mRNA_S-dermatodea_contig10315.236.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10315.236.1
Unique NamemRNA_S-dermatodea_contig10315.236.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig10315.236.1 vs. uniprot
Match: A0A6H5K335_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K335_9PHAE)

HSP 1 Score: 507 bits (1305), Expect = 6.680e-169
Identity = 281/443 (63.43%), Postives = 326/443 (73.59%), Query Frame = 1
Query:    1 SAKDMLGAMSKVQPDANDDLEAAQAALCALFRSENLPPQRVSCAVLMGHTSDSWGGLYHARGGFRVLAEGLVESIRASGGRVLTRARTTSVLVRDGRAAGVSVVRETSTSTPTPTLGGGSKGGVEILLSPDAGSSVISSIGVIDTFRFLVPXXXXXXD-ASSGEKT---AGVAPAAGGEGAAVDDPVSAKSGEKGLEPAGFRSLRAARPRVHLCVGLRGNWLEDFDGTGAYFHHVRNSTI---DDGGGGERFNXXXXDRLDPGASR------DWYRISFGEPKDSSGWGKDTTTCVVTAEMGDDMTKLAIDGAGSTDSPIGPLDYTVQTGRSARDRMRERLLRRLHQEFPQTEGCDEFVVMTEQPRAGLSHGPERYLAEGLRAPTKLPGLFLAGEDLTISGMEGAIMGGWIAAHAALGYTPTDMFLRRRSLAADIPNLDKLQQ 1290
            S  +M+ AM K QP+ NDDLEAAQAALCA+FRSENL P RVSCA LMG TS +WGGLYH RGGFR +AE LV+S+ ASGGRVLTRA+ TSV+V   RA GV+VVRE S               V ++++ D   SVISSIG+IDTFR L+P        A+SG  T   AG  PAA G+       +  K GE GL+PAGFR LRAARPRVHLCVGL+GNWLED DGT +Y HHV        ++G  GER       R   G  R      DW RISFGE KDS+GW K+TT+ VVTAEM ++M KL IDG GST+ PIGPL YTVQ GRS R+R+RERLLRRLHQ+FPQT+G DEF+++ EQPRAGLS GPERYLA+G+RAPTK+PGLFLAGEDLTISGMEG +MGGWIAAHAALGYTPTDMFLRRRSLA+DIPNLDKL++
Sbjct:  393 SVSEMMKAMLKTQPEGNDDLEAAQAALCAMFRSENLAPSRVSCAALMGQTSSAWGGLYHPRGGFRAIAEELVDSVHASGGRVLTRAKATSVIVGRERAEGVTVVRE-SGGXXXXXXXXXXXXXVNVMVAGDGLGSVISSIGIIDTFRGLLPRKSPLTTGAASGSATTAAAGDGPAAAGKTGETVTALGEKDGE-GLDPAGFRILRAARPRVHLCVGLQGNWLEDLDGTSSYVHHVSGLGYFCGENGFCGERGLVWYATRGGGGHERHEGKLPDWCRISFGESKDSAGWKKETTSVVVTAEMTEEMAKLTIDGVGSTNEPIGPLRYTVQPGRSGRERLRERLLRRLHQDFPQTQGRDEFIMLAEQPRAGLSEGPERYLAKGVRAPTKVPGLFLAGEDLTISGMEGGVMGGWIAAHAALGYTPTDMFLRRRSLASDIPNLDKLRR 833          
BLAST of mRNA_S-dermatodea_contig10315.236.1 vs. uniprot
Match: A0A835Z712_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z712_9STRA)

HSP 1 Score: 212 bits (539), Expect = 4.380e-57
Identity = 147/410 (35.85%), Postives = 198/410 (48.29%), Query Frame = 1
Query:   55 DLEAAQAALCALFRSENLPPQRVSCAVLMGHTSDSWGGLYHARGGFRVLAEGLVESIRASGGRVLTRARTTS-VLVRDGRAAGVSVVRETSTSTPTPTLGGGSKGGVEILLSPDAGSSVISSIGVIDTFRFLVPXXXXXXDASSGEKTAGVAPAAGGEGAAVDDPVSAKSGEKGLEPAGFRSLRAARPRVHLCVGLRGNWLEDFDGTGAYFHHVRNSTIDDGGGGERFNXXXXDRLDPGASRDWYRISFGEPKDSSGWGKDTTTCVVTAEMGDDMTKLAIDGAGSTDSPIGPLDYTVQTGRSAR--DRMRERLLRRLHQEFPQTEGCDEFVVMTEQPRAGLSHGPERYLAEGLRAPTKLPGLFLAGEDLTISGMEGAIMGGWIAAHAALGYTPTDMFLRRRSLAADIPNL 1275
            D    +AAL +LF +ENLP + V+    +   + S  G ++ RGG+R +A  L+ ++ A+GGRVLTRA   + V    GRAAGV++             GGG  GG E+ +    G  V+S++G I+TF  L+                             DD   A  G     PAGF +LRAARPR+HLCVGL GNW E  D T A +  VR+       G  R +    D+       +W R+SF   KD   W    T CVVT E+ DD+ + +    G+  +  G        G SAR  D         LH+ +P T G +E V    + R GLS    R  A GLRAPT +PGLFLA  DL  +   G +   WIA HA LGYTP D  + +R+L +D+  L
Sbjct:  380 DSAGLRAALISLFSTENLPHEEVAAGAYVREVAQSLDGAHYPRGGWRAVAAALLPAVEAAGGRVLTRAPPHARVFTEGGRAAGVTL-----------RTGGGEGGGGELRVRVREGGCVVSALGAIETFETLLS----------------------------DDDAKAHGGRF---PAGFGALRAARPRLHLCVGLAGNWDEALDATPADYLQVRDD------GAARAHERYHDQ-----DSEWLRVSFASAKDPERWWSAHTACVVTCELPDDVLRASAAAGGTLSAGAGGSGANAGGGVSARVKDXXXXXXXXXLHEIYPATRGAEEVVEAVLELRPGLSATCARAAAPGLRAPTHVPGLFLASADLCENSFAGGLDAAWIATHAVLGYTPFDFLILKRTLLSDLETL 736          
BLAST of mRNA_S-dermatodea_contig10315.236.1 vs. uniprot
Match: B5YLS3_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YLS3_THAPS)

HSP 1 Score: 110 bits (276), Expect = 6.140e-22
Identity = 120/442 (27.15%), Postives = 192/442 (43.44%), Query Frame = 1
Query:   97 SENLPPQRVSCAVLMGHTS--DSWGGLYHARGGFRVLAEGLVESIRASGGRVLTRARTTSVLVRD-GRAAGVSVVRETSTSTPTPTLGG-GSKGGVEILLSPDAGSSVISSIGVIDTFRFLVPXXXXXXDASSGEKTAGVAPAAGGEGAAVDDPVSAKSGEKGLEPAGFRSLRAARPRVHLCVGLRGNWLEDFDGTGAYFHHVRNSTI-----DDGGGGERFNXXXXDRLDPGASRD---------------------------------------WYRISFGEPKDSSGWGK--DTTTCVVTAEMGDDMTKLAIDGAGSTDSPIGPLDYTV-QTGRSARDRMRERLLRRLHQEFPQTEGCDEFVVMTEQPRAGLSHGPERYLAEGLRAPTKLPGLFLAGEDLTIS-GMEGAIMGGWIAAHAALGYTPTDMFLRRRSLAADI 1266
            +ENL P + S A  + +     S  G  +  GG R L   L   I  +GGRV++      +L     +       ++  +  P P   G   + G+E+ +S D G+ V+S +G+I TF  LV         S   +TA                       +G+ PAG  +L   RP + + + L+GN  +D + TGA ++ + N+T+     D   G  +F     D  + GAS +                                       W ++SF   KD S   +  D +TCVVT E  DD  ++             P  Y+V + G   R+R+R+R+L+ L + FPQ +G  E V +    R+GL+H   R+  +G R  T  PGL++ G DLT+     GAI+GGW+AA+A +GY+  D     +++ +D+
Sbjct:  550 NENLSPDKTSMAAHVTNVCAMTSTEGYAYPVGGPRALCHALTSVIEQNGGRVVSGVLLQELLFEKLEKKEPKEETKDGESKEPKPRCKGIRLENGLELSVS-DKGA-VVSFMGMIPTFLQLV---------SPDVRTA-----------------------EGV-PAGLPALEERRPLMRVMISLKGN-KDDLNLTGADWYRLPNATLPRDELDPMTGQVKFGTIGVDDDNTGASEELILGEATDETEATTSHTRGKRNKAATSKAPRSKFTSGVSWMKVSFPSAKDPSWQDRHGDVSTCVVTVEADDDFVQMF---------DTKPKIYSVLKAGNGERERLRDRVLKDLLETFPQLQGQLETVQICGPVRSGLTHNGPRFAIKGNRPETPYPGLYIGGADLTVGDSFSGAIVGGWLAANAIMGYSFMDHMYLGKNITSDL 946          
BLAST of mRNA_S-dermatodea_contig10315.236.1 vs. uniprot
Match: A0A7S3YMN5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YMN5_HETAK)

HSP 1 Score: 97.1 bits (240), Expect = 1.460e-19
Identity = 52/103 (50.49%), Postives = 69/103 (66.99%), Query Frame = 1
Query:  967 RMRERLLRRLHQEFPQTEGCDEFVVMTEQPRAGLSHGPERYLAEGLRAPTKLPGLFLAGEDLTISG---MEGAIMGGWIAAHAALGYTPTDMFLRRRSLAADI 1266
            R+ +R L  L + FP+ +G DEF+ ++   R GLSH   RY  + LRA T +PGLFL G DL   G   +EGA+ GGW+AAHAA G+T +D+FLRRRSL  D+
Sbjct:   94 RLGDRGLALLRRHFPEVQGQDEFLKVSRPFRPGLSHTTARYQCDDLRAYTCIPGLFLGGADLVGGGNLSLEGAVQGGWLAAHAATGHTFSDLFLRRRSLPEDL 196          
BLAST of mRNA_S-dermatodea_contig10315.236.1 vs. uniprot
Match: F0Y7V0_AURAN (GMC_OxRdtase_N domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y7V0_AURAN)

HSP 1 Score: 70.1 bits (170), Expect = 4.760e-9
Identity = 104/425 (24.47%), Postives = 160/425 (37.65%), Query Frame = 1
Query:   49 NDDLEAAQAALCALFRSENLPPQRVSCAVLMGHTSDSWGGLYHARGGFRVLAEGLVESIRASGGRVLTRARTTSVLVRD-GRAAGVSVVRETSTSTPTPTLGGGSKGGVEILLSPDAGSSVISSIGVIDTFRFLVPXXXXXXDASSGEKTAGVAPAAGGEGAAVDDPVSAKSGEKGLEP----AGFRSLRAARPRVHLCVGLRGNWLEDFDGTGAYFHHVRNSTIDDGGGGERFNXXXXDRLDPGASRDWYRISFGEPKDSSGWGKDTTTCVVTAEMGDDMTKLAIDGAGSTDSPIGPLDYTVQTGRSARDRMRERLLRRLHQEFPQTEGCDEFV----------VMTEQPRAGLSHGPERYLAEGLRA----PTKLPGLFLAGEDLTISGMEGAIMGGWIAAHAALGYTPTDMFLRRRSLAADI 1266
            +DDL A    L     +  L P   S  V  G  S   GG Y   GG + +A+ LV ++ A GGRVL RA    V++ D GRA GV +  +                  +++L   A   V+S+ G + T + L        + +                 A+ +P S    E+G+       GF +  A      L +  +  W     G  A         + DG            R D G     Y + F   KD S       TC + +E  +   +   D          P     +   + +    ER+L +L++ FPQ EG   F            +      GL+   +RY +  + A      ++PGLF+ G+D+T +G  GA+M G + A A LGY   D+ +  R L  D+
Sbjct:  222 DDDLVAT---LTGYAGNYGLAPSEASFFVHAGVASHYMGGAYVPVGGPQAIADALVATVNAYGGRVLMRAAVERVVLSDAGRAVGVQLEDDD-----------------KVIL---AKRGVVSAAGCLQTLKLLPDAARREVEWAD----------------AILNPASEDFVEQGISHLSLFVGFDTTAA-----ELDLPSQNQWCVSGSGETAKAWRA----LPDGAAAAA-------RGDLGT----YFVGFPSAKDPSARASKPATCSIISETNEAWWRPWADS---------PAHKRPEAYDALKKAFEERMLAKLYELFPQCEGRVVFSKLGTSLTNDHYLKRAASYGLAPTTKRYASPKMAAIRPEVAEIPGLFITGQDVTTAGWAGALMSGVMTAMAILGYGFLDLAVFNRDLVTDL 578          
BLAST of mRNA_S-dermatodea_contig10315.236.1 vs. uniprot
Match: A0A4R7K3P3_9GAMM (All-trans-retinol 13,14-reductase n=1 Tax=Halospina denitrificans TaxID=332522 RepID=A0A4R7K3P3_9GAMM)

HSP 1 Score: 65.5 bits (158), Expect = 1.310e-7
Identity = 91/368 (24.73%), Postives = 144/368 (39.13%), Query Frame = 1
Query:  166 GLYHARGGFRVLAEGLVESIRASGGRVLTRARTTSVLVRDGRAAGVSVVRETSTSTPTPTLGGGSKGGVEILLSPDAGSSVISSIGVIDTFRFLVPXXXXXXDASSGEKTAGVAPAAGGEGAAVDDPVSAKSGEKGLEPAGFRSLRAARPRVHLCVGLRGNWLE-DFDGTGAYFHHVRNSTIDDGGGGERFNXXXXDRLDPGASRDWYRISFGEPKD---SSGWGKDTTTCVVTAEMGDDMTKLAIDGAGSTDSPIGPLDYTVQTGRSARDRMRERLLRRLHQEFPQTEGCDEFVVMTEQPRA-------------GLSHGPERYLAEGLRAPTKLPGLFLAGEDLTISGMEGAIMGGWIAAHAALGY 1218
            G Y+  GG   +A+ ++  I+ SGG V T A  T +LV  G+A GV +       +P                       VIS  G+I+TF  L+P                                  ++ EK   P     +  + P + L +GL+G   E +   T  + +     + D  G  ERF                  +SF   KD    + W   T+T  V A    +M +   D   ST    G  DY  +     +  + +RL+  ++++ PQ     ++V  T  P +             GL H PER+    LR  TK+PGL+L G+D+   G+ GA++GG++ + + LGY
Sbjct:  239 GGYYPVGGASEMAKTIIPVIQQSGGEVFTYADVTEILVEKGKAVGVRMADGEEIRSP----------------------KVISGAGIINTFEELLPR---------------------------------ETAEKIGYPKQREHVNPSMPHIGLYIGLKGTPSELNLPKTNFWVY----PSADHDGNVERFLENTDSEFPV------VYLSFPAAKDPDYQNRW-PGTSTIEVVAPTTYEMFEPWKD---STWGKRGE-DYEAR-----KQAITDRLMEVVYEKLPQVRDKVDYVE-TSTPLSTAWFCRYSRGELYGLDHTPERFDQSWLRPKTKVPGLYLTGQDILTCGVVGAMIGGFVTSLSILGY 530          
BLAST of mRNA_S-dermatodea_contig10315.236.1 vs. uniprot
Match: A0A260A7S9_9NOCA (NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Rhodococcus sp. 06-412-2C TaxID=2022487 RepID=A0A260A7S9_9NOCA)

HSP 1 Score: 63.9 bits (154), Expect = 3.860e-7
Identity = 115/407 (28.26%), Postives = 150/407 (36.86%), Query Frame = 1
Query:   79 LCALFRSENLPPQRVSCAVLMGHTSDSWGGLYHARGGFRVLAEGLVESIRASGGRVLTRARTTSV-LVRDGRAAGVSVVRETSTSTPTPTLGGGSKGGVEILLSPDAGSSVISSIGVIDTFRFLVPXXXXXXDASSGEKTAGVAPAAGGEGAAVDDPVSAKSGEKGLE-PAGFRSLRAARPRVHLCVGL-RGN-WLEDFDGTGAYFHHVRNSTIDDGGGGERFNXXXXDRLDPGASRDWYRISFGEPKDSSGWGKDTTTCVVTAEMGDDMTKLAIDGAGSTDSPIG-PLDYTVQTGRSA-----RDRMRERLLRRLHQEFPQTEGCDEFVVMTEQPRA-------------GLSHGPERYLAEGLRAPTKLPGLFLAGEDLTISGMEGAIMGGWIAAHAALGYTPTD 1230
            LC  F   +LPP   S  V         GG     GG   LAE +V  I A+GG VL  A   SV L   G A GV +        P                      +VIS  GV+ T   L+P                          AVD  +     + G   P    +L  A P   L  GL RGN W+              +S ID  G    F     DR  P      Y ++F   KD S W         +A   D   +  ID AG T   +  P   T    RS      +DR++  LL ++++  PQ  G  +   M   P +              L+  PERY  +GLRA + +P LF  G+D++ SG+ GA+ GG IAA A LG    D
Sbjct:  200 LCGHFGDYSLPPGDASFGVHAMLIRHYIGGASFPVGGSGRLAETIVPVIEAAGGAVLISAEVESVSLDGSGAACGVEMTDGRRFLAP----------------------AVISDAGVVPTLTRLIPEH------------------------AVDHELLESLRDVGPSLPWVVLNLGVAEPDQAL--GLPRGNFWIHG------------SSDID--GSISEFQTHPSDRSMP-----LYFLTFPSAKDPS-W---------SARHPD---RATIDIAGVTSWELWKPFLNTQWMNRSEEYDLLKDRLKSELLAQVYRFCPQLRGKIDHAEMA-TPLSFNHFLGREFGDFMSLAPSPERYAVQGLRAHSSIPNLFFGGQDVSASGVVGAVQGGVIAASAVLGRNVLD 525          
BLAST of mRNA_S-dermatodea_contig10315.236.1 vs. uniprot
Match: A0A6P1T7D3_9GAMM (FAD-dependent oxidoreductase n=1 Tax=Microbulbifer hydrolyticus TaxID=48074 RepID=A0A6P1T7D3_9GAMM)

HSP 1 Score: 63.9 bits (154), Expect = 4.110e-7
Identity = 92/393 (23.41%), Postives = 142/393 (36.13%), Query Frame = 1
Query:  160 WGGLYHARGGFRVLAEGLVESIRASGGRVLTRARTTSVLVRDGRAAGVSVVRETSTSTPTPTLGGGSKGGVEILLSPDAGSSVISSIGVIDTFRFLVPXXXXXXDASSGEKTAGVAPAAGGEGAAVDDPVSAKSGEKGLEPAGF-RSLRAARPRV-HLC--VGLRGN-----------WL---EDFDGTGAYFHHVRNSTID----------DGGGGERFNXXXXDRLDPGASRDWYRISFGEPKDSSGWGKDTTTCVVTAEMGDDMTKLAIDGAGSTDSPIGPLDYTVQTGRSARDRMRERLLRRLHQEFPQTEGCDEFVVMT---------EQPRA---GLSHGPERYLAEGLRAPTKLPGLFLAGEDLTISGMEGAIMGGWIAAHAALGY 1218
            +GG Y   G  R +AE ++  I+ SGG V T AR  ++L+   R  GV +   T  + P                      +VIS+ GV +TF  L+P                                     +     AG+ R+L+A +P + HLC  +GLR             WL    D++   A F   +N+ I           D     R+       +   A  +W+     E      WGK           G++   L                         + +  ERLL  L + FPQ  G  ++  ++         E  R    GL H P+R+    LR  T++PGL+L G+D+   G+ GA+ GG + A + LG+
Sbjct:  247 YGGYYPVGGASR-MAETIIPQIQKSGGEVFTYARVDTLLLDGARVTGVRMADGTEITAP----------------------AVISNAGVFNTFEKLLP-------------------------------------QSAASAAGYHRALKAVKPSMSHLCLYIGLRSTAAELRLPKTNYWLYPSADYEADTAAFLGDQNAEIPLVYISFPSAKDPDFERRYPGRATIEIVAPAKYEWF-----EHWQQETWGK----------RGEEYEAL-------------------------KQQFSERLLEHLFKHFPQLRGQVDYCELSTPLSTRHFCEYRRGEIYGLDHDPDRFAQTWLRPKTRIPGLYLTGQDIMSCGVAGAMFGGLVTAQSLLGW 539          
BLAST of mRNA_S-dermatodea_contig10315.236.1 vs. uniprot
Match: UPI001A8EB024 (NAD(P)/FAD-dependent oxidoreductase n=2 Tax=Microbulbifer TaxID=48073 RepID=UPI001A8EB024)

HSP 1 Score: 63.9 bits (154), Expect = 4.220e-7
Identity = 96/385 (24.94%), Postives = 143/385 (37.14%), Query Frame = 1
Query:  160 WGGLYHARGGFRVLAEGLVESIRASGGRVLTRARTTSVLVRDGRAAGVSVVRETSTSTPTPTLGGGSKGGVEILLSPDAGSSVISSIGVIDTFRFLVPXXXXXXDASSGEKTAGVAPAAGGEGAAVDDPVSAKSGEKGLEPAGF-RSLRAARPRV-HLC--VGLRGNWLE-DFDGTGAYFHHVRNSTIDDGGGGERFNXXXXDRLDPGASRDWYRISFGEPKDSSGW----GKDTTTCVVTAEMG--DDMTKLAIDGAGSTDSPIGPLDYTVQTGRSARDRMRERLLRRLHQEFPQTEG----CD--------EFVVMTEQPRAGLSHGPERYLAEGLRAPTKLPGLFLAGEDLTISGMEGAIMGGWIAAHAALGYTPTDMFLRR 1245
            +GG Y+  GG   +AE ++  I+ +GG V T AR  ++L+   R  GV +   T    P                      +VIS+ GV +TF  L+P                                     E     AG+ R L+  +P + HLC  +GLR    E     T  + +   +   D     E F        DPGA      ISF   KD        G+ T   V  A+    +   +      G+        DY        + +  ERLL  L++ F Q  G    C+         F   T+    GL+H P R+    LR  T++PGL+L G+D+   G+ GA+  G + A + LG+      +RR
Sbjct:  271 YGG-YYPVGGASKMAETIIPQIQKTGGEVFTYARVETLLLDGARVTGVRMEDGTEIFAP----------------------AVISNAGVFNTFEKLLP-------------------------------------ESAASAAGYPRQLQTVQPSMSHLCLYIGLRKTAAELGLPKTNYWLYPSPDYQADT----EAF------LQDPGAEIPLVYISFPSAKDPEFENRYPGRATIEVVAPAQYAWFERWQEKTWGKRGA--------DYEA-----LKQQFSERLLAHLYRHFSQLRGQIDYCELSTPLSTRHFCAYTQGEIYGLNHDPARFAQTWLRPKTRVPGLYLTGQDIMSCGVAGAMFAGLVTAQSLLGWRRGGALMRR 572          
BLAST of mRNA_S-dermatodea_contig10315.236.1 vs. uniprot
Match: A0A2E5ML44_9ALTE (FAD-dependent oxidoreductase n=1 Tax=Alteromonadaceae bacterium TaxID=1916082 RepID=A0A2E5ML44_9ALTE)

HSP 1 Score: 63.5 bits (153), Expect = 5.320e-7
Identity = 97/363 (26.72%), Postives = 139/363 (38.29%), Query Frame = 1
Query:  166 GLYHARGGFRVLAEGLVESIRASGGRVLTRARTTSVLVRDGRAAGVSVVRETSTSTPTPTLGGGSKGGVEILLSPDAGSSVISSIGVIDTFRFLVPXXXXXXDASSGEKTAGVAPAAGGEGAAVDDPVSAKSGEKGLEPAGFRSLRAARPRVHLCVGLRGNWLE-DFDGTGAYF----HHVRNSTIDDGGGGERFNXXXXDRLDPGASRDWYRISFGEPKDSSGWGK--DTTTCVVTAEMGDDM-TKLAIDGAGSTDSPIGPLDYTVQTGRSARDRMRERLLRRLHQEFPQTEG------------CDEFVVMTEQPRAGLSHGPERYLAEGLRAPTKLPGLFLAGEDLTISGMEGAIMGGWI 1194
            G Y+  GG   +A  ++  I+  GG V T A  T++LV +GRA GV +                   G EI         +IS+ GVI+TF  L+P                         AAV      KSG     P   ++++ +   + L +G +G   E     T  +     HH RN         ERF     D  D  +      ISF   KD S   +  DT T  + A    DM  +   D  G        L   V           +RLL +L+++ PQ  G             D F   +     GL H PER+    LR  T++PGL+L G+D+   G+ GA++GG +
Sbjct:  247 GGYYPVGGASEMANTIIPVIQQGGGDVFTYADVTNILVENGRACGVRMAD-----------------GHEI-----RSELIISNAGVINTFETLLPE------------------------AAVR-----KSGY----PRTRQTIQPSMSHIGLYIGFKGTAAELGLPKTNFWIYPDEHHDRNV--------ERF----LDNTD--SEFPVVYISFPSAKDPSYLSRYPDTATVEIVAPTTYDMFAQWKDDTWGKRGEEYEQLKQVVT----------DRLLEKLYEKLPQLRGKVDYVEASTPLSTDWFCRYSRGEIYGLDHTPERFDQTWLRPKTRIPGLYLTGQDILTCGVVGAMIGGLV 530          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10315.236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K335_9PHAE6.680e-16963.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z712_9STRA4.380e-5735.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
B5YLS3_THAPS6.140e-2227.15Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
A0A7S3YMN5_HETAK1.460e-1950.49Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
F0Y7V0_AURAN4.760e-924.47GMC_OxRdtase_N domain-containing protein n=1 Tax=A... [more]
A0A4R7K3P3_9GAMM1.310e-724.73All-trans-retinol 13,14-reductase n=1 Tax=Halospin... [more]
A0A260A7S9_9NOCA3.860e-728.26NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Rhodoc... [more]
A0A6P1T7D3_9GAMM4.110e-723.41FAD-dependent oxidoreductase n=1 Tax=Microbulbifer... [more]
UPI001A8EB0244.220e-724.94NAD(P)/FAD-dependent oxidoreductase n=2 Tax=Microb... [more]
A0A2E5ML44_9ALTE5.320e-726.72FAD-dependent oxidoreductase n=1 Tax=Alteromonadac... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10315contigS-dermatodea_contig10315:6..7592 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.5
Seed ortholog evalue5.9e-23
Seed eggNOG ortholog35128.Thaps25361
EggNOG free text desc.all-trans-retinol 13,14-reductase activity
EggNOG OGs2XAJ9@2836,COG1233@1,KOG4254@2759
COG Functional cat.H
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons7
Model size1526
Cds size1281
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924151.360105-UTR-S-dermatodea_contig10315:5..2381622924151.360105-UTR-S-dermatodea_contig10315:5..238Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10315 6..238 -
1694079052.7087216-UTR-S-dermatodea_contig10315:5..2381694079052.7087216-UTR-S-dermatodea_contig10315:5..238Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10315 6..238 -
1622924151.4372444-UTR-S-dermatodea_contig10315:7580..75921622924151.4372444-UTR-S-dermatodea_contig10315:7580..7592Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10315 7581..7592 -
1694079052.8065007-UTR-S-dermatodea_contig10315:7580..75921694079052.8065007-UTR-S-dermatodea_contig10315:7580..7592Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10315 7581..7592 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924151.3710334-CDS-S-dermatodea_contig10315:238..3441622924151.3710334-CDS-S-dermatodea_contig10315:238..344Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10315 239..344 -
1694079052.722941-CDS-S-dermatodea_contig10315:238..3441694079052.722941-CDS-S-dermatodea_contig10315:238..344Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10315 239..344 -
1622924151.3799284-CDS-S-dermatodea_contig10315:1402..15691622924151.3799284-CDS-S-dermatodea_contig10315:1402..1569Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10315 1403..1569 -
1694079052.7340791-CDS-S-dermatodea_contig10315:1402..15691694079052.7340791-CDS-S-dermatodea_contig10315:1402..1569Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10315 1403..1569 -
1622924151.3883023-CDS-S-dermatodea_contig10315:2332..24811622924151.3883023-CDS-S-dermatodea_contig10315:2332..2481Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10315 2333..2481 -
1694079052.743268-CDS-S-dermatodea_contig10315:2332..24811694079052.743268-CDS-S-dermatodea_contig10315:2332..2481Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10315 2333..2481 -
1622924151.3990183-CDS-S-dermatodea_contig10315:3908..40891622924151.3990183-CDS-S-dermatodea_contig10315:3908..4089Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10315 3909..4089 -
1694079052.752447-CDS-S-dermatodea_contig10315:3908..40891694079052.752447-CDS-S-dermatodea_contig10315:3908..4089Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10315 3909..4089 -
1622924151.411544-CDS-S-dermatodea_contig10315:6121..66171622924151.411544-CDS-S-dermatodea_contig10315:6121..6617Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10315 6122..6617 -
1694079052.7618418-CDS-S-dermatodea_contig10315:6121..66171694079052.7618418-CDS-S-dermatodea_contig10315:6121..6617Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10315 6122..6617 -
1622924151.420873-CDS-S-dermatodea_contig10315:7090..71641622924151.420873-CDS-S-dermatodea_contig10315:7090..7164Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10315 7091..7164 -
1694079052.7776623-CDS-S-dermatodea_contig10315:7090..71641694079052.7776623-CDS-S-dermatodea_contig10315:7090..7164Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10315 7091..7164 -
1622924151.4293694-CDS-S-dermatodea_contig10315:7472..75801622924151.4293694-CDS-S-dermatodea_contig10315:7472..7580Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10315 7473..7580 -
1694079052.7942665-CDS-S-dermatodea_contig10315:7472..75801694079052.7942665-CDS-S-dermatodea_contig10315:7472..7580Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10315 7473..7580 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10315.236.1prot_S-dermatodea_contig10315.236.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10315 239..7580 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10315.236.1

>prot_S-dermatodea_contig10315.236.1 ID=prot_S-dermatodea_contig10315.236.1|Name=mRNA_S-dermatodea_contig10315.236.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=427bp
MLGAMSKVQPDANDDLEAAQAALCALFRSENLPPQRVSCAVLMGHTSDSW
GGLYHARGGFRVLAEGLVESIRASGGRVLTRARTTSVLVRDGRAAGVSVV
RETSTSTPTPTLGGGSKGGVEILLSPDAGSSVISSIGVIDTFRFLVPPPP
PPGDASSGEKTAGVAPAAGGEGAAVDDPVSAKSGEKGLEPAGFRSLRAAR
PRVHLCVGLRGNWLEDFDGTGAYFHHVRNSTIDDGGGGERFNGGGGDRLD
PGASRDWYRISFGEPKDSSGWGKDTTTCVVTAEMGDDMTKLAIDGAGSTD
SPIGPLDYTVQTGRSARDRMRERLLRRLHQEFPQTEGCDEFVVMTEQPRA
GLSHGPERYLAEGLRAPTKLPGLFLAGEDLTISGMEGAIMGGWIAAHAAL
GYTPTDMFLRRRSLAADIPNLDKLQQ*
back to top

mRNA from alignment at S-dermatodea_contig10315:6..7592-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10315.236.1 ID=mRNA_S-dermatodea_contig10315.236.1|Name=mRNA_S-dermatodea_contig10315.236.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=7587bp|location=Sequence derived from alignment at S-dermatodea_contig10315:6..7592- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGTGCGAAAGATATGCTGGGCGCGATGTCGAAGGTGCAGCCGGACGCAAA CGATGACCTGGAGGCCGCGCAGGCGGCCCTTTGTGCCCTCTTCAGAAGCG AGAACCTGCCGCCGCAGAGGGTGCGATTGCTCTTTTGCGCGTCTTATTTG TTTTGTCTTGCCTGTGCTATCATACTACAATTATGTGCGTATGTTTCAGT ACCCACGGGCTGCTGTATCCTATGTACGTAGCGTATTTCGCGTGTCTTGC CACAGCATAGACAAAAGACGCGCGGCTGTCGCGATTCGCTCGTTTGGCCA TGCAGATGAGTAGCAGCGCGGCTCGTGTCATGGTTCGCCTTGGTCTCTCT TGCGTCGTCGTCCAATGTGCCTGCCGCTCGACCCTCCTGCGCCGAACGAT TTCATTTCTCCTGGCCCGTTACTCGTAGGTGTCGTGCGCAGTTTTGATGG GACACACGAGCGATTCCTGGGGAGGCCTATATCACGCTCGGGGGGGTTTC AGGTAAGTGTTGTGGCGGCGAGCGACGGGTGGGGGAGGGGGCAAAGGTGG GGAGTAAGGCGATGCATCGGCGTCTCTGGCCACTTTCGTGGTGTGCGAAC AGCAGTACCGGTAGGACATGTAGTCTTCAACAGCCTAGGTTTATTGGCCC TTCTCTCCGAACGACCAGTTGGCCACGCACTTCGGAACGTCTTCGTGGCA CGAGCTGATTCTGTCCCGGCACTCCATACATATGGCCACCTCAAGCCCAG TCGCGACAAACACCAGAAACGATTATTAAGATATTTCGCCCGTAGCATCC AATCTACGGAAGCGAGTCCTTCCGCACAGGGCAAGGAAATCGCAACACCT CCATTCTACTCAATAAATTATTGATATTTTCACCGGCAAGTGAAAAGCAG ACATCTCTGCCCCACACGAATCCGATAAATGAACGATAAAACCAGCAAAT CCGCCCCGTTCCAAACAAATCGCAGGGTGCTCGCGGAGGGGCTGGTAGAA AGCATCCGCGCCTCGGGAGGTCGGGTCCTTACCCGCGCGCGGACAACCTC CGTCCTCGTACGAGACGGCCGAGCCGCGGGCGTCTCCGTCGTCCGAGAAA CGTCAACTTCAACTCCAACCCCAACCTTAGGTGGAGGTTCCAAGGGTGGG GTCGAGATCCTCCTCTCTCCCGACGCTGGGAGTTCCGTGATCTCATCGAT AGGCGTTATCGACACGTTCCGCTTCCTCGTGCCCCCACCGCCGCCGCCGG GTGACGCTAGTAGCGGGGAAAAGACAGCGGGGGTTGCGCCGGCTGCGGGG GGCGAGGGAGCCGCCGTAGACGATCCTGTGTCGGCGAAAAGTGGCGAGAA AGGGCTGGAGCCGGCGGGCTTCAGGAGTCTACGGGCGGCGCGTCCACGGG TACACTTGTGTGTGGGGCTAAGGGGTAACTGGTTGGAGGACTTCGATGGG ACTGGCGCTTACTTCCACCATGTGAGGTCACGGGGAATAGGAGGGGGGAG GGAAGGGGAGGGGAGCGGGGGGGAAAGGGGCGGGGGGGGGGGTCCGCCCC CGAGTCTTGGACATGTGCTTTTAGGATTGGATTTGTGGGAGTTTAGGCGT TTTTGCGACAGTTTGGCGTACTTTTTTGTGGTTCCGCCAGCGTTTGTTTG TATGTCTGGCTCTTGGTACTATGTGCGTACATCGTTGCTGTATTGCGGGT GTCCGCCGACTTTGGTTTGTCGGGGTCCGATCACGCTTTCGGGGTTCTTT GGGCGAGTCCCTGTCATGCTGCCAACAGAGTTTCGAGTGTCGTCCTACCG CGTGTCTGTCCGGGCTATCGCGATGGCTTCCTGGCTTTTACTCCTTCTGG GACTTTTTCGAGTCTGTTTTCGGCATACCCGTATTTGGCAATGAAGAGTG ATCGAACGGTGACTGCTCCTTACCGTAGTAGCTGTCGACACGTGATGCTT AGCTCGCATGCACGGTGCGCTTTTGCGTGTAGCCGTCAGTAACCTCAATG CAATTCGTGTACCCCTATTATGGTACACAAGCATAGCGGAGGTACTCAGT AACCAGGACCAAATCGTCTTTATCTTATTCATTTATACAAGAGTGAACCA TTCTTAATTGTGATTTAGTGTAGACCACTGCGGACCACAACACTAAACTC CTACTTCGAAGTATACGATTTTGAGGCCGATGTTTGTACTAAACAGACAC CACGGGCGACAGCCGTGGCTTGCAACTAGTTACTAATTAATACCGCTTTT GAGCGTTTTTTGCATACTATTTCCTATACGATTTTGAGGCCGATTTTATA CGCTCTCTCGTATACGATTTCGAGGCCAAACAACGTGGATGTTTGTGTTA AACACAGACGTTAAAAAGAGTGGTGGGATTTTTACGTCACGGGCGTAGCC GTCCGTGGCTACCTACTTGTACAATACTGTAATAGTTCCTGCTGAATATA GCGTACTTGTATTCGAATCTTGTTTTTTTCAAACTTTGGCCAGAACACCT TGTAAGAAAGTTTGTAGGTATATTGACATTTCAGGCTGGAAGATCGATCG CAGATAGGTGGTGTATGTAAGGCCAGAGCAGATAGGTGTATGGTTTGTTT TGTTGGGCGTACTGTTGGACGCATTTTGTCCTGATTACTGTGTGCCTCTG TGCGTAGTAGTGAAGGTATTCGGCGAAAACCGTTTTTATCAGTCCCTTAA GAGGGTGAGTGTTGGTCAAATACCAGTATAATAGTAACTTTTGGAACCAT TCGTACACCCGGGCCCACAGCCCACTCGCAAGGCGGTAATGTATGGTAGT AGTTTGTCGAAACTCCACTCCAAAAGCATCTGTCTGTGTCGCGGCTGAAA ACAGCCACCTTACGTGACTAAACCAAACCCCGACACAGAAAAAGTGGACA TTTTACATACCCCTAAAAAAATAAAGATTTCAGAAACATAGAGCGAGCGT TGGGGTCAAACCTTCCAAACCTTCCTTTTCAAGAGGGAAGATGGTCCAAG CTACACCTATGGAGGCTCAGTTGTTACATATGATGCTATGGTGTCTTATC ATGTATGATGTTACTCCGGAGTATATGGTTATCTTGTCCTACACGACATG AGTCGTTGTCCTGACTATATCCTGGTGCCCCCCCGCAAACACCCAAACAC CCAATCAACGCCGCTGTAAGGGCGAAAATCTTTGTGGTTGCCTCTACATG TTTGTAATATTTTAGCAGTCCCCCAAGTTCCGAGGCATTTCCCCTCTGTT TCAGAGAGAGTCACCGTCAAATTATTCTTAATACTTACCTGGTACTATAT ATTGGTAATTTACGTACTGGTAGTTTCTTTTTCGGTCTCTCGGGGTCTCA TCTGACCACGAGGGAACGGTATCGGCAACCGTTGGTGGGCAGATCGGCTG TTTGTGTGATGACCGATCAAATCAATCAAATCAATCAAATCAATCAATCA ATCCATGCTTAATATTTTACTGGACCGCCGATATTCAACGACAAACTCTC CAGGTTCGGAACTCCACGATCGACGACGGTGGCGGCGGCGAGCGCTTCAA CGGAGGGGGGGGCGACCGCCTCGATCCCGGCGCTTCTAGGGACTGGTACC GGATAAGCTTCGGGGAGCCCAAGGACTCAAGCGGCTGGGGCAAGGATACG ACTACCTGCGTTGTCACGGCCGAGATGGGAGATGGTGAGAGATGGCACAC ACGTAGTAGTTGATTGGTTGGTTGGTTGGTTGGTTGGTTGGTTGGTTGAT TGATTGCTTGATTGGTTGGTTGGTTGATTTCTTTATTTGGTTGGTTGGTT GATTGATTGGTTGGTTGGTTGGTTGGTTGGTTGATTCATTGCTTCATTGA TTGGTTGGTTGGTTGATGTATTGATTTGATTGGTTGATTGGTTAATTGAT TGATTGATTGATTGCTTGATTGGTTGGTTGGTTGGTTGGTTGTTTGATTG GTTGATTGATTGATTGATTTGATTGGTTGGTTGATTGATTAATTGCTTCA TTGATTGGTTGGTTGGTTGATTTATTGACTTGATTGGTTGGTTGGTTGGT TGATTGATTGCTTTTAATTGATTGGTTGGTTGGTTGGTTGGTTGATTCAT TGCTTCATTGATTCGTTGGATGATTCATTTATTGGTTGGTTGGTTGATTG ACTGATTGATTGGTTGATTGATTGATTGATTGATTGATTGCTTACCACAC TTACAACTGACCGGCCCACCAATAGTTGGTGGTCCTGCTCGTGGTCAGGT TAGAAATCGATAAATTAACAACAACAAAAAGTTCGGAGTATATCGATATC AGTGTACGAGTAAGTGGCACGGCAATGTGACCCGTAAATGTCGCTTGGTT CCGAATCGAAAAGCAGGCTGACACGACGATGGTCCCGCCCCCCCCCCCCG ACAAGTCCAAGGCGTTGTTTGTTGGAAGAGCTTGTAACCAATACGGTAGC AGCTGGTAGACGGCCTTTCGTATAATAGAGTGTGTGTGCTCCGTTGCTTT ACAAGTATGCGCCCACAGTTGGCTAGGATGTGGCAGAATGTGCCGAACAA CGCGCTTTTGTCGCGGCGCTCCGTGCTATCTATGTACATACCGCGCGCGT CATTTTTTTCGCGCGCGGGCAGCATCTGCGTTTTTTTTTCGCCCGGTTTC CATGGTTACACCCGTCGTGCGAAAAAACCGGGCAGAAGCTGTGCGTGTGT GTTTTTTTTGCCCGGTTTTCGTGATTAAAACCGTCGTTCTCCCCTTCAGC GGCTGCGTTTTTTTTTGCCCGGTTCCATGAGGGCAACCGTCGTGCTATTA TATTAACCCTTTTGGGACTAAAGCTGTTTTCGGGTAACTGTTTGCTATTA TTATTTACCCTTGTGGGACTAAGCCTGGGGACGAAGCCTGTTTTCGGGTA ACTGTTGACTACTGCACCATAATAGCAGACACTTACCCGAAAACAGCCTT AGTCCCAAAAGGGTAAATAGTTTCGACGGGCACAACAACGTGCGACACCT CGCTGCTGGAGTCTCAAGCCGGACCATATACAGTACCTATTGAATACCAT CGGCCGCCGCCGCCGCCGCTGCGTGTGTGTCGCCAACGCTGATTTAAAAA AAAACGAACAGATATGACCAAGCTGGCGATCGACGGCGCGGGCTCTACCG ACTCCCCGATCGGACCCCTTGACTACACGGTGCAGACCGGAAGGTCTGCT AGGGACCGCATGCGAGAGCGGCTGCTGCGGAGGCTGCACCAAGAGTTCCC GCAGACGGAGGTGAGAGGGTTAGGGTTCAGGAGTGGGACGCTGATGGCGG GGGGGGGGGGGGGGGGGGGGGGGATGAGGGAGTAGGACGAGGAGAGGAGN NNNNNNNNNTTCGGCGAGTCGCATGAAGGGTGAGCTGCATCCTGCTAAGA GTGTTCGGCCTAGACCGAACTTTTATCTAGGGACGCTTTGAGAAAAGAGG GAAGGATCGGAGTTTGTTGTTTTTTTCGCGGCGTTTCGTCTGTCTTGGTT CGTTCGTCTCGTTTTAGGTGGAGATGGGTCTTATATTCGCCAGAGTAGTG GGGCATTTGCTCGTATTGTCTCACGAAAAGGGTCGCTTTTTTCGATGGGC TTGCCGTTTTTGCTGGCATGAGAGGGTTGAGGTACAGGCGTTTTCATGTG CTTCAACGCAAACTCCGCCAACTTGGCCCTTTCAAGCATCGCCCTTTTAC GGGCGTGCCGTCATGCTTGGTATTCGTGTTTGCAGTTACATATATATATA TCTAGTGTTTGTAGCGTACCGTTTGTGTCTCGTTTTTATTTCTCGCGTGT CGGAGCCGGCTTGGTTAAATCTTCCAGACGCCGGCAGGAAGCGAAGGGTT ACTCCACTCTGGCGCGCTCGTGGCCTTTCCCCCCAGAGATCTGTACCCAC ACCCCCAAACGAACGTCTACCCCGAGACCGCCCTAGCCGCCGTAGTGGGT ACTCCAACCGCATGTATATGTCACGTATCCCTTAAACCTTGGACCTCCAA CCACCGATACCGTACACCCTCAGGGCTGCGACGAGTTCGTGGTGATGACC GAGCAACCTCGTGCTGGGCTCTCGCACGGACCGGAGCGCTACCTGGCAGA AGGTCTGCGCGCGCCGACCAAACTCCCGGGGCTTTTCTTGGCTGGCGAGG ACCTGACGATAAGCGGGATGGAGGGGGCCATAATGGGAGGGTGAGTGGGG AGACGTTTGGTGTGGGCGGTTTTGCGGCGAAGAGAGACGAGGGGCGGAGG GGGGAGCTTTTATTTTAGGGGGGGGGGGGGGCAAGAAATGTGTAGTAGAA ATAAATATTCTTGGCTCACAAATCACATCAAAGATAGATTACCGGGACAT CGCTCAGAAGAAAGACGCTTGTATCATAACGATATTGTATAACAACATGA AGCCATATATTAATAGTATAATATGCAGCATGTGGATCTCCGTAGGTGTA GCTTGGACCATCTTCTTTTTTGATACGGTGGGATCCCAACGCTCGCTCTG TGTCTTTGAATTGTTTTTTTTAGAGGGGGGGGGTGGGGGGGGGGGGGTCG TTTTGAAGGCTGTGAAAGTTGGGATGGTGCTCGCTCGCCAGGTCTGGTGA TGTAGACGTGCCGAGCTCTGCCGCTCTGTGTAGAACGTTCGGCTACGCTC CTACTTCGAAGTATATGTGCGGTGTGTGCTCTTTGTCGTTGTGCAGTTGC TCCTGTCGGCGAGCGATTAGTAGCTCATCCGGCGTGGTTTTTATGGGTGC GGTTTTCCCCTGTGGCGAGTTTAGAACTAGGACCTGCGGCCCTCGAGGCT TGCTTTTTTTAGTTTATCGGTTGCTCATCCGGCCACGAGCGGGATCGGCA ACCATTGGCGAGCCGGTCGGCTGTATGTGTGATGATCAGTTGATCAATAA ATAGATCAATCTACGACCTGGTCTGCTTTCCCGGTCTTGTGATATATAGT GAGCTCTACTCAACTGTAGTGGGCGGTACACAACGTTGGCCATTGATTGA TTGATTATCACACATATGATACAACCGACCGGCCCGCAGAGCTCTACGTT GTAGCTCTATTGATCGATTGATTGCAAAAGCCCTGCTCATAATTTTAGTT TTCGTTTGCGTGGATACCATGCGAAATGTCATATAATACATAACCCCTCC TCATCGAAATTATAATATTGCCGCTTACCGCAATCCCCGGCGCGCTTGTG GTGTGTGATTAATTTCTGCCGCACGACGCGTTCGATCGAACTTGACAGGT GGATAGCCGCGCACGCCGCCTTGGGTTACACGCCCACCGACATGTTCCTC CGGCGTAGGAGTCTCGCGGCGGACATCCCTAACCTGGACAAGCTACAACA GTAGTAGAGAGTTTTTACAGCTCAGGCATGATCTACAATCAGTTTGTGGT GGTACCCGTTTTGTGCTACAATATTTTCTCTTCGTTTCTTTTTTTTGCTC TCCTTTCGCGGGTGGTGCATGGAGAATCTGTCGATCCCATTGTTTTGAAG TACTTTGGAAGGCTGGTGCGTTGCCCGTGCGGGCCGAGCTTGTCTGTGGC ATTTTCCGATGAAGTGGTGGCCAGGCCAGCCCGCGGG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig10315:6..7592-

>mRNA_S-dermatodea_contig10315.236.1 ID=mRNA_S-dermatodea_contig10315.236.1|Name=mRNA_S-dermatodea_contig10315.236.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2562bp|location=Sequence derived from alignment at S-dermatodea_contig10315:6..7592- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCTGGGCGCGATGTCGAAGGTGCAGCCGGACGCAAACGATGACCTGGA
GGCCGCGCAGGCGGCCCTTTGTGCCCTCTTCAGAAGCGAGAACCTGCCGC
CGCAGAGGATGCTGGGCGCGATGTCGAAGGTGCAGCCGGACGCAAACGAT
GACCTGGAGGCCGCGCAGGCGGCCCTTTGTGCCCTCTTCAGAAGCGAGAA
CCTGCCGCCGCAGAGGGTGTCGTGCGCAGTTTTGATGGGACACACGAGCG
ATTCCTGGGGAGGCCTATATCACGCTCGGGGGGGTTTCAGGTGTCGTGCG
CAGTTTTGATGGGACACACGAGCGATTCCTGGGGAGGCCTATATCACGCT
CGGGGGGGTTTCAGGGTGCTCGCGGAGGGGCTGGTAGAAAGCATCCGCGC
CTCGGGAGGTCGGGTCCTTACCCGCGCGCGGACAACCTCCGTCCTCGTAC
GAGACGGCCGAGCCGCGGGCGTCTCCGTCGTCCGAGAAACGTCAACTTCA
ACTCCAACCCCAACCTTAGGTGGAGGTTCCAAGGGTGGGGTCGAGATCCT
CCTCTCTCCCGACGCTGGGAGTTCCGTGATCTCATCGATAGGCGTTATCG
ACACGTTCCGCTTCCTCGTGCCCCCACCGCCGCCGCCGGGTGACGCTAGT
AGCGGGGAAAAGACAGCGGGGGTTGCGCCGGCTGCGGGGGGCGAGGGAGC
CGCCGTAGACGATCCTGTGTCGGCGAAAAGTGGCGAGAAAGGGCTGGAGC
CGGCGGGCTTCAGGAGTCTACGGGCGGCGCGTCCACGGGTACACTTGTGT
GTGGGGCTAAGGGGTAACTGGTTGGAGGACTTCGATGGGACTGGCGCTTA
CTTCCACCATGGTGCTCGCGGAGGGGCTGGTAGAAAGCATCCGCGCCTCG
GGAGGTCGGGTCCTTACCCGCGCGCGGACAACCTCCGTCCTCGTACGAGA
CGGCCGAGCCGCGGGCGTCTCCGTCGTCCGAGAAACGTCAACTTCAACTC
CAACCCCAACCTTAGGTGGAGGTTCCAAGGGTGGGGTCGAGATCCTCCTC
TCTCCCGACGCTGGGAGTTCCGTGATCTCATCGATAGGCGTTATCGACAC
GTTCCGCTTCCTCGTGCCCCCACCGCCGCCGCCGGGTGACGCTAGTAGCG
GGGAAAAGACAGCGGGGGTTGCGCCGGCTGCGGGGGGCGAGGGAGCCGCC
GTAGACGATCCTGTGTCGGCGAAAAGTGGCGAGAAAGGGCTGGAGCCGGC
GGGCTTCAGGAGTCTACGGGCGGCGCGTCCACGGGTACACTTGTGTGTGG
GGCTAAGGGGTAACTGGTTGGAGGACTTCGATGGGACTGGCGCTTACTTC
CACCATGTTCGGAACTCCACGATCGACGACGGTGGCGGCGGCGAGCGCTT
CAACGGAGGGGGGGGCGACCGCCTCGATCCCGGCGCTTCTAGGGACTGGT
ACCGGATAAGCTTCGGGGAGCCCAAGGACTCAAGCGGCTGGGGCAAGGAT
ACGACTACCTGCGTTGTCACGGCCGAGATGGGAGATGGTTCGGAACTCCA
CGATCGACGACGGTGGCGGCGGCGAGCGCTTCAACGGAGGGGGGGGCGAC
CGCCTCGATCCCGGCGCTTCTAGGGACTGGTACCGGATAAGCTTCGGGGA
GCCCAAGGACTCAAGCGGCTGGGGCAAGGATACGACTACCTGCGTTGTCA
CGGCCGAGATGGGAGATGATATGACCAAGCTGGCGATCGACGGCGCGGGC
TCTACCGACTCCCCGATCGGACCCCTTGACTACACGGTGCAGACCGGAAG
GTCTGCTAGGGACCGCATGCGAGAGCGGCTGCTGCGGAGGCTGCACCAAG
AGTTCCCGCAGACGGAGATATGACCAAGCTGGCGATCGACGGCGCGGGCT
CTACCGACTCCCCGATCGGACCCCTTGACTACACGGTGCAGACCGGAAGG
TCTGCTAGGGACCGCATGCGAGAGCGGCTGCTGCGGAGGCTGCACCAAGA
GTTCCCGCAGACGGAGGGCTGCGACGAGTTCGTGGTGATGACCGAGCAAC
CTCGTGCTGGGCTCTCGCACGGACCGGAGCGCTACCTGGCAGAAGGTCTG
CGCGCGCCGACCAAACTCCCGGGGCTTTTCTTGGCTGGCGAGGACCTGAC
GATAAGCGGGATGGAGGGGGCCATAATGGGAGGGGCTGCGACGAGTTCGT
GGTGATGACCGAGCAACCTCGTGCTGGGCTCTCGCACGGACCGGAGCGCT
ACCTGGCAGAAGGTCTGCGCGCGCCGACCAAACTCCCGGGGCTTTTCTTG
GCTGGCGAGGACCTGACGATAAGCGGGATGGAGGGGGCCATAATGGGAGG
GTGGATAGCCGCGCACGCCGCCTTGGGTTACACGCCCACCGACATGTTCC
TCCGGCGTAGGAGTCTCGCGGCGGACATCCCTAACCTGGACAAGCTACAA
CAGTAGGTGGATAGCCGCGCACGCCGCCTTGGGTTACACGCCCACCGACA
TGTTCCTCCGGCGTAGGAGTCTCGCGGCGGACATCCCTAACCTGGACAAG
CTACAACAGTAG
back to top