mRNA_S-dermatodea_contig10280.209.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10280.209.1
Unique NamemRNA_S-dermatodea_contig10280.209.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10280.209.1 vs. uniprot
Match: A0A6H5K3X8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3X8_9PHAE)

HSP 1 Score: 488 bits (1256), Expect = 3.230e-156
Identity = 334/660 (50.61%), Postives = 395/660 (59.85%), Query Frame = 1 
Query:    1 DDLPIVVGQQVRAPAVGA--------VVSDPQAFAVSTAQPSP---YITPHM-SGTGTWTVPGCGTSGGSNSSSGRRVPGSGGGYGG---------------VAAGDDGA--PSXXXXXXXXXXXXXXASAAGGRRFEGEKGSSSQDLLRRSXXXGKQASGGAFGGVLAIDDDSYVADGGPVLVACGQGRSMYNVRGCLSSWVLAGGGGGRPRQGSAVAEKYGSAAXXXXXGMVADGGYTREPGPGSGSWALRSEDTPAGDGGIMCSACVPSVASGQGMVPRMLVTGGKDSMLREWEVADGRPRVVAELAGHTDWISCCALMPSTTAGFPPSXXXXXXXXGSVKFWSKSFAATAPSAAALNEKSMSGKGTYASSRNGSYEGYGTGGXXXXXXAGWSLASCMPGAHGSSEFVTCCACPGGASGATAGWVATGGTDWAVRLWDVEKSRELGRLSFKGHNHPVRSVSASSDGNLLVSGGEDHKVVIWSPQSRRALATLKGHASSVNGVAIDPGMQSGQPPRWVASGGGEGFLFVWDPRNWESPVATLRGDTPVGSS----SSLGGSDLSGATL-ENGGSLRTG-SEAKLRGEHGRWEGETTGATMLNSVNCLAAGGAGSGGDWLFGGGETVVRAWQRKDGMWVGGVELHGEGLGGVASISVVE 1875
            DD+ +V+GQ V APA+ A           D   +A ++  PS    Y  P M + TG+++V G  TSGG      RR   SGG   G                AAG +G   P               AS+ GGRRF GE G+ +     R      +  GG+    L + D  YVADGGPVLVACGQG+SMY V+GC+SSWVL G                    XXXXX             P + SWALRSED PAGDGG+MCSACVPS+ASGQ      L+TGGKDS+LREWE+A+GRPR+VA ++GHTDWIS               XXXXXXXX       KS A                                   XXXXXX  WSLAS +  AHGSSEFVT            AGWVATGGTDW+VRLWDV KSRELGRLSF GH+H VRS++ SSDGNLLVSGG+DHKV++WSPQSRR +ATLK HAS+V+GVA+DPG  SG  PRW+ASGGGEGFL VWDPRN+ SPVATLRG+    S+    SSL G+  SG ++ E  GSL+ G + A+ RGE GRWEGET GATMLN+VNCLAAGGAGS GDWLF  GETVVR+W+R+DG+W GG  L GEGLGG+AS+SV+E
Sbjct:   35 DDVAVVIGQLVPAPALPAYAVSATSRATPDRTPWAATSRGPSSSPSYAAPVMHNSTGSFSVAGTSTSGGXXXXXXRRGS-SGGPVAGXXXXXXXVEEDSASAAAAGGEGTYMPVMTHTGMHNVPGCGIASSTGGRRF-GE-GAPATTAAARGAPFALEGGGGS----LPMKDGDYVADGGPVLVACGQGKSMYKVKGCISSWVLVG--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSNQSWALRSEDNPAGDGGVMCSACVPSIASGQSS--GTLITGGKDSVLREWEIAEGRPRLVAHISGHTDWISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHKSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------XXXXXXXXWSLASSVATAHGSSEFVTXXXXXXXXXXXAAGWVATGGTDWSVRLWDVVKSRELGRLSFMGHSHQVRSLACSSDGNLLVSGGDDHKVIVWSPQSRRVVATLKSHASAVHGVAVDPGTHSGDAPRWIASGGGEGFLLVWDPRNFGSPVATLRGEVAAASAAAAPSSLSGAFSSGVSVVEREGSLQGGLAGARSRGESGRWEGETAGATMLNAVNCLAAGGAGSCGDWLFAAGETVVRSWRRRDGIWHGGAGLPGEGLGGIASLSVIE 671
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BLAST of mRNA_S-dermatodea_contig10280.209.1 vs. uniprot
Match: D7G1I6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I6_ECTSI)

HSP 1 Score: 459 bits (1182), Expect = 2.270e-147
Identity = 290/546 (53.11%), Postives = 340/546 (62.27%), Query Frame = 1 
Query:  298 ASAAGGRRFEGEKGSSSQDLLRRSXXXGKQASGGAFGGVLAIDDDSYVADGGPVLVACGQGRSMYNVRGCLSSWVLAGGGGGRPRQGSAVAEKYGSAAXXXXXGMVADGGYTREPGPGSGSWALRSEDTPAGDGGIMCSACVPSVASGQGMVPRMLVTGGKDSMLREWEVADGRPRVVAELAGHTDWISCCALMPSTTAGFPPSXXXXXXXXGSVKFWSKSFAATAPSAAA------LNEKSMSGK------GTYAS-SRNGSYEGYGTGGXXXXXXAGWSLASCMPGAHGSSEFVTCCACPGGASGAT-----AGWVATGGTDWAVRLWDVEKSRELGRLSFKGHNHPVRSVSASSDGNLLVSGGEDHKVVIWSPQSRRALATLKGHASSVNGVAIDPGMQSGQPPRWVASGGGEGFLFVWDPRNWESPVATLRGDTPVGSSSSLGGSDLSGATL-ENGGSLRTG-SEAKLRGEHGRWEGETTGATMLNSVNCLAAGGAGSGGDWLFGGGETVVRAWQRKDGMWVGGVELHGEGLGGVASISVVE 1875
            AS+ GGRRF GE   ++       XXX          G L + D  YVADGGPVLVACGQG+SMYNV+GC+SSWVL GGGGG   Q  AV EK  +  XXXXX                                          ASG       L+TGGKDS+LREWE+A+GRPR+VA ++GHTDWISCCAL+PS TAG  PS         SV+FW KS AA A +AAA      L ++S  GK        +AS SR+ S    G+G XXXXXX                                      GWVATGGTDW+VRLWDV K RELGRLSF GH+HPVRS++ SSDG LLVSGG+DHKV++WSPQSRR LATLK HAS+V+GVA+DPG  SG  PRW+ASGGGEGFL VWDPRN+ SPVA LRG+      SSL  +  SG ++ E  G L+ G + A+ RGE GRWEGETTGATMLN+VNCLAAGGAGSGGDWLF  GETVVR+W+R+DG+W GG  L GEGLGG+AS+SV+E
Sbjct:   18 ASSTGGRRF-GEGAPATTXXXXXXXXXXXXXXXXXXXGSLPMKDGDYVADGGPVLVACGQGKSMYNVKGCMSSWVLVGGGGGE--QPDAVKEKMATXXXXXXXXXX----------------------------------XXXXQASGT------LITGGKDSVLREWEIAEGRPRLVAHISGHTDWISCCALVPSATAGVAPSVAVSGGRDASVRFWHKSDAAAAEAAAARAASDALAKESAQGKRKSSLRAAFASGSRSSSGRDLGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGWVATGGTDWSVRLWDVVKFRELGRLSFMGHSHPVRSLACSSDGKLLVSGGDDHKVIVWSPQSRRPLATLKSHASAVHGVAVDPGTHSGDAPRWIASGGGEGFLLVWDPRNFGSPVAILRGEVTAADPSSLSEAFSSGMSVAEREGGLQGGLAGARSRGESGRWEGETTGATMLNAVNCLAAGGAGSGGDWLFAAGETVVRSWRRRDGVWHGGAGLPGEGLGGIASLSVIE 520
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BLAST of mRNA_S-dermatodea_contig10280.209.1 vs. uniprot
Match: A0A1Y2EVM9_9BASI (Uncharacterized protein n=1 Tax=Leucosporidium creatinivorum TaxID=106004 RepID=A0A1Y2EVM9_9BASI)

HSP 1 Score: 75.5 bits (184), Expect = 5.510e-10
Identity = 37/106 (34.91%), Postives = 56/106 (52.83%), Query Frame = 1 
Query: 1192 WVATGGTDWAVRLWDVEKSRELGRLSFKGHNHPVRSVSASSDGNLLVSGGEDHKVVIWSPQSRRALATLKGHASSVNGVAIDPGMQSGQPPRWVASGGGEGFLFVW 1509
            WVA+GG D  +RLWDV + R    L        V S++ +  G+LL +G  +  V +W P+SRR +A L GH  +V GV I      G+  +W+ S   +  + +W
Sbjct:  304 WVASGGFDRKIRLWDVGEGRASSVLELPSPPASVYSLATTPSGSLLAAGTPERVVRVWDPRSRRQVARLSGHTDNVRGVLI------GEEGKWLLSASSDSTVKLW 403
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BLAST of mRNA_S-dermatodea_contig10280.209.1 vs. uniprot
Match: A0A199VEU0_ANACO (DENN domain and WD repeat-containing protein SCD1 n=2 Tax=Ananas comosus TaxID=4615 RepID=A0A199VEU0_ANACO)

HSP 1 Score: 72.0 bits (175), Expect = 6.130e-9
Identity = 42/120 (35.00%), Postives = 68/120 (56.67%), Query Frame = 1 
Query: 1186 AGWVATGGTDWAVRLWDVEKSRELGRLSFKGHNHPVRSVSASSDGNLLVSGGEDHKVVIWSPQSRRALATLKGHASSVNGVAIDPGMQSGQPPRWVASGGGEGFLFVWDPRNWESPVATL 1545
            AG+  +G TD  V++WD        R + +GH  P+R+++  SD + +VSG +DH V++W  Q+ R L  LKGH + V+ V     M SG+    V +   +G + +WD R  ++ VAT+
Sbjct:  883 AGFFISGSTDCLVKVWDPSMRGSELRATLRGHTRPIRAIN--SDRSKIVSGSDDHSVIVWDKQTFRLLEELKGHDAPVSCVR----MLSGER---VLTASHDGTVKMWDVRT-DTCVATV 992
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BLAST of mRNA_S-dermatodea_contig10280.209.1 vs. uniprot
Match: A0A804ITL0_MUSAM (UDENN domain-containing protein n=4 Tax=Musa TaxID=4640 RepID=A0A804ITL0_MUSAM)

HSP 1 Score: 72.0 bits (175), Expect = 6.180e-9
Identity = 41/120 (34.17%), Postives = 68/120 (56.67%), Query Frame = 1 
Query: 1186 AGWVATGGTDWAVRLWDVEKSRELGRLSFKGHNHPVRSVSASSDGNLLVSGGEDHKVVIWSPQSRRALATLKGHASSVNGVAIDPGMQSGQPPRWVASGGGEGFLFVWDPRNWESPVATL 1545
            AG+  +G TD  V++WD        R + KGH  P+R+++  SD + +VSG +DH +++W  Q+ + L  LKGH + V+ V     M SG+    V +   +G + +WD R  ++ VAT+
Sbjct:  884 AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRPIRAIN--SDRSKVVSGSDDHSIIVWDKQTSQLLEELKGHEAPVSCVR----MLSGER---VLTAAHDGTVKMWDVRT-DTCVATV 993
[Close]
BLAST of mRNA_S-dermatodea_contig10280.209.1 vs. uniprot
Match: A0A6J1E8E5_CUCMO (DENN domain and WD repeat-containing protein SCD1 n=3 Tax=Cucurbita TaxID=3660 RepID=A0A6J1E8E5_CUCMO)

HSP 1 Score: 71.6 bits (174), Expect = 8.100e-9
Identity = 43/120 (35.83%), Postives = 67/120 (55.83%), Query Frame = 1 
Query: 1186 AGWVATGGTDWAVRLWDVEKSRELGRLSFKGHNHPVRSVSASSDGNLLVSGGEDHKVVIWSPQSRRALATLKGHASSVNGVAIDPGMQSGQPPRWVASGGGEGFLFVWDPRNWESPVATL 1545
            AG+  +G TD  V++WD        R + KGH  PVR+++  SD   +VSG +DH V++W  Q+ + L  LKGH + V+ V     M SG+    V +   +G + +WD R  ++ VAT+
Sbjct:  883 AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTGPVRAIN--SDRGKVVSGSDDHSVIVWDKQTTQLLEELKGHDAQVSCVR----MLSGER---VLTAAHDGTVKMWDVRT-DTCVATV 992
[Close]
BLAST of mRNA_S-dermatodea_contig10280.209.1 vs. uniprot
Match: A0A059CZD1_EUCGR (UDENN domain-containing protein n=8 Tax=Myrtoideae TaxID=1699513 RepID=A0A059CZD1_EUCGR)

HSP 1 Score: 70.1 bits (170), Expect = 2.400e-8
Identity = 44/120 (36.67%), Postives = 66/120 (55.00%), Query Frame = 1 
Query: 1186 AGWVATGGTDWAVRLWDVEKSRELGRLSFKGHNHPVRSVSASSDGNLLVSGGEDHKVVIWSPQSRRALATLKGHASSVNGVAIDPGMQSGQPPRWVASGGGEGFLFVWDPRNWESPVATL 1545
            AG+  +G TD  V++WD        R + KGH   VR++S  SD   +VSG +DH V++W  Q+ R L  LKGH + V+ V     M SG+    V +   +G + +WD R  ++ VAT+
Sbjct:  886 AGFFISGSTDCLVKIWDPSLRGSELRGTLKGHTGTVRAIS--SDRGKIVSGSDDHSVIVWDKQTYRLLEELKGHDAQVSCVR----MLSGER---VLTASHDGSVKMWDVRT-DTCVATV 995
[Close]
BLAST of mRNA_S-dermatodea_contig10280.209.1 vs. uniprot
Match: A0A177UU89_9BASI (Uncharacterized protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177UU89_9BASI)

HSP 1 Score: 69.7 bits (169), Expect = 2.440e-8
Identity = 42/120 (35.00%), Postives = 64/120 (53.33%), Query Frame = 1 
Query: 1192 WVATGGTDWAVRLWDVEKSRELGRLSFKGHNHPVRSVSASSDGNLLVSGGEDHKVVIWSPQSRRALATLKGHASSVNGVAIDPGMQSGQPPRWVASGGGEGFLFVWDPRNWESPVATLRG 1551
            W+ATGGTD  +++WD++K  E+G L+  GH   + S+S  S    L+S G D ++ I+  +    L TLKGH  S+N  A+ P   SG   R   S G +  + +WD    +   +T  G
Sbjct:  224 WLATGGTDELIKIWDLKKRVEVGALT--GHEGTITSLSFPSR-TFLISTGSDGRINIFRARDWALLRTLKGHTGSINSAAVHP---SG---RLALSVGKDRTIRMWDLMRAKGAASTKLG 334
[Close]
BLAST of mRNA_S-dermatodea_contig10280.209.1 vs. uniprot
Match: A0A177VQA2_9BASI (Uncharacterized protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177VQA2_9BASI)

HSP 1 Score: 69.7 bits (169), Expect = 2.460e-8
Identity = 42/120 (35.00%), Postives = 64/120 (53.33%), Query Frame = 1 
Query: 1192 WVATGGTDWAVRLWDVEKSRELGRLSFKGHNHPVRSVSASSDGNLLVSGGEDHKVVIWSPQSRRALATLKGHASSVNGVAIDPGMQSGQPPRWVASGGGEGFLFVWDPRNWESPVATLRG 1551
            W+ATGGTD  +++WD++K  E+G L+  GH   + S+S  S    L+S G D ++ I+  +    L TLKGH  S+N  A+ P   SG   R   S G +  + +WD    +   +T  G
Sbjct:  229 WLATGGTDELIKIWDLKKRVEVGALT--GHEGTITSLSFPSR-TFLISTGSDGRINIFRARDWALLRTLKGHTGSINSAAVHP---SG---RLALSVGKDRTIRMWDLMRAKGAASTKLG 339
[Close]
BLAST of mRNA_S-dermatodea_contig10280.209.1 vs. uniprot
Match: A0A317XJ22_9BASI (WD40 repeat-like protein n=2 Tax=Testicularia cyperi TaxID=1882483 RepID=A0A317XJ22_9BASI)

HSP 1 Score: 67.4 bits (163), Expect = 1.210e-7
Identity = 42/126 (33.33%), Postives = 65/126 (51.59%), Query Frame = 1 
Query: 1174 SGATAGWVATGGTDWAVRLWDVEKSRELGRLSFKGHNHPVRSVSASSDGNLLVSGGEDHKVVIWSPQSRRALATLKGHASSVNGVAIDPGMQSGQPPRWVASGGGEGFLFVWDPRNWESPVATLRG 1551
            +GA + W+ATGGTD  V++WD+ K RE+G+L+  GH   + S+  +S   LL S   D  + ++  +    L TLKGH   +N V+  P        R   S G +  + +WD    +S  +T  G
Sbjct:  214 AGADSKWLATGGTDEIVKVWDLRKRREVGQLT--GHEGTITSLVFASRTYLLTSSA-DANINLYRTRDWALLRTLKGHIGRINSVSPHP------TGRLALSVGSDRTIRMWDLMRGQSAASTRIG 330
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10280.209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K3X8_9PHAE3.230e-15650.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1I6_ECTSI2.270e-14753.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1Y2EVM9_9BASI5.510e-1034.91Uncharacterized protein n=1 Tax=Leucosporidium cre... [more]
A0A199VEU0_ANACO6.130e-935.00DENN domain and WD repeat-containing protein SCD1 ... [more]
A0A804ITL0_MUSAM6.180e-934.17UDENN domain-containing protein n=4 Tax=Musa TaxID... [more]
A0A6J1E8E5_CUCMO8.100e-935.83DENN domain and WD repeat-containing protein SCD1 ... [more]
A0A059CZD1_EUCGR2.400e-836.67UDENN domain-containing protein n=8 Tax=Myrtoideae... [more]
A0A177UU89_9BASI2.440e-835.00Uncharacterized protein n=2 Tax=Tilletia TaxID=132... [more]
A0A177VQA2_9BASI2.460e-835.00Uncharacterized protein n=2 Tax=Tilletia TaxID=132... [more]
A0A317XJ22_9BASI1.210e-733.33WD40 repeat-like protein n=2 Tax=Testicularia cype... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10280contigS-dermatodea_contig10280:1752..6921 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score470.3
Seed ortholog evalue1.3e-129
Seed eggNOG ortholog2880.D7G1I6
EggNOG free text desc.WD repeat-containing protein
EggNOG OGsKOG0266@1,KOG0266@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size3208
Cds size1758
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10280.209.1prot_S-dermatodea_contig10280.209.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10280 1872..5591 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924149.2819498-UTR-S-dermatodea_contig10280:1751..18711622924149.2819498-UTR-S-dermatodea_contig10280:1751..1871Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10280 1752..1871 +
1694079051.238893-UTR-S-dermatodea_contig10280:1751..18711694079051.238893-UTR-S-dermatodea_contig10280:1751..1871Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10280 1752..1871 +
1622924149.3390024-UTR-S-dermatodea_contig10280:5591..69211622924149.3390024-UTR-S-dermatodea_contig10280:5591..6921Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10280 5592..6921 +
1694079051.3051212-UTR-S-dermatodea_contig10280:5591..69211694079051.3051212-UTR-S-dermatodea_contig10280:5591..6921Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10280 5592..6921 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924149.294137-CDS-S-dermatodea_contig10280:1871..25961622924149.294137-CDS-S-dermatodea_contig10280:1871..2596Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10280 1872..2596 +
1694079051.2533596-CDS-S-dermatodea_contig10280:1871..25961694079051.2533596-CDS-S-dermatodea_contig10280:1871..2596Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10280 1872..2596 +
1622924149.3059566-CDS-S-dermatodea_contig10280:3304..36801622924149.3059566-CDS-S-dermatodea_contig10280:3304..3680Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10280 3305..3680 +
1694079051.2680027-CDS-S-dermatodea_contig10280:3304..36801694079051.2680027-CDS-S-dermatodea_contig10280:3304..3680Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10280 3305..3680 +
1622924149.3185368-CDS-S-dermatodea_contig10280:4320..44521622924149.3185368-CDS-S-dermatodea_contig10280:4320..4452Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10280 4321..4452 +
1694079051.2768102-CDS-S-dermatodea_contig10280:4320..44521694079051.2768102-CDS-S-dermatodea_contig10280:4320..4452Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10280 4321..4452 +
1622924149.3288586-CDS-S-dermatodea_contig10280:5066..55911622924149.3288586-CDS-S-dermatodea_contig10280:5066..5591Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10280 5067..5591 +
1694079051.289093-CDS-S-dermatodea_contig10280:5066..55911694079051.289093-CDS-S-dermatodea_contig10280:5066..5591Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10280 5067..5591 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10280.209.1

>prot_S-dermatodea_contig10280.209.1 ID=prot_S-dermatodea_contig10280.209.1|Name=mRNA_S-dermatodea_contig10280.209.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=586bp
MSGTGTWTVPGCGTSGGSNSSSGRRVPGSGGGYGGVAAGDDGAPSMTHTG
TRRVPGCGTASAAGGRRFEGEKGSSSQDLLRRSSSSGKQASGGAFGGVLA
IDDDSYVADGGPVLVACGQGRSMYNVRGCLSSWVLAGGGGGRPRQGSAVA
EKYGSAAGGSGGGMVADGGYTREPGPGSGSWALRSEDTPAGDGGIMCSAC
VPSVASGQGMVPRMLVTGGKDSMLREWEVADGRPRVVAELAGHTDWISCC
ALMPSTTAGFPPSLAISGGRDGSVKFWSKSFAATAPSAAALNEKSMSGKG
TYASSRNGSYEGYGTGGGGGTGGAGWSLASCMPGAHGSSEFVTCCACPGG
ASGATAGWVATGGTDWAVRLWDVEKSRELGRLSFKGHNHPVRSVSASSDG
NLLVSGGEDHKVVIWSPQSRRALATLKGHASSVNGVAIDPGMQSGQPPRW
VASGGGEGFLFVWDPRNWESPVATLRGDTPVGSSSSLGGSDLSGATLENG
GSLRTGSEAKLRGEHGRWEGETTGATMLNSVNCLAAGGAGSGGDWLFGGG
ETVVRAWQRKDGMWVGGVELHGEGLGGVASISVVE*
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mRNA from alignment at S-dermatodea_contig10280:1752..6921+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10280.209.1 ID=mRNA_S-dermatodea_contig10280.209.1|Name=mRNA_S-dermatodea_contig10280.209.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5170bp|location=Sequence derived from alignment at S-dermatodea_contig10280:1752..6921+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GACGATCTCCCCATCGTCGTAGGGCAACAAGTCCGCGCGCCAGCCGTCGG
TGCTGTCGTGTCGGACCCGCAGGCCTTTGCAGTATCCACCGCGCAACCGT
CACCCTACATCACGCCCCACATGTCCGGCACCGGTACTTGGACCGTTCCT
GGCTGCGGTACGTCGGGCGGCAGCAACAGTTCGTCAGGTCGGCGTGTCCC
GGGGTCGGGGGGGGGCTACGGGGGCGTCGCGGCAGGGGACGATGGAGCTC
CTTCCATGACCCACACGGGAACGCGGCGAGTTCCCGGCTGCGGCACGGCT
AGCGCCGCCGGCGGAAGGCGGTTCGAGGGCGAGAAAGGGTCGTCCTCGCA
GGATCTCCTTCGCCGCTCGAGCTCCTCGGGGAAGCAGGCCTCCGGGGGCG
CGTTCGGGGGCGTTCTGGCGATAGACGACGACAGTTACGTCGCCGACGGA
GGGCCCGTGCTGGTCGCGTGTGGGCAGGGGCGGTCGATGTACAACGTCAG
AGGCTGTCTGTCCTCCTGGGTACTTGCCGGTGGCGGCGGCGGACGTCCGC
GACAAGGCAGTGCCGTCGCCGAAAAATATGGGAGCGCCGCTGGTGGGAGC
GGTGGTGGGATGGTCGCTGACGGCGGTTACACTCGTGAACCGGGACCTGG
GTCCGGCTCTTGGGCGCTGAGATCTGAAGACACACCGGCCGGTGACGGCG
GCATTATGTGCTCGGCCTGCGTGCCGTCGGTAGCCTCGGGCCAAGGCATG
GTTCCGCGGATGCTCGTCACTGGCGGCAAGGATAGCATGCTGAGGGAGTG
GGAGGTGGCGGATGGACGACCGCGGGTTGTGGCAGAGCTCGCCGGGTGAG
AGGCATAGCGGCACGGACCGAGTGGTTGAACGGAGCGGCCATAAGGATAT
TATGCCTGCTTGCATGCGTGCGCGCCTTGGATTTGCTTGCTTTTATACAT
ACGTGCCGTGGACCAAGCCGGCTTGCCTACGCTGCATCTCTGGTCCGATC
AGGACCGTTTTCCTTGTGGCTACACACATTGCTTTCCCCCGGACAGATCA
CCAGAGACAGGGAATGCCATGGCGATAGGCTTAGCGGTAGAGAACATGGC
ATCCGAGAGAGACGAAAACGGCAAATACCACGCAGCGCGATATGAAATCC
TTCATCCTCTCAACCCTCCCCCCCCCCCGGCCCCTTAAATGTCATGAAAA
GGAGAGATAATAAGTGTACATTGCTGAGCTGGGGAAAATTGAAGGCTGTG
ATAGAGGGTTGTGAAGCATGGGACAGCCAGACGAAGGCTATAGCTCTACT
GGGGGATAAGAAGTGGCCTGAGAAGGCGAGACGTCATGTAGACAGGATAG
GAAAAACCTTTTTGCGCCACCTTTGACAGAGGAGGAAGGAACGATTGGCC
ATCGATGATCGATCCTGTGGGAACAATGCTGCGTCCACAACTAAGGCATG
CAAAACATGAGGACGCCCCCCCCCCTCCCCCCCACCCCCACGCGCCTTTG
TCTGCCGATCGCATACTACATCTCTCCTCCCAATCAACCGCAAAACGCGG
CAGGCACACGGACTGGATTTCTTGCTGCGCTCTCATGCCCTCCACCACTG
CAGGATTCCCGCCTTCCCTGGCAATTTCCGGCGGCAGGGACGGGTCGGTC
AAGTTCTGGTCGAAATCATTCGCCGCCACCGCACCCAGCGCCGCCGCTCT
TAACGAAAAGTCAATGTCCGGCAAGGGAACGTACGCTAGTTCGCGTAACG
GGAGCTACGAAGGCTACGGCACCGGCGGAGGTGGCGGCACAGGTGGCGCG
GGCTGGTCGCTAGCTTCGTGCATGCCTGGTGCCCACGGGTCATCGGAGTT
CGTTACGTGCTGCGCGTGCCCTGGGGGGGCGTCCGGTGCGACGGCAGGGT
GGGTTGCCACGGGTGGCACCGATTGGGCGGTAAGTTTGAATTTTTCGTAT
CCGGACGCGGAGAGATTGCTCGTTGTACGCTACAATTTTCTGGGTGTGAC
TTGGGAATCGGTCGATCCTTGGGGATCCAGCCAGCCCTCTTCGCATGTTT
TTTCACACGTACGCGTAAGTTGTGCTTTTGTTTTTTTCCCCGGTTTGTGA
CCGTGTGTTGATTGCGTCTCTTATCCCGCTTCTCGTCTGCTTTGCTTGCT
CTTGAGGGCCTGAGAAGAGGGGAGAGAGGCACATGGTGTGTCTCTTATCA
GTATGCTGGAAAACGACGACTGCAGTACGCCTTTCGACGCGTGTACCACC
TGTCGCCCACCTGAAGTCTGTTTTCATCAGAGTAGCAGACACTAGATAGA
ACAGGTGTTTGTAAGCCAGCGACGTCGCAATCGTTGGCGCTACCGTGTGC
TATAGTATGAGCGTGCGGGAATTCGGTACCCTCGACCGAGTCTCCGCAAC
CGGATGCGAGTTTCGCAGTATGTTGCCCGCGAAGGGATCCACGACCTTCG
AGTACCCGCTGATTATTTCGGACAAGTAAATAGTTTCGAGTCGCGAAATA
TCACAGGTGCCATTCGTCCATGGCGGGGATAACGATCGGTTTGCTTTCGA
AACGTTGGGGGCTTCGCAGGTGCGGCTGTGGGACGTGGAGAAGTCGCGCG
AGCTGGGCAGGTTGTCGTTCAAGGGCCATAACCACCCCGTGCGATCGGTA
TCGGCCTCCTCCGATGGAAACCTTCTCGTCAGCGGCGGCGAAGATCACAA
GGTGTGCTTAAAACATGCCATCCTGTGCTTTATCCTCTGGTTGGGCGTTT
TCGGTCCGTGTGCGCGAGGTGCGTTGTATCCTCCGTCGATGTTGTGTTTT
TCTCTGGTTTCCCCGGGAAAACGACGTCACAGCGGGACTAGCGATGGCGA
AGTGTACGAGGCGGCATCCCTGATTATCGCTGCCGGCAAACTTGTGTGCT
TTTTTTCATGGCAATGGGCTTTCGGGTACGAGCGTTGTTGGAGGGTAGGG
GCAGTTTAAAGAGGCTAGAATGAACACGGCCCGTTTTGGCAACAAGCTGT
AGACGAGGCCATTGGATACGGTGCGCTCGTCACACCCCTACACCCTGCCA
TGCTATATACCGCGTACAGGTACACCACAGCTTCGCTGATTCGGCGTACT
GCGCGGTGTGAAGACAAAATTAACCTTATAAGCTAAAAACTCTTCTCTCG
TAGTGTCTCCACGATCGTCTTGCTGGCATTTTTCACGTTTCGTGCTCGAA
ACCTGAACCGAAAGTGTAATGAATAAAAAACGCAAAACGAAACGCAGTCA
ACAACAGCATGCACACAACATAGACTTCCTCATCGCGTCGCGCACCCCTC
CCACCCCTCTCCAAGGTCGTCATATGGTCGCCGCAGAGCCGAAGAGCGCT
CGCGACGCTCAAGGGCCATGCGAGCTCGGTGAACGGCGTCGCCATAGACC
CGGGGATGCAATCGGGCCAACCCCCCCGTTGGGTAGCCTCCGGCGGCGGC
GAAGGGTTTCTTTTCGTGTGGGACCCTCGAAACTGGGAGTCCCCCGTGGC
CACCCTCCGAGGCGATACGCCGGTGGGCTCGTCGTCTTCCCTCGGCGGTA
GCGACCTTTCTGGGGCTACACTAGAGAACGGAGGCAGCCTCCGTACGGGA
TCGGAGGCAAAGCTCAGGGGCGAACACGGGAGGTGGGAAGGTGAGACAAC
GGGCGCCACGATGCTGAACAGCGTGAACTGCTTGGCGGCGGGCGGGGCCG
GGAGCGGGGGGGACTGGCTGTTTGGAGGGGGCGAGACGGTTGTCCGCGCT
TGGCAGCGGAAGGACGGCATGTGGGTGGGCGGGGTGGAGCTCCACGGGGA
GGGACTAGGAGGGGTGGCCAGCATTTCGGTGGTGGAGTAGCGGTGGGCGT
GGTGTACGCGCTGTCTCCTTCGTGGGTTCGCTCCGTGCTTTTGTAAACGA
TGTGTTTCGGGAGTTTTTTTAGGGAGAAATCGCTGATACTGCCCCGGATT
GCGCAGCGTAGCAGGACGATGTGCTCGAACAAACGGAAATTCGCTTCACT
CCTACCTGGCGTGTTGTGACGGTCCTATATGGTTTCCAGCCGATAGTGTC
ACGCTTTTTGTTGGGATGTAACCAAGACGGATGCTCCCGTGCATGTAGGT
TTTTGAGGTAGCGTGCCGCGGACGTTTGCCTGTCCTTCTGCTGCGATTGC
ATGGCAGTCAGAGGTCTAAATAAAGCTAGCCTTTCAAGTTTGCTTTGAAT
ACCATGCCATATTCTGACGTGAGTATCGTCCTCTGTTAAGCCTGCGCCTC
CGTTTTTGAAACTTTTCACGTCTTCCGAAGGCGCTGAAGTTCATAACACA
GGCCTCGTTTTTGTTTTGTTTTTTTTGTCGAACAACGTACATGTAGAGCT
CGAATGAGATAGGTTTCGCTCGTTGGGAAGGACCCGCACATTACTTTCCC
GCAGTATAAGTATTGCACTTGGGGAGTCGCCGGACCCATGTTCTACTAAG
GGCATTTGTTATTTCGGGCGGCCGATTAAATCATATCAGGTTTGTGTGTC
ATACAGCGAAGTTCACCCGGGTCCTGTCCCGATGATTTATGGATTGTACG
TCTCCTATGTTCTGTTTCTGTATAAAAACATTTTCATCCGAAGAGCGGAT
GCACGCCATCCACTACCGTAGTACATTGTTTTTCCGTACGCTATTGGTTT
CTTGAATTGTTGCCATGACTGGCGGGGTGGCTCATCTCTGCCGCGCCCCT
GCCCCGATGGTATGCTTCGATTCCTCCAGCATTTGGCATGCCAGCAGCAG
CGCAAGCAAACAATGCTGCTTAGTCCTGTTCAAACCGTTCGAAATTTGTT
TAAGGAGCAGACGGATTTGTGAGTCTCTCAAGGGCAAGACCGTTTCTCGG
CATGTCCTTGACGAAGACCCATGGCGGGTGGCGAAAAGCACGGTGTATGA
CGCGAAAGAACGACCACGTATGTGTCCACACCGCTAAGTGTCGCGCGTGT
TTCGGCCCCACGGTTTTCAACCCTTGCCTCAGGCATTCACTTGTCGGGGT
GTCCGTTTTTATTGAGATGGGGCATACGTAGTGACTGTGTTCCAGCTTCT
GATGGACTGGGACAGGCAAGAGCACTGCCCGCATGGCATACCGGGGTTCG
ACCTTTTTGCTTCACCATGGGGTGTTTATTTATGGTTTTGAGGCGCTTCC
GTGATTGGTCCGGAATGGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10280:1752..6921+

>mRNA_S-dermatodea_contig10280.209.1 ID=mRNA_S-dermatodea_contig10280.209.1|Name=mRNA_S-dermatodea_contig10280.209.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=3516bp|location=Sequence derived from alignment at S-dermatodea_contig10280:1752..6921+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCCGGCACCGGTACTTGGACCGTTCCTGGCTGCGGTACGTCGGGCGG
CAGCAACAGTTCGTCAGGTCGGCGTGTCCCGGGGTCGGGGGGGGGCTACG
GGGGCGTCGCGGCAGGGGACGATGGAGCTCCTTCCATGACCCACACGGGA
ACGCGGCGAGTTCCCGGCTGCGGCACGGCTAGCGCCGCCGGCGGAAGGCG
GTTCGAGGGCGAGAAAGGGTCGTCCTCGCAGGATCTCCTTCGCCGCTCGA
GCTCCTCGGGGAAGCAGGCCTCCGGGGGCGCGTTCGGGGGCGTTCTGGCG
ATAGACGACGACAGTTACGTCGCCGACGGAGGGCCCGTGCTGGTCGCGTG
TGGGCAGGGGCGGTCGATGTACAACGTCAGAGGCTGTCTGTCCTCCTGGG
TACTTGCCGGTGGCGGCGGCGGACGTCCGCGACAAGGCAGTGCCGTCGCC
GAAAAATATGGGAGCGCCGCTGGTGGGAGCGGTGGTGGGATGGTCGCTGA
CGGCGGTTACACTCGTGAACCGGGACCTGGGTCCGGCTCTTGGGCGCTGA
GATCTGAAGACACACCGGCCGGTGACGGCGGCATTATGTGCTCGGCCTGC
GTGCCGTCGGTAGCCTCGGGCCAAGGCATGGTTCCGCGGATGCTCGTCAC
TGGCGGCAAGGATAGCATGCTGAGGGAGTGGGAGGTGGCGGATGGACGAC
CGCGGGTTGTGGCAGAGCTCGCCGGATGTCCGGCACCGGTACTTGGACCG
TTCCTGGCTGCGGTACGTCGGGCGGCAGCAACAGTTCGTCAGGTCGGCGT
GTCCCGGGGTCGGGGGGGGGCTACGGGGGCGTCGCGGCAGGGGACGATGG
AGCTCCTTCCATGACCCACACGGGAACGCGGCGAGTTCCCGGCTGCGGCA
CGGCTAGCGCCGCCGGCGGAAGGCGGTTCGAGGGCGAGAAAGGGTCGTCC
TCGCAGGATCTCCTTCGCCGCTCGAGCTCCTCGGGGAAGCAGGCCTCCGG
GGGCGCGTTCGGGGGCGTTCTGGCGATAGACGACGACAGTTACGTCGCCG
ACGGAGGGCCCGTGCTGGTCGCGTGTGGGCAGGGGCGGTCGATGTACAAC
GTCAGAGGCTGTCTGTCCTCCTGGGTACTTGCCGGTGGCGGCGGCGGACG
TCCGCGACAAGGCAGTGCCGTCGCCGAAAAATATGGGAGCGCCGCTGGTG
GGAGCGGTGGTGGGATGGTCGCTGACGGCGGTTACACTCGTGAACCGGGA
CCTGGGTCCGGCTCTTGGGCGCTGAGATCTGAAGACACACCGGCCGGTGA
CGGCGGCATTATGTGCTCGGCCTGCGTGCCGTCGGTAGCCTCGGGCCAAG
GCATGGTTCCGCGGATGCTCGTCACTGGCGGCAAGGATAGCATGCTGAGG
GAGTGGGAGGTGGCGGATGGACGACCGCGGGTTGTGGCAGAGCTCGCCGG
GCACACGGACTGGATTTCTTGCTGCGCTCTCATGCCCTCCACCACTGCAG
GATTCCCGCCTTCCCTGGCAATTTCCGGCGGCAGGGACGGGTCGGTCAAG
TTCTGGTCGAAATCATTCGCCGCCACCGCACCCAGCGCCGCCGCTCTTAA
CGAAAAGTCAATGTCCGGCAAGGGAACGTACGCTAGTTCGCGTAACGGGA
GCTACGAAGGCTACGGCACCGGCGGAGGTGGCGGCACAGGTGGCGCGGGC
TGGTCGCTAGCTTCGTGCATGCCTGGTGCCCACGGGTCATCGGAGTTCGT
TACGTGCTGCGCGTGCCCTGGGGGGGCGTCCGGTGCGACGGCAGGGTGGG
TTGCCACGGGTGGCACCGATTGGGCGGCACACGGACTGGATTTCTTGCTG
CGCTCTCATGCCCTCCACCACTGCAGGATTCCCGCCTTCCCTGGCAATTT
CCGGCGGCAGGGACGGGTCGGTCAAGTTCTGGTCGAAATCATTCGCCGCC
ACCGCACCCAGCGCCGCCGCTCTTAACGAAAAGTCAATGTCCGGCAAGGG
AACGTACGCTAGTTCGCGTAACGGGAGCTACGAAGGCTACGGCACCGGCG
GAGGTGGCGGCACAGGTGGCGCGGGCTGGTCGCTAGCTTCGTGCATGCCT
GGTGCCCACGGGTCATCGGAGTTCGTTACGTGCTGCGCGTGCCCTGGGGG
GGCGTCCGGTGCGACGGCAGGGTGGGTTGCCACGGGTGGCACCGATTGGG
CGGTGCGGCTGTGGGACGTGGAGAAGTCGCGCGAGCTGGGCAGGTTGTCG
TTCAAGGGCCATAACCACCCCGTGCGATCGGTATCGGCCTCCTCCGATGG
AAACCTTCTCGTCAGCGGCGGCGAAGATCACAAGGTGCGGCTGTGGGACG
TGGAGAAGTCGCGCGAGCTGGGCAGGTTGTCGTTCAAGGGCCATAACCAC
CCCGTGCGATCGGTATCGGCCTCCTCCGATGGAAACCTTCTCGTCAGCGG
CGGCGAAGATCACAAGGTCGTCATATGGTCGCCGCAGAGCCGAAGAGCGC
TCGCGACGCTCAAGGGCCATGCGAGCTCGGTGAACGGCGTCGCCATAGAC
CCGGGGATGCAATCGGGCCAACCCCCCCGTTGGGTAGCCTCCGGCGGCGG
CGAAGGGTTTCTTTTCGTGTGGGACCCTCGAAACTGGGAGTCCCCCGTGG
CCACCCTCCGAGGCGATACGCCGGTGGGCTCGTCGTCTTCCCTCGGCGGT
AGCGACCTTTCTGGGGCTACACTAGAGAACGGAGGCAGCCTCCGTACGGG
ATCGGAGGCAAAGCTCAGGGGCGAACACGGGAGGTGGGAAGGTGAGACAA
CGGGCGCCACGATGCTGAACAGCGTGAACTGCTTGGCGGCGGGCGGGGCC
GGGAGCGGGGGGGACTGGCTGTTTGGAGGGGGCGAGACGGTTGTCCGCGC
TTGGCAGCGGAAGGACGGCATGTGGGTGGGCGGGGTGGAGCTCCACGGGG
AGGGACTAGGAGGGGTGGCCAGCATTTCGGTGGTGGAGTAGGTCGTCATA
TGGTCGCCGCAGAGCCGAAGAGCGCTCGCGACGCTCAAGGGCCATGCGAG
CTCGGTGAACGGCGTCGCCATAGACCCGGGGATGCAATCGGGCCAACCCC
CCCGTTGGGTAGCCTCCGGCGGCGGCGAAGGGTTTCTTTTCGTGTGGGAC
CCTCGAAACTGGGAGTCCCCCGTGGCCACCCTCCGAGGCGATACGCCGGT
GGGCTCGTCGTCTTCCCTCGGCGGTAGCGACCTTTCTGGGGCTACACTAG
AGAACGGAGGCAGCCTCCGTACGGGATCGGAGGCAAAGCTCAGGGGCGAA
CACGGGAGGTGGGAAGGTGAGACAACGGGCGCCACGATGCTGAACAGCGT
GAACTGCTTGGCGGCGGGCGGGGCCGGGAGCGGGGGGGACTGGCTGTTTG
GAGGGGGCGAGACGGTTGTCCGCGCTTGGCAGCGGAAGGACGGCATGTGG
GTGGGCGGGGTGGAGCTCCACGGGGAGGGACTAGGAGGGGTGGCCAGCAT
TTCGGTGGTGGAGTAG
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