mRNA_S-dermatodea_contig10288.216.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10288.216.1
Unique NamemRNA_S-dermatodea_contig10288.216.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10288.216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10288contigS-dermatodea_contig10288:2165..2817 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size653
Cds size651
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924149.714184-CDS-S-dermatodea_contig10288:2164..28151622924149.714184-CDS-S-dermatodea_contig10288:2164..2815Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10288 2165..2815 +
1694079051.5294435-CDS-S-dermatodea_contig10288:2164..28151694079051.5294435-CDS-S-dermatodea_contig10288:2164..2815Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10288 2165..2815 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10288.216.1prot_S-dermatodea_contig10288.216.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10288 2165..2815 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10288.216.1

>prot_S-dermatodea_contig10288.216.1 ID=prot_S-dermatodea_contig10288.216.1|Name=mRNA_S-dermatodea_contig10288.216.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=217bp
ISSRPAGQTTPSTSRLYSSPKRRRFRPDGSATPTIGLLNAKPSSSSSKSS
GKPAGARSALNIPPNLSLRKDEGQETPSKAWLKPLPKVRFSIPAGHATSA
TSWLKQSPIINSLSVIGQFSAAASRGLLKKNPNARLSRFFGHRMSSRGWL
KSLPRVKCLSSGGNSTPERVWSNQLPKVSDSSSGGHTAPCTGLLKLQPNV
SRLSEAGHVTLSIVLLN
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mRNA from alignment at S-dermatodea_contig10288:2165..2817+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10288.216.1 ID=mRNA_S-dermatodea_contig10288.216.1|Name=mRNA_S-dermatodea_contig10288.216.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=653bp|location=Sequence derived from alignment at S-dermatodea_contig10288:2165..2817+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATCTCTTCCAGGCCGGCGGGCCAGACAACGCCCTCGACGTCGCGGTTGTA
CTCCTCGCCAAAGCGCAGACGTTTCAGGCCCGACGGCAGCGCGACGCCGA
CCATCGGCTTATTGAACGCAAAGCCCAGCTCCAGCTCTTCCAAATCCTCC
GGAAAGCCCGCGGGCGCCAGATCCGCGTTGAACATCCCGCCAAACTTGAG
CCTCCGCAAGGACGAGGGCCAAGAAACGCCTTCCAAGGCTTGGTTGAAAC
CCCTTCCGAAGGTGAGGTTCTCGATCCCCGCGGGCCACGCCACGTCCGCG
ACGTCTTGGTTGAAGCAGTCGCCCATAATTAACTCCCTCAGCGTCATTGG
CCAGTTTTCGGCCGCGGCCTCCAGGGGTCTATTGAAGAAAAACCCCAACG
CCAGGCTCTCCAGGTTTTTCGGCCACAGGATGTCATCGAGGGGTTGGTTG
AAATCTCTCCCGAGGGTCAAGTGCCTTAGTTCCGGCGGGAACTCGACGCC
GGAGAGGGTCTGGTCGAACCAGCTGCCGAAAGTTAGCGACTCCAGCTCGG
GCGGCCACACGGCCCCGTGCACCGGCTTGTTGAAGTTGCAGCCGAACGTC
AGCCGCTTGAGCGAGGCGGGCCACGTAACCCTGTCGATCGTCCTATTGAA
CCT
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Coding sequence (CDS) from alignment at S-dermatodea_contig10288:2165..2817+

>mRNA_S-dermatodea_contig10288.216.1 ID=mRNA_S-dermatodea_contig10288.216.1|Name=mRNA_S-dermatodea_contig10288.216.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1302bp|location=Sequence derived from alignment at S-dermatodea_contig10288:2165..2817+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATCTCTTCCAGGCCGGCGGGCCAGACAACGCCCTCGACGTCGCGGTTGTA
CTCCTCGCCAAAGCGCAGACGTTTCAGGCCCGACGGCAGCGCGACGCCGA
CCATCGGCTTATTGAACGCAAAGCCCAGCTCCAGCTCTTCCAAATCCTCC
GGAAAGCCCGCGGGCGCCAGATCCGCGTTGAACATCCCGCCAAACTTGAG
CCTCCGCAAGGACGAGGGCCAAGAAACGCCTTCCAAGGCTTGGTTGAAAC
CCCTTCCGAAGGTGAGGTTCTCGATCCCCGCGGGCCACGCCACGTCCGCG
ACGTCTTGGTTGAAGCAGTCGCCCATAATTAACTCCCTCAGCGTCATTGG
CCAGTTTTCGGCCGCGGCCTCCAGGGGTCTATTGAAGAAAAACCCCAACG
CCAGGCTCTCCAGGTTTTTCGGCCACAGGATGTCATCGAGGGGTTGGTTG
AAATCTCTCCCGAGGGTCAAGTGCCTTAGTTCCGGCGGGAACTCGACGCC
GGAGAGGGTCTGGTCGAACCAGCTGCCGAAAGTTAGCGACTCCAGCTCGG
GCGGCCACACGGCCCCGTGCACCGGCTTGTTGAAGTTGCAGCCGAACGTC
AGCCGCTTGAGCGAGGCGGGCCACGTAACCCTGTCGATCGTCCTATTGAA
CATCTCTTCCAGGCCGGCGGGCCAGACAACGCCCTCGACGTCGCGGTTGT
ACTCCTCGCCAAAGCGCAGACGTTTCAGGCCCGACGGCAGCGCGACGCCG
ACCATCGGCTTATTGAACGCAAAGCCCAGCTCCAGCTCTTCCAAATCCTC
CGGAAAGCCCGCGGGCGCCAGATCCGCGTTGAACATCCCGCCAAACTTGA
GCCTCCGCAAGGACGAGGGCCAAGAAACGCCTTCCAAGGCTTGGTTGAAA
CCCCTTCCGAAGGTGAGGTTCTCGATCCCCGCGGGCCACGCCACGTCCGC
GACGTCTTGGTTGAAGCAGTCGCCCATAATTAACTCCCTCAGCGTCATTG
GCCAGTTTTCGGCCGCGGCCTCCAGGGGTCTATTGAAGAAAAACCCCAAC
GCCAGGCTCTCCAGGTTTTTCGGCCACAGGATGTCATCGAGGGGTTGGTT
GAAATCTCTCCCGAGGGTCAAGTGCCTTAGTTCCGGCGGGAACTCGACGC
CGGAGAGGGTCTGGTCGAACCAGCTGCCGAAAGTTAGCGACTCCAGCTCG
GGCGGCCACACGGCCCCGTGCACCGGCTTGTTGAAGTTGCAGCCGAACGT
CAGCCGCTTGAGCGAGGCGGGCCACGTAACCCTGTCGATCGTCCTATTGA
AC
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