mRNA_S-dermatodea_contig10273.203.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10273.203.1
Unique NamemRNA_S-dermatodea_contig10273.203.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10273.203.1 vs. uniprot
Match: A0A6H5KRC0_9PHAE (N-acetyltransferase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRC0_9PHAE)

HSP 1 Score: 234 bits (598), Expect = 1.830e-68
Identity = 167/398 (41.96%), Postives = 206/398 (51.76%), Query Frame = 1 
Query:    4 GNAVRARIAGVYGVPQSGVVAHTGDVFVCRV-----------TDEGYGEVGVEEPEEFADVAQQQEF---------------LSVSA-EFRRSKSLVTFAVVLSAQDTRTR-RWSVCMEQLGQCIRPTEQGAGAIFSGKLRHATVALQRPGASLAVQHGDIQEDAASRSSPALVLRGFASILHPRVREDTARWQWGSPAWHVDAPWVKDEDILNRVWSVEGESDDTMADAAGSVLPASTPEANAPGTVSEGTT------------FNRMNSSAAHRYYRQGLGGMGVPVVDDQGRPAIDLVED----KPLWR--MPGSREKTTEVTVSAVLRRRYAWDRRRK------------------------------------RVVVGKAGLSTEAGTSPRMD 951
            G+ VRAR+AG+YGV +S +V +   +FVC+V             EG G   V    E  D A                    LS+ A +FRRS+SL+TF+V +S +D      W+VC+EQ G+C RP  QG G IFSGKLRHA++ +   GA      G+  E       PAL+LRGFA+I HP V E +ARWQWGSPAWH+DAPW++D+DIL+RVW   G   D  A+AA    P   P A      SE  T              RMN++ AHRYYRQGL GM VPVVD  GRP IDLVED      LWR  + G+ +K  EVT+ AVLRRR+ W RRR+                                         KAGLST AG SPRMD
Sbjct:  152 GDRVRARVAGLYGVQESSIVVNA--LFVCKVGLNVDGLRDEVLREGQGR-SVGTLHEAVDRAAAXXXXXXXXXXXXXXXXXQLSIEASDFRRSRSLLTFSVAISTEDALLPCPWAVCLEQRGECFRPGGQGTGVIFSGKLRHASLRIPH-GAGAPASSGN-SERPRQDHPPALLLRGFANIRHPLVAEGSARWQWGSPAWHIDAPWIRDQDILDRVWVAGGT--DLGAEAADGRHP---PPAGGAAAASEAGTAPAGVDPPRSNYLQRMNTTLAHRYYRQGLAGMDVPVVDSAGRPVIDLVEDGGGGSSLWRRGVIGA-DKPGEVTLKAVLRRRFPWSRRRQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAGLSTAAGASPRMD 538
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BLAST of mRNA_S-dermatodea_contig10273.203.1 vs. uniprot
Match: D8LFR9_ECTSI (N-acetyltransferase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFR9_ECTSI)

HSP 1 Score: 212 bits (540), Expect = 2.400e-61
Identity = 125/243 (51.44%), Postives = 147/243 (60.49%), Query Frame = 1 
Query:  283 GQCIRPTEQGAGAIFSGKLRHATVALQRPGASLAVQHGD-------IQEDAASRSSPALVLRGFASILHPRVREDTARWQWGSPAWHVDAPWVKDEDILNRVWSVEGESDDTMADAAGSVLPASTPE-------ANAPGTVSEGTTF--NRMNSSAAHRYYRQGLGGMGVPVVDDQGRPAIDLVEDKPL--WRMPG--SREKTTEVTVSAVLRRRYAWDRRRKRVVVGKAGLSTEAGTSPRMD 951
            G+C RP  QG G IFSGKLRHA         SL + HGD         E +     P L+LRGFASI HP V E++ARWQWGSPAWH+DAPW++D+DIL+RVW   G   D  A+AA    P              AP  V    ++   RMN++ AHRYYRQGL GM VPVVD  GRP IDLVED  +  W   G    +K  EVT+ AVLRRR+ W RRR+   VGKAGLST+AG SPRMD
Sbjct:  152 GECFRPGGQGTGIIFSGKLRHA---------SLRIPHGDGAPAGSGNSEGSRQEHPPVLLLRGFASIQHPSVAEESARWQWGSPAWHIDAPWIRDQDILDRVWVASGS--DLGAEAADGRHPXXXXXXXXXXXXGTAPAGVDPPRSYYLQRMNTTLAHRYYRQGLAGMDVPVVDSAGRPVIDLVEDGGVSSWWRRGVIGADKPGEVTLKAVLRRRFPWSRRRQ---VGKAGLSTDAGASPRMD 380
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BLAST of mRNA_S-dermatodea_contig10273.203.1 vs. uniprot
Match: A0A836CMF2_9STRA (N-acetyltransferase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMF2_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.170e-16
Identity = 74/224 (33.04%), Postives = 104/224 (46.43%), Query Frame = 1 
Query:  307 QGAGAIFSGKLRH-ATVALQRPGASLAVQHGDIQE-DAASRSSP----ALVLRGFASILHPRVREDTARWQWGSPAWHVDAPWVKDEDILNRVWSVEGESDDTMADAAGSVLPASTPEANAPGTVSEGTTFN-RMNSSAAHRYYRQGLGGMGVPVVDDQGRPAIDLVEDKPLWRMPGSREKTTEVTVSAVLRRRYAWDR--RRKRVVVGKAGLSTEAGTSPRMD 951
            +G GA+   KLRH AT+ +  P       HG   +  +AS   P    A VL G A ++HP +R D   W+ G+PAWHVD PW+++ ++L+R W V+       A      L   +  A A  T SEG  F   +   AAHRY RQ   G   P V  Q            L R   + E T          +R AW R  +++R+ +G+AG  +  G+S  MD
Sbjct:  222 RGTGALLCSKLRHTATLHVNAP-------HGTAADRGSASPHEPGAIAAAVLCGTAHLVHPALRGDIEHWRDGAPAWHVDRPWLRNSEVLDRCWRVD------PAQGGACALQQRSDAAPADSTASEGQRFALTLLDCAAHRYLRQR--GSAAPEVTLQ------------LQREGKTEEYTMRAYAECPGPQRRAWFRTNKQRRICIGRAGFRSTTGSSAAMD 418
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BLAST of mRNA_S-dermatodea_contig10273.203.1 vs. uniprot
Match: A0A835ZI96_9STRA (N-acetyltransferase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI96_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.900e-15
Identity = 73/220 (33.18%), Postives = 101/220 (45.91%), Query Frame = 1 
Query:  316 GAIFSGKLRHATVALQRPGASLAVQHGDIQE-DAASRSSP----ALVLRGFASILHPRVREDTARWQWGSPAWHVDAPWVKDEDILNRVWSVEGESDDTMADAAGSVLPASTPEANAPGTVSEGTTFNRMN-SSAAHRYYRQGLGGMGVPVVDDQGRPAIDLVEDKPLWRMPGSREKTTEVTVSAVLRRRYAW--DRRRKRVVVGKAGLSTEAGTSPRMD 951
            GA+   KLRH TV L     +++  HG   +  +AS   P    A VL G A ++HP +R D   W+ G+PAWHVD PW+++ ++L+R W V+       A      L   +  A A  T SEG  F       AAHRY RQ   G   P V  Q            L R   + E T          RR AW    +++R+ +G+AG  +  G+S  MD
Sbjct:  276 GALLCSKLRH-TVTL-----NVSAPHGTAADRGSASPREPGAIVAAVLFGTAHLVHPALRGDIEHWRDGAPAWHVDRPWLRNSEVLDRCWRVD------PAQGGACALQQRSDAAPADSTASEGQRFALTPLDGAAHRYLRQR--GSAAPEVTLQ------------LQREGKTDEYTMHAYAECPGPRRRAWRGTNKQRRICIGRAGFRSTTGSSAAMD 469
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10273.203.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KRC0_9PHAE1.830e-6841.96N-acetyltransferase domain-containing protein n=1 ... [more]
D8LFR9_ECTSI2.400e-6151.44N-acetyltransferase domain-containing protein n=1 ... [more]
A0A836CMF2_9STRA1.170e-1633.04N-acetyltransferase domain-containing protein n=1 ... [more]
A0A835ZI96_9STRA1.900e-1533.18N-acetyltransferase domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10273contigS-dermatodea_contig10273:3785..4735 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAcetyltransferase (GNAT) domain protein
Ec32 orthologEc-01_001170.1
Exons1
Model size951
Cds size951
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924148.998638-CDS-S-dermatodea_contig10273:3784..47351622924148.998638-CDS-S-dermatodea_contig10273:3784..4735Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10273 3785..4735 +
1694079051.1128328-CDS-S-dermatodea_contig10273:3784..47351694079051.1128328-CDS-S-dermatodea_contig10273:3784..4735Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10273 3785..4735 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10273.203.1prot_S-dermatodea_contig10273.203.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10273 3785..4735 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10273.203.1

>prot_S-dermatodea_contig10273.203.1 ID=prot_S-dermatodea_contig10273.203.1|Name=mRNA_S-dermatodea_contig10273.203.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=317bp
VGNAVRARIAGVYGVPQSGVVAHTGDVFVCRVTDEGYGEVGVEEPEEFAD
VAQQQEFLSVSAEFRRSKSLVTFAVVLSAQDTRTRRWSVCMEQLGQCIRP
TEQGAGAIFSGKLRHATVALQRPGASLAVQHGDIQEDAASRSSPALVLRG
FASILHPRVREDTARWQWGSPAWHVDAPWVKDEDILNRVWSVEGESDDTM
ADAAGSVLPASTPEANAPGTVSEGTTFNRMNSSAAHRYYRQGLGGMGVPV
VDDQGRPAIDLVEDKPLWRMPGSREKTTEVTVSAVLRRRYAWDRRRKRVV
VGKAGLSTEAGTSPRMD
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mRNA from alignment at S-dermatodea_contig10273:3785..4735+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10273.203.1 ID=mRNA_S-dermatodea_contig10273.203.1|Name=mRNA_S-dermatodea_contig10273.203.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=951bp|location=Sequence derived from alignment at S-dermatodea_contig10273:3785..4735+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGGGAAACGCGGTCCGCGCGCGAATCGCGGGCGTGTACGGGGTGCCACA
GAGCGGTGTCGTGGCCCACACGGGCGACGTGTTCGTGTGTCGGGTCACCG
ACGAAGGATACGGGGAGGTCGGGGTTGAGGAGCCGGAGGAATTCGCGGAC
GTTGCCCAACAGCAGGAGTTTTTGTCGGTTTCGGCCGAGTTCCGGCGGAG
CAAGTCTCTGGTCACGTTCGCCGTGGTGCTGAGTGCTCAGGATACGCGGA
CCCGGCGCTGGTCGGTATGCATGGAGCAGCTCGGGCAGTGCATTCGGCCG
ACGGAGCAGGGGGCCGGGGCGATATTCTCGGGCAAGCTGCGCCACGCGAC
CGTGGCCTTGCAGCGTCCCGGAGCTTCCCTCGCTGTTCAACACGGGGACA
TACAGGAAGACGCCGCGTCACGAAGCTCGCCTGCGCTTGTGCTCCGCGGT
TTCGCTTCTATCCTCCACCCCCGCGTCCGAGAAGACACCGCTAGGTGGCA
GTGGGGCTCTCCCGCCTGGCACGTAGACGCTCCTTGGGTCAAAGACGAGG
ACATCCTTAATCGGGTCTGGTCAGTAGAGGGCGAGTCGGACGATACCATG
GCCGACGCGGCGGGATCAGTGTTGCCGGCATCGACCCCCGAAGCAAACGC
ACCCGGCACCGTTTCGGAGGGCACCACTTTTAACCGGATGAATAGCTCAG
CTGCTCACCGTTACTATCGGCAGGGGCTCGGGGGCATGGGCGTCCCCGTA
GTCGACGATCAGGGCCGACCGGCGATCGACCTAGTGGAGGACAAGCCGTT
GTGGCGTATGCCAGGATCGCGCGAAAAAACGACCGAGGTGACGGTTTCAG
CCGTGCTTCGAAGGCGTTACGCGTGGGACCGTCGACGGAAGCGGGTGGTG
GTGGGCAAGGCGGGGCTGAGCACGGAAGCCGGCACCTCCCCTCGAATGGA
C
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Coding sequence (CDS) from alignment at S-dermatodea_contig10273:3785..4735+

>mRNA_S-dermatodea_contig10273.203.1 ID=mRNA_S-dermatodea_contig10273.203.1|Name=mRNA_S-dermatodea_contig10273.203.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1902bp|location=Sequence derived from alignment at S-dermatodea_contig10273:3785..4735+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGGGAAACGCGGTCCGCGCGCGAATCGCGGGCGTGTACGGGGTGCCACA
GAGCGGTGTCGTGGCCCACACGGGCGACGTGTTCGTGTGTCGGGTCACCG
ACGAAGGATACGGGGAGGTCGGGGTTGAGGAGCCGGAGGAATTCGCGGAC
GTTGCCCAACAGCAGGAGTTTTTGTCGGTTTCGGCCGAGTTCCGGCGGAG
CAAGTCTCTGGTCACGTTCGCCGTGGTGCTGAGTGCTCAGGATACGCGGA
CCCGGCGCTGGTCGGTATGCATGGAGCAGCTCGGGCAGTGCATTCGGCCG
ACGGAGCAGGGGGCCGGGGCGATATTCTCGGGCAAGCTGCGCCACGCGAC
CGTGGCCTTGCAGCGTCCCGGAGCTTCCCTCGCTGTTCAACACGGGGACA
TACAGGAAGACGCCGCGTCACGAAGCTCGCCTGCGCTTGTGCTCCGCGGT
TTCGCTTCTATCCTCCACCCCCGCGTCCGAGAAGACACCGCTAGGTGGCA
GTGGGGCTCTCCCGCCTGGCACGTAGACGCTCCTTGGGTCAAAGACGAGG
ACATCCTTAATCGGGTCTGGTCAGTAGAGGGCGAGTCGGACGATACCATG
GCCGACGCGGCGGGATCAGTGTTGCCGGCATCGACCCCCGAAGCAAACGC
ACCCGGCACCGTTTCGGAGGGCACCACTTTTAACCGGATGAATAGCTCAG
CTGCTCACCGTTACTATCGGCAGGGGCTCGGGGGCATGGGCGTCCCCGTA
GTCGACGATCAGGGCCGACCGGCGATCGACCTAGTGGAGGACAAGCCGTT
GTGGCGTATGCCAGGATCGCGCGAAAAAACGACCGAGGTGACGGTTTCAG
CCGTGCTTCGAAGGCGTTACGCGTGGGACCGTCGACGGAAGCGGGTGGTG
GTGGGCAAGGCGGGGCTGAGCACGGAAGCCGGCACCTCCCCTCGAATGGA
CGTGGGAAACGCGGTCCGCGCGCGAATCGCGGGCGTGTACGGGGTGCCAC
AGAGCGGTGTCGTGGCCCACACGGGCGACGTGTTCGTGTGTCGGGTCACC
GACGAAGGATACGGGGAGGTCGGGGTTGAGGAGCCGGAGGAATTCGCGGA
CGTTGCCCAACAGCAGGAGTTTTTGTCGGTTTCGGCCGAGTTCCGGCGGA
GCAAGTCTCTGGTCACGTTCGCCGTGGTGCTGAGTGCTCAGGATACGCGG
ACCCGGCGCTGGTCGGTATGCATGGAGCAGCTCGGGCAGTGCATTCGGCC
GACGGAGCAGGGGGCCGGGGCGATATTCTCGGGCAAGCTGCGCCACGCGA
CCGTGGCCTTGCAGCGTCCCGGAGCTTCCCTCGCTGTTCAACACGGGGAC
ATACAGGAAGACGCCGCGTCACGAAGCTCGCCTGCGCTTGTGCTCCGCGG
TTTCGCTTCTATCCTCCACCCCCGCGTCCGAGAAGACACCGCTAGGTGGC
AGTGGGGCTCTCCCGCCTGGCACGTAGACGCTCCTTGGGTCAAAGACGAG
GACATCCTTAATCGGGTCTGGTCAGTAGAGGGCGAGTCGGACGATACCAT
GGCCGACGCGGCGGGATCAGTGTTGCCGGCATCGACCCCCGAAGCAAACG
CACCCGGCACCGTTTCGGAGGGCACCACTTTTAACCGGATGAATAGCTCA
GCTGCTCACCGTTACTATCGGCAGGGGCTCGGGGGCATGGGCGTCCCCGT
AGTCGACGATCAGGGCCGACCGGCGATCGACCTAGTGGAGGACAAGCCGT
TGTGGCGTATGCCAGGATCGCGCGAAAAAACGACCGAGGTGACGGTTTCA
GCCGTGCTTCGAAGGCGTTACGCGTGGGACCGTCGACGGAAGCGGGTGGT
GGTGGGCAAGGCGGGGCTGAGCACGGAAGCCGGCACCTCCCCTCGAATGG
AC
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