mRNA_S-dermatodea_contig1030.229.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig1030.229.1 vs. uniprot
Match: A0A6H5LAT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAT6_9PHAE) HSP 1 Score: 159 bits (401), Expect = 3.710e-44 Identity = 93/184 (50.54%), Postives = 114/184 (61.96%), Query Frame = 1
Query: 148 ITTASLPIPTTPRLSTAKHARWASGASGPVFSSPRNPSLEVMDTLFPRSCD--AERPSEEKVEGGEV-----ASYGQRLQAGRAAQGFVTDDGLAVMNAAPPQELTYGEYDLDFFFSLVDECLRIRAGGDGKGR---GALESEARNLVFGDIGSGCGRLVLAQALTLPWRLCRGVEKVPSLHDM 669
++T S P T+ + H + SG S + S+ + RSCD A + E G + SY +R++ GR AQGF+T D LA PP+ELTYGEYDLDFF SLV ECL +RAG GK GALE+EAR+L+FGDIGSGCGRLV+AQALT PW+ CRGVE VPSLHDM
Sbjct: 1 MSTPSAPTRTSHH--SRSHRHFESGCSS-------SRSILAHPSTTTRSCDPPAAALANEDGRAGVLDILFGGSYQERIEIGRDAQGFLTTDALAARTLVPPRELTYGEYDLDFFLSLVAECLNLRAGNSGKDDSSVGALEAEARSLIFGDIGSGCGRLVVAQALTWPWKSCRGVEIVPSLHDM 175
BLAST of mRNA_S-dermatodea_contig1030.229.1 vs. uniprot
Match: D7FPV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPV7_ECTSI) HSP 1 Score: 90.9 bits (224), Expect = 8.600e-20 Identity = 44/68 (64.71%), Postives = 50/68 (73.53%), Query Frame = 1
Query: 466 FFFSLVDECLRIRAGGDGKGRGALESEARNLVFGDIGSGCGRLVLAQALTLPWRLCRGVEKVPSLHDM 669
FF ++G D GALE+EAR+LVFGDIGSGCGRLV+AQALT PW+ CRGVE VPSLHDM
Sbjct: 9 FFLGARISLRAGKSGNDASSVGALEAEARSLVFGDIGSGCGRLVVAQALTWPWKSCRGVEIVPSLHDM 76
BLAST of mRNA_S-dermatodea_contig1030.229.1 vs. uniprot
Match: K0TEI3_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TEI3_THAOC) HSP 1 Score: 66.2 bits (160), Expect = 4.390e-9 Identity = 35/82 (42.68%), Postives = 50/82 (60.98%), Query Frame = 1
Query: 424 APPQELTYGEYDLDFFFSLVDECLRIRAGGDGKGRGALESEARNLVFGDIGSGCGRLVLAQALTLP-WRLCRGVEKVPSLHD 666
+PPQE TYGE+D++FF L+D + + +L + N F DIGSG GRLVL+ A P W+LCRG+E + +H+
Sbjct: 140 SPPQEFTYGEFDVEFFSLLLDRAWELYQVDSDEMSDSLPWQ--NKTFIDIGSGAGRLVLSAAALHPNWKLCRGLEILEGIHN 219
BLAST of mRNA_S-dermatodea_contig1030.229.1 vs. uniprot
Match: A0A1E7FVN8_9STRA (DOT1 domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FVN8_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 9.240e-9 Identity = 32/81 (39.51%), Postives = 50/81 (61.73%), Query Frame = 1
Query: 427 PPQELTYGEYDLDFFFSLVDECLRIRAGGDGKGRGALESEARNLVFGDIGSGCGRLVLAQALTLP-WRLCRGVEKVPSLHD 666
PP+E YGE+D+ L+++ L+ + R L+ +++F D GSG GRLVLA A P W+LCRG+E +P++H+
Sbjct: 91 PPKEFVYGEFDI----YLLEQSLK-------RARDLLQKNDEDIIFCDAGSGIGRLVLAAAALYPNWKLCRGIELLPTIHE 160
BLAST of mRNA_S-dermatodea_contig1030.229.1 vs. uniprot
Match: A0A7S2U737_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U737_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 1.590e-8 Identity = 36/83 (43.37%), Postives = 46/83 (55.42%), Query Frame = 1
Query: 427 PPQELTYGEYDLDFFFSLVDECLRIRAGGDGKGRGALESEARNLVFGDIGSGCGRLVLAQALTLP-WRLCRGVEKVPSLHDMA 672
PPQELTYGE+DL FF L+D + + + VF D+GSG GRLVL A P +R CRG+E + +H MA
Sbjct: 90 PPQELTYGEFDLLFFAQLLDRAASYHSSDHDDEKKHDTPSWDDKVFVDLGSGTGRLVLGAAALHPGFRQCRGLELLEGIHGMA 172
BLAST of mRNA_S-dermatodea_contig1030.229.1 vs. uniprot
Match: A0A7S3SUZ4_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3SUZ4_EMIHU) HSP 1 Score: 63.5 bits (153), Expect = 1.660e-8 Identity = 49/114 (42.98%), Postives = 58/114 (50.88%), Query Frame = 1
Query: 340 VASYGQRLQAGRAAQGFVTDDGLAVMNAAPPQ-ELTYGEYDLDFFFSLVDECLRIRAGGDGKGRGALESEARNLVFGDIGSGCGRLVLAQALTLPWRLCR--GVEKVPSLHDMA 672
V SY R+ GR AQ + + ++A P LTYGE+DL FF +LVD L AG E E F D+GSGCGRLVLA + P L R GVE LH MA
Sbjct: 40 VDSYSDRMMVGRRAQLGESMVWRSTLSAEPDNGHLTYGEFDLAFFGALVDRALARPAG-------RREPET----FVDVGSGCGRLVLAASCVWP-ELARAAGVETCADLHMMA 141
BLAST of mRNA_S-dermatodea_contig1030.229.1 vs. uniprot
Match: R1EJS5_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EJS5_EMIHU) HSP 1 Score: 63.5 bits (153), Expect = 1.700e-8 Identity = 49/114 (42.98%), Postives = 58/114 (50.88%), Query Frame = 1
Query: 340 VASYGQRLQAGRAAQGFVTDDGLAVMNAAPPQ-ELTYGEYDLDFFFSLVDECLRIRAGGDGKGRGALESEARNLVFGDIGSGCGRLVLAQALTLPWRLCR--GVEKVPSLHDMA 672
V SY R+ GR AQ + + ++A P LTYGE+DL FF +LVD L AG E E F D+GSGCGRLVLA + P L R GVE LH MA
Sbjct: 20 VDSYSDRMMVGRRAQLGESMVWRSTLSAEPDNGHLTYGEFDLAFFGALVDRALARPAG-------RREPET----FVDVGSGCGRLVLAASCVWP-ELARAAGVETCADLHMMA 121
BLAST of mRNA_S-dermatodea_contig1030.229.1 vs. uniprot
Match: A0A7S3Q5I8_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q5I8_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 5.060e-7 Identity = 31/82 (37.80%), Postives = 45/82 (54.88%), Query Frame = 1
Query: 427 PPQELTYGEYDLDFFFSLVDECLRIRAGGDGKGRGALESEARNLVFGDIGSGCGRLVLAQALTLPWRLCRGVEKVPSLHDMA 672
PP L YGE+D F L+D+ + G L + + F DIGSG GRLV+ A P++LC+G+E +P +H+ A
Sbjct: 103 PPSTLVYGEFDFLTFSDLLDKSVAYYNESIENQDGKLVNGWSDKTFLDIGSGTGRLVIGAAALHPFKLCKGLEILPGIHESA 184
BLAST of mRNA_S-dermatodea_contig1030.229.1 vs. uniprot
Match: A0A7S4QMK1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QMK1_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 8.410e-7 Identity = 36/95 (37.89%), Postives = 52/95 (54.74%), Query Frame = 1
Query: 427 PPQELTYGEYDLDFFFSLVDECLRIRAGGDGKGR---GALESEA---------RNLVFGDIGSGCGRLVLAQALTLP-WRLCRGVEKVPSLHDMA 672
PP+ LTYGE+D FF L+D + K + G ++ + ++ VF DIGSG GRLVL A P ++LCRG+E + LH++A
Sbjct: 185 PPKHLTYGEFDFYFFAELLDRAWIYFCNEETKEKNDDGVVDDDVVDDASTGAWKDKVFADIGSGTGRLVLGAAALHPHFQLCRGLEVLEGLHNVA 279
BLAST of mRNA_S-dermatodea_contig1030.229.1 vs. uniprot
Match: A0A7S2V145_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V145_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 1.680e-6 Identity = 51/154 (33.12%), Postives = 72/154 (46.75%), Query Frame = 1
Query: 262 LEVMDTLFPR--SCDAERPSEEKVEGGEVASYGQRLQAGRAAQGFVTDDGLAVMNAAP---PQELTYGEYDLDFFFSLVDECLRIRAGGDGKGRGALESEARN-LVFGDIGSGCGRLVLAQAL---------TLPWRLCR---GVEKVPSLHDM 669
L V++ +FP+ S D P + + ++ S +R + GR AQG TD ELTYGE+D+ FF +LV++ L L S+ + F D+GSGCGRLVLA L +L L G+E VP LH +
Sbjct: 93 LPVINNVFPKYGSSDNHGPGDGPLLLAKLPSSDERFEIGRNAQGLFTDPNNPFGKFDTFGLDSELTYGEFDVAFFVNLVNKAL-------------LYSKFQGPRCFLDVGSGCGRLVLAAQLCFGHVSNQNSLKAGLLNEFVGIEVVPGLHHV 233 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1030.229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig1030.229.1 >prot_S-dermatodea_contig1030.229.1 ID=prot_S-dermatodea_contig1030.229.1|Name=mRNA_S-dermatodea_contig1030.229.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=224bp WRRNKAKGELKRHHASPERINSESMNSSACLALLVLFFKQAFERGALAFIback to top mRNA from alignment at S-dermatodea_contig1030:10402..11302+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig1030.229.1 ID=mRNA_S-dermatodea_contig1030.229.1|Name=mRNA_S-dermatodea_contig1030.229.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=901bp|location=Sequence derived from alignment at S-dermatodea_contig1030:10402..11302+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig1030:10402..11302+ >mRNA_S-dermatodea_contig1030.229.1 ID=mRNA_S-dermatodea_contig1030.229.1|Name=mRNA_S-dermatodea_contig1030.229.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1344bp|location=Sequence derived from alignment at S-dermatodea_contig1030:10402..11302+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |