mRNA_S-dermatodea_contig10282.210.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10282.210.1
Unique NamemRNA_S-dermatodea_contig10282.210.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10282.210.1 vs. uniprot
Match: A0A6H5JHF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHF2_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.710e-23
Identity = 44/74 (59.46%), Postives = 58/74 (78.38%), Query Frame = 1 
Query:  313 RSIRFEAIVEAGSKSRYMALYSVCLEGMEDRLTICDLLMLNGDGLICRLENCFDASKCPKEIVDAGAATIAAFN 534
            + +RFEAI EAGSK++Y+ LY V LEG E  +++ DLL  +G+GLICRLENCFD +K P+EI+DAGA T+A F 
Sbjct:   29 KGVRFEAIAEAGSKTKYLVLYYVRLEGQESEMSLVDLLTQDGEGLICRLENCFDTTKYPQEIIDAGAPTLAGFE 102
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BLAST of mRNA_S-dermatodea_contig10282.210.1 vs. uniprot
Match: D8LJC6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJC6_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 4.670e-23
Identity = 45/74 (60.81%), Postives = 56/74 (75.68%), Query Frame = 1 
Query:  313 RSIRFEAIVEAGSKSRYMALYSVCLEGMEDRLTICDLLMLNGDGLICRLENCFDASKCPKEIVDAGAATIAAFN 534
            + +RFEAI EAGSK +Y+ LY V LEG E  + + DLL L+ DGLICRLENCFD +KCP+EI+DAGA T+  F 
Sbjct:  162 KEVRFEAIAEAGSKKKYLVLYYVRLEGQESEMPLVDLLTLDDDGLICRLENCFDTTKCPQEIIDAGAPTLVGFE 235
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10282.210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHF2_9PHAE1.710e-2359.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJC6_ECTSI4.670e-2360.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10282contigS-dermatodea_contig10282:103..701 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-13_000270.1
Exons1
Model size599
Cds size417
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10282.210.1prot_S-dermatodea_contig10282.210.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10282 226..642 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924149.4539812-UTR-S-dermatodea_contig10282:102..2251622924149.4539812-UTR-S-dermatodea_contig10282:102..225Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10282 103..225 +
1694079051.371711-UTR-S-dermatodea_contig10282:102..2251694079051.371711-UTR-S-dermatodea_contig10282:102..225Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10282 103..225 +
1622924149.4749355-UTR-S-dermatodea_contig10282:642..7011622924149.4749355-UTR-S-dermatodea_contig10282:642..701Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10282 643..701 +
1694079051.3898084-UTR-S-dermatodea_contig10282:642..7011694079051.3898084-UTR-S-dermatodea_contig10282:642..701Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10282 643..701 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924149.4667695-CDS-S-dermatodea_contig10282:225..6421622924149.4667695-CDS-S-dermatodea_contig10282:225..642Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10282 226..642 +
1694079051.3798022-CDS-S-dermatodea_contig10282:225..6421694079051.3798022-CDS-S-dermatodea_contig10282:225..642Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10282 226..642 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10282.210.1

>prot_S-dermatodea_contig10282.210.1 ID=prot_S-dermatodea_contig10282.210.1|Name=mRNA_S-dermatodea_contig10282.210.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=139bp
MFLGAFLAHSLPKTYLIMPYTLSSSNRYFRVGSDFYQYITIPRHERVCDE
EKLTKVFCLFLTPRSIRFEAIVEAGSKSRYMALYSVCLEGMEDRLTICDL
LMLNGDGLICRLENCFDASKCPKEIVDAGAATIAAFNA*
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mRNA from alignment at S-dermatodea_contig10282:103..701+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10282.210.1 ID=mRNA_S-dermatodea_contig10282.210.1|Name=mRNA_S-dermatodea_contig10282.210.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=599bp|location=Sequence derived from alignment at S-dermatodea_contig10282:103..701+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGGTAAGACACCATAGCATCACATGTAGCAACTGAGTCTCCATAGGTGTG
TTTAACAGCTTGGATCATCTTCCCTCTTGAAAAGGTGGGACCCCAACGCT
CGCTCTATGTTTCTGAAATATTTATGTTTTTAGGGGCATTCCTCGCTCAC
TCCCTTCCCAAAACATACCTTATCATGCCATATACTCTCAGCTCGAGCAA
CAGATACTTTCGGGTTGGCAGTGATTTCTACCAGTACATAACCATACCTC
GACATGAGAGAGTGTGTGATGAAGAGAAACTAACGAAAGTATTTTGTTTA
TTCCTCACTCCCCGCTCCATCAGGTTCGAGGCAATCGTCGAGGCCGGCTC
CAAGAGCAGGTACATGGCCCTGTACTCGGTCTGCCTGGAAGGCATGGAGG
ACCGCTTGACGATCTGCGATCTGCTGATGCTCAACGGTGACGGCCTCATC
TGCCGCCTCGAAAATTGCTTCGACGCTTCCAAGTGCCCCAAAGAGATCGT
GGACGCAGGAGCTGCCACGATCGCGGCGTTCAACGCCTAAGCGTTCTTGA
TAGCACCGTGCATACCGTAGCGTACGCCTGAGAAGGGGGGTGGGGTGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10282:103..701+

>mRNA_S-dermatodea_contig10282.210.1 ID=mRNA_S-dermatodea_contig10282.210.1|Name=mRNA_S-dermatodea_contig10282.210.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at S-dermatodea_contig10282:103..701+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTTTTTAGGGGCATTCCTCGCTCACTCCCTTCCCAAAACATACCTTAT
CATGCCATATACTCTCAGCTCGAGCAACAGATACTTTCGGGTTGGCAGTG
ATTTCTACCAGTACATAACCATACCTCGACATGAGAGAGTGTGTGATGAA
GAGAAACTAACGAAAGTATTTTGTTTATTCCTCACTCCCCGCTCCATCAG
GTTCGAGGCAATCGTCGAGGCCGGCTCCAAGAGCAGGTACATGGCCCTGT
ACTCGGTCTGCCTGGAAGGCATGGAGGACCGCTTGACGATCTGCGATCTG
CTGATGCTCAACGGTGACGGCCTCATCTGCCGCCTCGAAAATTGCTTCGA
CGCTTCCAAGTGCCCCAAAGAGATCGTGGACGCAGGAGCTGCCACGATCG
CGGCGTTCAACGCCTAAATGTTTTTAGGGGCATTCCTCGCTCACTCCCTT
CCCAAAACATACCTTATCATGCCATATACTCTCAGCTCGAGCAACAGATA
CTTTCGGGTTGGCAGTGATTTCTACCAGTACATAACCATACCTCGACATG
AGAGAGTGTGTGATGAAGAGAAACTAACGAAAGTATTTTGTTTATTCCTC
ACTCCCCGCTCCATCAGGTTCGAGGCAATCGTCGAGGCCGGCTCCAAGAG
CAGGTACATGGCCCTGTACTCGGTCTGCCTGGAAGGCATGGAGGACCGCT
TGACGATCTGCGATCTGCTGATGCTCAACGGTGACGGCCTCATCTGCCGC
CTCGAAAATTGCTTCGACGCTTCCAAGTGCCCCAAAGAGATCGTGGACGC
AGGAGCTGCCACGATCGCGGCGTTCAACGCCTAA
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