mRNA_S-dermatodea_contig1030.230.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1030.230.1
Unique NamemRNA_S-dermatodea_contig1030.230.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1030.230.1 vs. uniprot
Match: D7G834_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G834_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 7.600e-49
Identity = 73/85 (85.88%), Postives = 80/85 (94.12%), Query Frame = 1 
Query:    1 QVDISNMDVLFCYSSSFPGYGDLLTELSYTLGHKLRPGAQVITTDRRLVSDGPWEFSLLGEREGPNSETGGKSTAYLWEVVKSAL 255
            QV IS++DVLFCYSSSFP +GDLLTE SYTLGHKL+PGAQVITTDRRLVSDGPWEF+LLGEREG NSETGGKS AY+WEVV+SAL
Sbjct:    3 QVGISDIDVLFCYSSSFPAFGDLLTEFSYTLGHKLQPGAQVITTDRRLVSDGPWEFALLGEREGRNSETGGKSIAYIWEVVRSAL 87
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BLAST of mRNA_S-dermatodea_contig1030.230.1 vs. uniprot
Match: A0A6H5LAT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAT6_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 5.230e-47
Identity = 74/85 (87.06%), Postives = 80/85 (94.12%), Query Frame = 1 
Query:    1 QVDISNMDVLFCYSSSFPGYGDLLTELSYTLGHKLRPGAQVITTDRRLVSDGPWEFSLLGEREGPNSETGGKSTAYLWEVVKSAL 255
             VDIS++DVLFCYSSSFP +GDLLTE SYTLGHKLRPGAQVITTDRRLVSDGPWEF+LLGEREG NSETGGKS AY+WEVV+SAL
Sbjct:  218 DVDISDIDVLFCYSSSFPAFGDLLTEFSYTLGHKLRPGAQVITTDRRLVSDGPWEFALLGEREGRNSETGGKSIAYIWEVVRSAL 302
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BLAST of mRNA_S-dermatodea_contig1030.230.1 vs. uniprot
Match: L1JW98_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JW98_GUITC)

HSP 1 Score: 104 bits (259), Expect = 1.510e-27
Identity = 48/83 (57.83%), Postives = 64/83 (77.11%), Query Frame = 1 
Query:   10 ISNMDVLFCYSSSFPGYGD-LLTELSYTLGHKLRPGAQVITTDRRLVSDGPWEFSLLGEREGPNSETGGKSTAYLWEVVKSAL 255
            ++++DV FCYS++F  +G   L +LSYTLGH L+PG++VIT D+ LVSDGPWEF LL   +G N E GG ST Y+W+VVKSA+
Sbjct:    1 LNDIDVCFCYSTAFSTFGGPYLAQLSYTLGHSLKPGSRVITVDKMLVSDGPWEFQLLHSIDGKNEEVGG-STGYIWKVVKSAV 82
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BLAST of mRNA_S-dermatodea_contig1030.230.1 vs. uniprot
Match: A0A835Z2B1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2B1_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 6.220e-24
Identity = 46/79 (58.23%), Postives = 58/79 (73.42%), Query Frame = 1 
Query:   22 DVLFCYSSSFPGYGDLLTELSYTLGHKLRPGAQVITTDRRLVSD-GPWEFSLLGEREGPNSETGGKSTAYLWEVVKSAL 255
            DV+FCY S++P  GDLLT LS+ L   LR GA V+TTDRRL S+ G WEF+L   REG N+ETGG S AY+WEV ++ +
Sbjct:  102 DVVFCYCSTWPAAGDLLTGLSFALAAVLRKGALVVTTDRRLASEPGAWEFALRATREGVNAETGGASVAYIWEVTQNGV 180
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BLAST of mRNA_S-dermatodea_contig1030.230.1 vs. uniprot
Match: A0A7S2V145_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V145_9STRA)

HSP 1 Score: 100 bits (248), Expect = 4.140e-23
Identity = 43/82 (52.44%), Postives = 59/82 (71.95%), Query Frame = 1 
Query:   10 ISNMDVLFCYSSSFPGYGDLLTELSYTLGHKLRPGAQVITTDRRLVSDGPWEFSLLGEREGPNSETGGKSTAYLWEVVKSAL 255
            +S   V+FCYSS+   +GD L +LS+ LG   + G  +ITTD++LVSDGPW+F LL   EGPN ETGG ST Y+W+V++S +
Sbjct:  306 LSRAGVIFCYSSALASFGDELGQLSFALGTTAQVGTLIITTDKKLVSDGPWKFQLLETVEGPNEETGGMSTGYIWKVLQSGV 387
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BLAST of mRNA_S-dermatodea_contig1030.230.1 vs. uniprot
Match: A0A7S1HJW0_HEMAN (Histone-lysine N-methyltransferase, H3 lysine-79 specific (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HJW0_HEMAN)

HSP 1 Score: 90.9 bits (224), Expect = 4.100e-20
Identity = 42/80 (52.50%), Postives = 57/80 (71.25%), Query Frame = 1 
Query:   10 ISNMDVLFCYSSSFPGYGDLLTELSYTLGHKLRPGAQVITTDRRLVSDGPWEFSLLGEREGPNSETGGKSTAYLWEVVKS 249
            + ++D++FCYS++F   G +LT+LS  LG  ++ GA+VIT D+ LVSDGPWEF  +G  EG NSE  G S  YL+ VVKS
Sbjct:  222 LQDVDLMFCYSTAFDSVGPMLTQLSACLGRNMKVGARVITVDKMLVSDGPWEFEEMGMLEGRNSEL-GSSVGYLYRVVKS 300
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BLAST of mRNA_S-dermatodea_contig1030.230.1 vs. uniprot
Match: A0A7S0Q107_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q107_9EUKA)

HSP 1 Score: 84.7 bits (208), Expect = 8.760e-19
Identity = 42/75 (56.00%), Postives = 51/75 (68.00%), Query Frame = 1 
Query:   22 DVLFCYSSSFPGYGDLLTELSYTLGHKLRPGAQVITTDRRLVSD--GPWEFSLLGEREGPNSETGGKSTAYLWEV 240
            D +F YSS+FP  GD LT+ S      L  G ++ITTD+RL SD  G WEF LL E +GPN+ETGG ST Y+WEV
Sbjct:   86 DCIFIYSSAFPSAGDTLTDASLAFS-MLPAGTRIITTDKRLGSDEAGRWEFQLLKELDGPNAETGGTSTGYIWEV 159
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1030.230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G834_ECTSI7.600e-4985.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LAT6_9PHAE5.230e-4787.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
L1JW98_GUITC1.510e-2757.83Uncharacterized protein (Fragment) n=1 Tax=Guillar... [more]
A0A835Z2B1_9STRA6.220e-2458.23Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V145_9STRA4.140e-2352.44Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1HJW0_HEMAN4.100e-2052.50Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
A0A7S0Q107_9EUKA8.760e-1956.00Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1030contigS-dermatodea_contig1030:11729..12346 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score150.6
Seed ortholog evalue3.1e-34
Seed eggNOG ortholog2880.D7G834
EggNOG OGs2D163@1,2SGUP@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_010610.1
Exons2
Model size258
Cds size240
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1030.230.1prot_S-dermatodea_contig1030.230.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1030 11747..12346 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924151.002289-UTR-S-dermatodea_contig1030:11728..117461622924151.002289-UTR-S-dermatodea_contig1030:11728..11746Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1030 11729..11746 +
1694079052.4881523-UTR-S-dermatodea_contig1030:11728..117461694079052.4881523-UTR-S-dermatodea_contig1030:11728..11746Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1030 11729..11746 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924151.0198393-CDS-S-dermatodea_contig1030:11746..118481622924151.0198393-CDS-S-dermatodea_contig1030:11746..11848Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1030 11747..11848 +
1694079052.500833-CDS-S-dermatodea_contig1030:11746..118481694079052.500833-CDS-S-dermatodea_contig1030:11746..11848Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1030 11747..11848 +
1622924151.0301578-CDS-S-dermatodea_contig1030:12208..123461622924151.0301578-CDS-S-dermatodea_contig1030:12208..12346Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1030 12209..12346 +
1694079052.5107687-CDS-S-dermatodea_contig1030:12208..123461694079052.5107687-CDS-S-dermatodea_contig1030:12208..12346Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1030 12209..12346 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1030.230.1

>prot_S-dermatodea_contig1030.230.1 ID=prot_S-dermatodea_contig1030.230.1|Name=mRNA_S-dermatodea_contig1030.230.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=80bp
MDVLFCYSSSFPGYGDLLTELSYTLGHKLRPGAQVITTDRRLVSDGPWEF
SLLGEREGPNSETGGKSTAYLWEVVKSAL*
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mRNA from alignment at S-dermatodea_contig1030:11729..12346+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1030.230.1 ID=mRNA_S-dermatodea_contig1030.230.1|Name=mRNA_S-dermatodea_contig1030.230.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=618bp|location=Sequence derived from alignment at S-dermatodea_contig1030:11729..12346+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTGGACATCTCCAACATGGACGTTCTTTTTTGCTATAGCAGTTCCTT
CCCCGGGTACGGTGATCTCCTCACCGAATTATCTTACACTCTGGGACACA
AGCTTCGACCTGGCGCTCAGGTGATCGAGTGTTCATTGTCTTCTCGCCAC
CATGGATGATATTGGATGTCGAGAGCATGCGTTGGAAACATTTCCCAGAG
TGCGTCAGGTTCGGACAACGGCGTGTAGCGTATGTGGACACGTTTTTCGT
TGTCCACAAGTGAAACCGTTGTTGCTAGCCCCACCAAACGTGTGGATGGG
CAGGCCGATGCGCACATCGGCTCCCAAAACAATCTCGTAGGCGTCCGTCC
GTCCTGTCCTGCCCATCTGCAAGCCCCCGTGGCGATCAGCTGGTGGAATG
CCTTATGTTTCACCAGCACTGCCGCACAACCCAGAATACACAAACGCGCG
AATTGAATCCATGCGCTTCGCATTGAACAGGTGATCACAACAGACCGTCG
CCTGGTGAGCGATGGACCATGGGAGTTTTCCTTGCTAGGGGAGCGCGAGG
GTCCAAACTCCGAAACAGGTGGCAAGTCTACCGCCTACTTGTGGGAGGTG
GTGAAGTCCGCCTTGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig1030:11729..12346+

>mRNA_S-dermatodea_contig1030.230.1 ID=mRNA_S-dermatodea_contig1030.230.1|Name=mRNA_S-dermatodea_contig1030.230.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at S-dermatodea_contig1030:11729..12346+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGACGTTCTTTTTTGCTATAGCAGTTCCTTCCCCGGGTACGGTGATCT
CCTCACCGAATTATCTTACACTCTGGGACACAAGCTTCGACCTGGCGCTC
AGATGGACGTTCTTTTTTGCTATAGCAGTTCCTTCCCCGGGTACGGTGAT
CTCCTCACCGAATTATCTTACACTCTGGGACACAAGCTTCGACCTGGCGC
TCAGGTGATCACAACAGACCGTCGCCTGGTGAGCGATGGACCATGGGAGT
TTTCCTTGCTAGGGGAGCGCGAGGGTCCAAACTCCGAAACAGGTGGCAAG
TCTACCGCCTACTTGTGGGAGGTGGTGAAGTCCGCCTTGTGAGTGATCAC
AACAGACCGTCGCCTGGTGAGCGATGGACCATGGGAGTTTTCCTTGCTAG
GGGAGCGCGAGGGTCCAAACTCCGAAACAGGTGGCAAGTCTACCGCCTAC
TTGTGGGAGGTGGTGAAGTCCGCCTTGTGA
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