mRNA_S-dermatodea_contig1030.229.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1030.229.1
Unique NamemRNA_S-dermatodea_contig1030.229.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig1030.229.1 vs. uniprot
Match: A0A6H5LAT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAT6_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 3.710e-44
Identity = 93/184 (50.54%), Postives = 114/184 (61.96%), Query Frame = 1
Query:  148 ITTASLPIPTTPRLSTAKHARWASGASGPVFSSPRNPSLEVMDTLFPRSCD--AERPSEEKVEGGEV-----ASYGQRLQAGRAAQGFVTDDGLAVMNAAPPQELTYGEYDLDFFFSLVDECLRIRAGGDGKGR---GALESEARNLVFGDIGSGCGRLVLAQALTLPWRLCRGVEKVPSLHDM 669
            ++T S P  T+    +  H  + SG S        + S+    +   RSCD  A   + E    G +      SY +R++ GR AQGF+T D LA     PP+ELTYGEYDLDFF SLV ECL +RAG  GK     GALE+EAR+L+FGDIGSGCGRLV+AQALT PW+ CRGVE VPSLHDM
Sbjct:    1 MSTPSAPTRTSHH--SRSHRHFESGCSS-------SRSILAHPSTTTRSCDPPAAALANEDGRAGVLDILFGGSYQERIEIGRDAQGFLTTDALAARTLVPPRELTYGEYDLDFFLSLVAECLNLRAGNSGKDDSSVGALEAEARSLIFGDIGSGCGRLVVAQALTWPWKSCRGVEIVPSLHDM 175          
BLAST of mRNA_S-dermatodea_contig1030.229.1 vs. uniprot
Match: D7FPV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPV7_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 8.600e-20
Identity = 44/68 (64.71%), Postives = 50/68 (73.53%), Query Frame = 1
Query:  466 FFFSLVDECLRIRAGGDGKGRGALESEARNLVFGDIGSGCGRLVLAQALTLPWRLCRGVEKVPSLHDM 669
            FF          ++G D    GALE+EAR+LVFGDIGSGCGRLV+AQALT PW+ CRGVE VPSLHDM
Sbjct:    9 FFLGARISLRAGKSGNDASSVGALEAEARSLVFGDIGSGCGRLVVAQALTWPWKSCRGVEIVPSLHDM 76          
BLAST of mRNA_S-dermatodea_contig1030.229.1 vs. uniprot
Match: K0TEI3_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TEI3_THAOC)

HSP 1 Score: 66.2 bits (160), Expect = 4.390e-9
Identity = 35/82 (42.68%), Postives = 50/82 (60.98%), Query Frame = 1
Query:  424 APPQELTYGEYDLDFFFSLVDECLRIRAGGDGKGRGALESEARNLVFGDIGSGCGRLVLAQALTLP-WRLCRGVEKVPSLHD 666
            +PPQE TYGE+D++FF  L+D    +      +   +L  +  N  F DIGSG GRLVL+ A   P W+LCRG+E +  +H+
Sbjct:  140 SPPQEFTYGEFDVEFFSLLLDRAWELYQVDSDEMSDSLPWQ--NKTFIDIGSGAGRLVLSAAALHPNWKLCRGLEILEGIHN 219          
BLAST of mRNA_S-dermatodea_contig1030.229.1 vs. uniprot
Match: A0A1E7FVN8_9STRA (DOT1 domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FVN8_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 9.240e-9
Identity = 32/81 (39.51%), Postives = 50/81 (61.73%), Query Frame = 1
Query:  427 PPQELTYGEYDLDFFFSLVDECLRIRAGGDGKGRGALESEARNLVFGDIGSGCGRLVLAQALTLP-WRLCRGVEKVPSLHD 666
            PP+E  YGE+D+     L+++ L+       + R  L+    +++F D GSG GRLVLA A   P W+LCRG+E +P++H+
Sbjct:   91 PPKEFVYGEFDI----YLLEQSLK-------RARDLLQKNDEDIIFCDAGSGIGRLVLAAAALYPNWKLCRGIELLPTIHE 160          
BLAST of mRNA_S-dermatodea_contig1030.229.1 vs. uniprot
Match: A0A7S2U737_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U737_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.590e-8
Identity = 36/83 (43.37%), Postives = 46/83 (55.42%), Query Frame = 1
Query:  427 PPQELTYGEYDLDFFFSLVDECLRIRAGGDGKGRGALESEARNLVFGDIGSGCGRLVLAQALTLP-WRLCRGVEKVPSLHDMA 672
            PPQELTYGE+DL FF  L+D      +      +        + VF D+GSG GRLVL  A   P +R CRG+E +  +H MA
Sbjct:   90 PPQELTYGEFDLLFFAQLLDRAASYHSSDHDDEKKHDTPSWDDKVFVDLGSGTGRLVLGAAALHPGFRQCRGLELLEGIHGMA 172          
BLAST of mRNA_S-dermatodea_contig1030.229.1 vs. uniprot
Match: A0A7S3SUZ4_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3SUZ4_EMIHU)

HSP 1 Score: 63.5 bits (153), Expect = 1.660e-8
Identity = 49/114 (42.98%), Postives = 58/114 (50.88%), Query Frame = 1
Query:  340 VASYGQRLQAGRAAQGFVTDDGLAVMNAAPPQ-ELTYGEYDLDFFFSLVDECLRIRAGGDGKGRGALESEARNLVFGDIGSGCGRLVLAQALTLPWRLCR--GVEKVPSLHDMA 672
            V SY  R+  GR AQ   +    + ++A P    LTYGE+DL FF +LVD  L   AG         E E     F D+GSGCGRLVLA +   P  L R  GVE    LH MA
Sbjct:   40 VDSYSDRMMVGRRAQLGESMVWRSTLSAEPDNGHLTYGEFDLAFFGALVDRALARPAG-------RREPET----FVDVGSGCGRLVLAASCVWP-ELARAAGVETCADLHMMA 141          
BLAST of mRNA_S-dermatodea_contig1030.229.1 vs. uniprot
Match: R1EJS5_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EJS5_EMIHU)

HSP 1 Score: 63.5 bits (153), Expect = 1.700e-8
Identity = 49/114 (42.98%), Postives = 58/114 (50.88%), Query Frame = 1
Query:  340 VASYGQRLQAGRAAQGFVTDDGLAVMNAAPPQ-ELTYGEYDLDFFFSLVDECLRIRAGGDGKGRGALESEARNLVFGDIGSGCGRLVLAQALTLPWRLCR--GVEKVPSLHDMA 672
            V SY  R+  GR AQ   +    + ++A P    LTYGE+DL FF +LVD  L   AG         E E     F D+GSGCGRLVLA +   P  L R  GVE    LH MA
Sbjct:   20 VDSYSDRMMVGRRAQLGESMVWRSTLSAEPDNGHLTYGEFDLAFFGALVDRALARPAG-------RREPET----FVDVGSGCGRLVLAASCVWP-ELARAAGVETCADLHMMA 121          
BLAST of mRNA_S-dermatodea_contig1030.229.1 vs. uniprot
Match: A0A7S3Q5I8_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q5I8_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 5.060e-7
Identity = 31/82 (37.80%), Postives = 45/82 (54.88%), Query Frame = 1
Query:  427 PPQELTYGEYDLDFFFSLVDECLRIRAGGDGKGRGALESEARNLVFGDIGSGCGRLVLAQALTLPWRLCRGVEKVPSLHDMA 672
            PP  L YGE+D   F  L+D+ +           G L +   +  F DIGSG GRLV+  A   P++LC+G+E +P +H+ A
Sbjct:  103 PPSTLVYGEFDFLTFSDLLDKSVAYYNESIENQDGKLVNGWSDKTFLDIGSGTGRLVIGAAALHPFKLCKGLEILPGIHESA 184          
BLAST of mRNA_S-dermatodea_contig1030.229.1 vs. uniprot
Match: A0A7S4QMK1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QMK1_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 8.410e-7
Identity = 36/95 (37.89%), Postives = 52/95 (54.74%), Query Frame = 1
Query:  427 PPQELTYGEYDLDFFFSLVDECLRIRAGGDGKGR---GALESEA---------RNLVFGDIGSGCGRLVLAQALTLP-WRLCRGVEKVPSLHDMA 672
            PP+ LTYGE+D  FF  L+D         + K +   G ++ +          ++ VF DIGSG GRLVL  A   P ++LCRG+E +  LH++A
Sbjct:  185 PPKHLTYGEFDFYFFAELLDRAWIYFCNEETKEKNDDGVVDDDVVDDASTGAWKDKVFADIGSGTGRLVLGAAALHPHFQLCRGLEVLEGLHNVA 279          
BLAST of mRNA_S-dermatodea_contig1030.229.1 vs. uniprot
Match: A0A7S2V145_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V145_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.680e-6
Identity = 51/154 (33.12%), Postives = 72/154 (46.75%), Query Frame = 1
Query:  262 LEVMDTLFPR--SCDAERPSEEKVEGGEVASYGQRLQAGRAAQGFVTDDGLAVMNAAP---PQELTYGEYDLDFFFSLVDECLRIRAGGDGKGRGALESEARN-LVFGDIGSGCGRLVLAQAL---------TLPWRLCR---GVEKVPSLHDM 669
            L V++ +FP+  S D   P +  +   ++ S  +R + GR AQG  TD               ELTYGE+D+ FF +LV++ L             L S+ +    F D+GSGCGRLVLA  L         +L   L     G+E VP LH +
Sbjct:   93 LPVINNVFPKYGSSDNHGPGDGPLLLAKLPSSDERFEIGRNAQGLFTDPNNPFGKFDTFGLDSELTYGEFDVAFFVNLVNKAL-------------LYSKFQGPRCFLDVGSGCGRLVLAAQLCFGHVSNQNSLKAGLLNEFVGIEVVPGLHHV 233          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1030.229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5LAT6_9PHAE3.710e-4450.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPV7_ECTSI8.600e-2064.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
K0TEI3_THAOC4.390e-942.68Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A1E7FVN8_9STRA9.240e-939.51DOT1 domain-containing protein n=1 Tax=Fragilariop... [more]
A0A7S2U737_9STRA1.590e-843.37Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S3SUZ4_EMIHU1.660e-842.98Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
R1EJS5_EMIHU1.700e-842.98Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A7S3Q5I8_9STRA5.060e-737.80Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S4QMK1_9STRA8.410e-737.89Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2V145_9STRA1.680e-633.12Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1030contigS-dermatodea_contig1030:10402..11302 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.1
Seed ortholog evalue1.5e-09
Seed eggNOG ortholog35128.Thapsdraft874
EggNOG OGs2E4FE@1,2SBC3@2759,2XBJ7@2836
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_010610.1
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size673
Cds size672
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924150.964294-CDS-S-dermatodea_contig1030:10401..109521622924150.964294-CDS-S-dermatodea_contig1030:10401..10952Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1030 10402..10952 +
1694079052.4647245-CDS-S-dermatodea_contig1030:10401..109521694079052.4647245-CDS-S-dermatodea_contig1030:10401..10952Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1030 10402..10952 +
1622924150.9730372-CDS-S-dermatodea_contig1030:11180..113011622924150.9730372-CDS-S-dermatodea_contig1030:11180..11301Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1030 11181..11301 +
1694079052.4739895-CDS-S-dermatodea_contig1030:11180..113011694079052.4739895-CDS-S-dermatodea_contig1030:11180..11301Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1030 11181..11301 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1030.229.1prot_S-dermatodea_contig1030.229.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1030 10402..11301 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1030.229.1

>prot_S-dermatodea_contig1030.229.1 ID=prot_S-dermatodea_contig1030.229.1|Name=mRNA_S-dermatodea_contig1030.229.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=224bp
WRRNKAKGELKRHHASPERINSESMNSSACLALLVLFFKQAFERGALAFI
TTASLPIPTTPRLSTAKHARWASGASGPVFSSPRNPSLEVMDTLFPRSCD
AERPSEEKVEGGEVASYGQRLQAGRAAQGFVTDDGLAVMNAAPPQELTYG
EYDLDFFFSLVDECLRIRAGGDGKGRGALESEARNLVFGDIGSGCGRLVL
AQALTLPWRLCRGVEKVPSLHDMA
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mRNA from alignment at S-dermatodea_contig1030:10402..11302+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1030.229.1 ID=mRNA_S-dermatodea_contig1030.229.1|Name=mRNA_S-dermatodea_contig1030.229.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=901bp|location=Sequence derived from alignment at S-dermatodea_contig1030:10402..11302+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGGAGGCGGAACAAAGCTAAGGGCGAGCTAAAGAGGCACCACGCCTCACC CGAGCGAATTAACTCGGAATCCATGAATAGTTCGGCCTGTCTTGCCCTGC TGGTTCTGTTCTTCAAGCAAGCTTTTGAACGGGGTGCGTTGGCTTTCATC ACCACCGCATCCCTCCCAATCCCCACCACACCACGGTTGAGCACCGCCAA GCATGCGAGATGGGCCTCTGGGGCTTCAGGCCCGGTATTTTCGTCTCCTC GGAATCCATCGCTAGAAGTCATGGACACCCTGTTTCCTCGAAGCTGTGAC GCCGAGCGGCCTTCGGAAGAGAAGGTGGAAGGCGGCGAAGTGGCTTCGTA TGGCCAGCGTTTACAAGCGGGTCGCGCCGCACAAGGCTTTGTGACGGACG ATGGGTTGGCGGTAATGAATGCCGCTCCTCCGCAAGAGTTAACGTACGGC GAGTACGATTTGGACTTCTTCTTCTCTCTGGTGGACGAATGCTTGCGCAT CCGGGCTGGAGGAGATGGGAAGGGCCGTGGCGCTCTGGAATCCGAGGCGA GGTAAAAGCAACGTACTTTGTATTGACGCCGAATGAGACTTCTACCTACT TATACAAGTCTTGTAGATTCAGGGCAGTATTGTTCCCGTAGGTTGCAATT TTCAATTTTAGCCAGAATTGGGAGCCTCATGTTCGGGGGCTCGGAGGTAT TTGGGGACTATCGACTACTGGAGTGGTATTGTCTAACCTTCCTGAAAGTG GCATGCCTATTCTGTTGTACGCGTGGCAGAAATCTCGTGTTTGGAGACAT TGGGTCTGGCTGCGGACGCCTCGTCCTTGCTCAAGCGCTGACGCTGCCTT GGCGGTTATGCCGCGGCGTGGAAAAGGTGCCATCTCTTCACGACATGGCT G
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Coding sequence (CDS) from alignment at S-dermatodea_contig1030:10402..11302+

>mRNA_S-dermatodea_contig1030.229.1 ID=mRNA_S-dermatodea_contig1030.229.1|Name=mRNA_S-dermatodea_contig1030.229.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1344bp|location=Sequence derived from alignment at S-dermatodea_contig1030:10402..11302+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGGAGGCGGAACAAAGCTAAGGGCGAGCTAAAGAGGCACCACGCCTCACC
CGAGCGAATTAACTCGGAATCCATGAATAGTTCGGCCTGTCTTGCCCTGC
TGGTTCTGTTCTTCAAGCAAGCTTTTGAACGGGGTGCGTTGGCTTTCATC
ACCACCGCATCCCTCCCAATCCCCACCACACCACGGTTGAGCACCGCCAA
GCATGCGAGATGGGCCTCTGGGGCTTCAGGCCCGGTATTTTCGTCTCCTC
GGAATCCATCGCTAGAAGTCATGGACACCCTGTTTCCTCGAAGCTGTGAC
GCCGAGCGGCCTTCGGAAGAGAAGGTGGAAGGCGGCGAAGTGGCTTCGTA
TGGCCAGCGTTTACAAGCGGGTCGCGCCGCACAAGGCTTTGTGACGGACG
ATGGGTTGGCGGTAATGAATGCCGCTCCTCCGCAAGAGTTAACGTACGGC
GAGTACGATTTGGACTTCTTCTTCTCTCTGGTGGACGAATGCTTGCGCAT
CCGGGCTGGAGGAGATGGGAAGGGCCGTGGCGCTCTGGAATCCGAGGCGA
GTGGAGGCGGAACAAAGCTAAGGGCGAGCTAAAGAGGCACCACGCCTCAC
CCGAGCGAATTAACTCGGAATCCATGAATAGTTCGGCCTGTCTTGCCCTG
CTGGTTCTGTTCTTCAAGCAAGCTTTTGAACGGGGTGCGTTGGCTTTCAT
CACCACCGCATCCCTCCCAATCCCCACCACACCACGGTTGAGCACCGCCA
AGCATGCGAGATGGGCCTCTGGGGCTTCAGGCCCGGTATTTTCGTCTCCT
CGGAATCCATCGCTAGAAGTCATGGACACCCTGTTTCCTCGAAGCTGTGA
CGCCGAGCGGCCTTCGGAAGAGAAGGTGGAAGGCGGCGAAGTGGCTTCGT
ATGGCCAGCGTTTACAAGCGGGTCGCGCCGCACAAGGCTTTGTGACGGAC
GATGGGTTGGCGGTAATGAATGCCGCTCCTCCGCAAGAGTTAACGTACGG
CGAGTACGATTTGGACTTCTTCTTCTCTCTGGTGGACGAATGCTTGCGCA
TCCGGGCTGGAGGAGATGGGAAGGGCCGTGGCGCTCTGGAATCCGAGGCG
AGAAATCTCGTGTTTGGAGACATTGGGTCTGGCTGCGGACGCCTCGTCCT
TGCTCAAGCGCTGACGCTGCCTTGGCGGTTATGCCGCGGCGTGGAAAAGG
TGCCATCTCTTCACGACATGGCTAAATCTCGTGTTTGGAGACATTGGGTC
TGGCTGCGGACGCCTCGTCCTTGCTCAAGCGCTGACGCTGCCTTGGCGGT
TATGCCGCGGCGTGGAAAAGGTGCCATCTCTTCACGACATGGCT
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