mRNA_S-dermatodea_contig10282.212.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10282.212.1
Unique NamemRNA_S-dermatodea_contig10282.212.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10282.212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10282contigS-dermatodea_contig10282:5796..6171 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size378
Cds size342
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924149.4148633-UTR-S-dermatodea_contig10282:5795..58291622924149.4148633-UTR-S-dermatodea_contig10282:5795..5829Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10282 5796..5829 +
1694079051.344877-UTR-S-dermatodea_contig10282:5795..58291694079051.344877-UTR-S-dermatodea_contig10282:5795..5829Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10282 5796..5829 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924149.4242864-CDS-S-dermatodea_contig10282:5829..61711622924149.4242864-CDS-S-dermatodea_contig10282:5829..6171Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10282 5830..6171 +
1694079051.360154-CDS-S-dermatodea_contig10282:5829..61711694079051.360154-CDS-S-dermatodea_contig10282:5829..6171Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10282 5830..6171 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10282.212.1prot_S-dermatodea_contig10282.212.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10282 5830..6171 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10282.212.1

>prot_S-dermatodea_contig10282.212.1 ID=prot_S-dermatodea_contig10282.212.1|Name=mRNA_S-dermatodea_contig10282.212.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=114bp
MVPPRTGLRHPIRSLAITRAPPLYVVVSLARFLRWACVGKLLTASSRRRY
VTLTPAGRLGRGKARLVTFPTYCRKNIKNVSVTRFFQATTLENLRVDDGS
LFHPIQLSPRFPAV
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mRNA from alignment at S-dermatodea_contig10282:5796..6171+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10282.212.1 ID=mRNA_S-dermatodea_contig10282.212.1|Name=mRNA_S-dermatodea_contig10282.212.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=376bp|location=Sequence derived from alignment at S-dermatodea_contig10282:5796..6171+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCCGACACCATGCCACCACACACTACATGCTAAATGGTGCCCCCCCGAA
CCGGACTCCGCCACCCGATTCGATCTCTGGCGATTACCCGCGCACCTCCC
CTCTACGTTGTCGTTTCCTTGGCCCGGTTTCTTAGGTGGGCGTGCGTGGG
GAAGTTACTAACCGCATCGTCGCGAAGGCGTTACGTTACCCTCACGCCGG
CAGGTCGTCTTGGGCGAGGCAAGGCAAGGCTCGTCACATTTCCTACATAC
TGTAGAAAAAATATAAAAAATGTAAGCGTGACGCGTTTTTTTCAAGCCAC
CACGCTAGAAAACCTACGTGTCGACGACGGCAGCCTTTTTCATCCAATTC
AATTATCACCTCGGTTTCCTGCCGTC
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Coding sequence (CDS) from alignment at S-dermatodea_contig10282:5796..6171+

>mRNA_S-dermatodea_contig10282.212.1 ID=mRNA_S-dermatodea_contig10282.212.1|Name=mRNA_S-dermatodea_contig10282.212.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at S-dermatodea_contig10282:5796..6171+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTGCCCCCCCGAACCGGACTCCGCCACCCGATTCGATCTCTGGCGAT
TACCCGCGCACCTCCCCTCTACGTTGTCGTTTCCTTGGCCCGGTTTCTTA
GGTGGGCGTGCGTGGGGAAGTTACTAACCGCATCGTCGCGAAGGCGTTAC
GTTACCCTCACGCCGGCAGGTCGTCTTGGGCGAGGCAAGGCAAGGCTCGT
CACATTTCCTACATACTGTAGAAAAAATATAAAAAATGTAAGCGTGACGC
GTTTTTTTCAAGCCACCACGCTAGAAAACCTACGTGTCGACGACGGCAGC
CTTTTTCATCCAATTCAATTATCACCTCGGTTTCCTGCCGTCATGGTGCC
CCCCCGAACCGGACTCCGCCACCCGATTCGATCTCTGGCGATTACCCGCG
CACCTCCCCTCTACGTTGTCGTTTCCTTGGCCCGGTTTCTTAGGTGGGCG
TGCGTGGGGAAGTTACTAACCGCATCGTCGCGAAGGCGTTACGTTACCCT
CACGCCGGCAGGTCGTCTTGGGCGAGGCAAGGCAAGGCTCGTCACATTTC
CTACATACTGTAGAAAAAATATAAAAAATGTAAGCGTGACGCGTTTTTTT
CAAGCCACCACGCTAGAAAACCTACGTGTCGACGACGGCAGCCTTTTTCA
TCCAATTCAATTATCACCTCGGTTTCCTGCCGTC
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