mRNA_S-dermatodea_contig10277.205.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10277.205.1
Unique NamemRNA_S-dermatodea_contig10277.205.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10277.205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10277contigS-dermatodea_contig10277:7059..7843 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size785
Cds size486
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10277.205.1prot_S-dermatodea_contig10277.205.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10277 7116..7601 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924149.0892327-UTR-S-dermatodea_contig10277:7058..71151622924149.0892327-UTR-S-dermatodea_contig10277:7058..7115Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10277 7059..7115 +
1694079051.1594896-UTR-S-dermatodea_contig10277:7058..71151694079051.1594896-UTR-S-dermatodea_contig10277:7058..7115Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10277 7059..7115 +
1622924149.1116872-UTR-S-dermatodea_contig10277:7601..78431622924149.1116872-UTR-S-dermatodea_contig10277:7601..7843Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10277 7602..7843 +
1694079051.1782386-UTR-S-dermatodea_contig10277:7601..78431694079051.1782386-UTR-S-dermatodea_contig10277:7601..7843Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10277 7602..7843 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924149.1034827-CDS-S-dermatodea_contig10277:7115..76011622924149.1034827-CDS-S-dermatodea_contig10277:7115..7601Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10277 7116..7601 +
1694079051.1702867-CDS-S-dermatodea_contig10277:7115..76011694079051.1702867-CDS-S-dermatodea_contig10277:7115..7601Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10277 7116..7601 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10277.205.1

>prot_S-dermatodea_contig10277.205.1 ID=prot_S-dermatodea_contig10277.205.1|Name=mRNA_S-dermatodea_contig10277.205.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=162bp
MAFWGAAYIAGAHNAGCQTMTDSYVTRNRQKHCRRVEGKRRVRQAQGLKS
PSRHCFIFTPLPSLPLATQGRCAEKWGSHPMMPSDRKKRRRTKCRECSGR
LHYLLWSYTHPTLPPQAQRTRTPLRSTTYIVRQHPQYPTLQQSSAALFYD
YTRSSREFQQT*
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mRNA from alignment at S-dermatodea_contig10277:7059..7843+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10277.205.1 ID=mRNA_S-dermatodea_contig10277.205.1|Name=mRNA_S-dermatodea_contig10277.205.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=785bp|location=Sequence derived from alignment at S-dermatodea_contig10277:7059..7843+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATAAAGCTCACGGCGTCGCGATTTGTTTCCTCACGATTTGTGAATCTCCT
CTGGAGAATGGCGTTTTGGGGGGCGGCTTATATAGCAGGGGCACACAACG
CCGGGTGCCAAACCATGACTGATTCTTATGTAACTCGAAATCGGCAAAAA
CATTGTAGGCGAGTCGAGGGCAAGCGCCGGGTGCGGCAAGCACAAGGTTT
AAAATCACCGTCGCGACACTGTTTTATTTTCACCCCGTTGCCGTCGCTAC
CCTTGGCCACACAGGGAAGATGTGCAGAGAAGTGGGGAAGCCATCCAATG
ATGCCCAGCGATCGCAAGAAACGCCGACGAACAAAATGCCGAGAGTGTTC
CGGTCGACTACACTACCTACTGTGGAGCTACACCCATCCAACACTTCCTC
CACAAGCGCAACGCACACGCACGCCGCTACGCTCCACCACGTATATTGTC
AGACAACACCCGCAGTATCCCACCTTACAGCAAAGCAGCGCCGCACTCTT
CTACGACTACACACGAAGTTCGCGAGAGTTCCAACAAACGTAATACCACG
TTAAGCTCGGCCTACAGGAGTAAAAACCGCTCAAAAGAAGGCTAATAAGA
GCAGGCTACGTATCATACAGGAGGGAAGTACTTCCATCATTTTTTTGCTT
TGCCCGCCGACGCTTTGGTGCCCTTCTTGGCCGAAGAAGAGGAAGAAGAG
CCCTTCGTCGAGCCTTTTTTCTTCCCCGTGGAAGTTTTTCGGCCCGTTTT
CGGCGTCCGACCGCCGCCCCCCTTTTGGTCCGCAT
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Coding sequence (CDS) from alignment at S-dermatodea_contig10277:7059..7843+

>mRNA_S-dermatodea_contig10277.205.1 ID=mRNA_S-dermatodea_contig10277.205.1|Name=mRNA_S-dermatodea_contig10277.205.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=972bp|location=Sequence derived from alignment at S-dermatodea_contig10277:7059..7843+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGTTTTGGGGGGCGGCTTATATAGCAGGGGCACACAACGCCGGGTG
CCAAACCATGACTGATTCTTATGTAACTCGAAATCGGCAAAAACATTGTA
GGCGAGTCGAGGGCAAGCGCCGGGTGCGGCAAGCACAAGGTTTAAAATCA
CCGTCGCGACACTGTTTTATTTTCACCCCGTTGCCGTCGCTACCCTTGGC
CACACAGGGAAGATGTGCAGAGAAGTGGGGAAGCCATCCAATGATGCCCA
GCGATCGCAAGAAACGCCGACGAACAAAATGCCGAGAGTGTTCCGGTCGA
CTACACTACCTACTGTGGAGCTACACCCATCCAACACTTCCTCCACAAGC
GCAACGCACACGCACGCCGCTACGCTCCACCACGTATATTGTCAGACAAC
ACCCGCAGTATCCCACCTTACAGCAAAGCAGCGCCGCACTCTTCTACGAC
TACACACGAAGTTCGCGAGAGTTCCAACAAACGTAAATGGCGTTTTGGGG
GGCGGCTTATATAGCAGGGGCACACAACGCCGGGTGCCAAACCATGACTG
ATTCTTATGTAACTCGAAATCGGCAAAAACATTGTAGGCGAGTCGAGGGC
AAGCGCCGGGTGCGGCAAGCACAAGGTTTAAAATCACCGTCGCGACACTG
TTTTATTTTCACCCCGTTGCCGTCGCTACCCTTGGCCACACAGGGAAGAT
GTGCAGAGAAGTGGGGAAGCCATCCAATGATGCCCAGCGATCGCAAGAAA
CGCCGACGAACAAAATGCCGAGAGTGTTCCGGTCGACTACACTACCTACT
GTGGAGCTACACCCATCCAACACTTCCTCCACAAGCGCAACGCACACGCA
CGCCGCTACGCTCCACCACGTATATTGTCAGACAACACCCGCAGTATCCC
ACCTTACAGCAAAGCAGCGCCGCACTCTTCTACGACTACACACGAAGTTC
GCGAGAGTTCCAACAAACGTAA
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