGCTGCAGGGTCACGCGGGGGTTACCCACCTGTCTCCGGTCGAGGCGC
GGGAGGTCAGCGATCCAAGAAAGGTGGTGTGCGTGTTTGGACGGAGCCCG
GAAGGCCTGCCCCACAAGGGTCACGCGGGGGTTACCCACCTGTCTCCGGT
CGAGGCGCGGGAGGTCAGCGATCCAAGAAAGGTGGTGTGCGTGTTTGGAC
GGAGCCCGGAAGGCCTGCCCCACAAGGTGTCATTCATGGCCGATTCCGTG
GCGGCAAAGACGGCTCTGGAGAACGCGGTGTCTTCCGTCGTGGAAACCAA
GAGAGACTAAGTGTCATTCATGGCCGATTCCGTGGCGGCAAAGACGGCTC
TGGAGAACGCGGTGTCTTCCGTCGTGGAAACCAAGAGAGACTAA back to top
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