mRNA_S-dermatodea_contig10273.202.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10273.202.1
Unique NamemRNA_S-dermatodea_contig10273.202.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10273.202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10273contigS-dermatodea_contig10273:1844..3534 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size252
Cds size249
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10273.202.1prot_S-dermatodea_contig10273.202.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10273 1844..3532 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924148.9489858-CDS-S-dermatodea_contig10273:1843..18701622924148.9489858-CDS-S-dermatodea_contig10273:1843..1870Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10273 1844..1870 +
1694079051.0808601-CDS-S-dermatodea_contig10273:1843..18701694079051.0808601-CDS-S-dermatodea_contig10273:1843..1870Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10273 1844..1870 +
1622924148.9616568-CDS-S-dermatodea_contig10273:2384..24741622924148.9616568-CDS-S-dermatodea_contig10273:2384..2474Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10273 2385..2474 +
1694079051.0933497-CDS-S-dermatodea_contig10273:2384..24741694079051.0933497-CDS-S-dermatodea_contig10273:2384..2474Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10273 2385..2474 +
1622924148.9695494-CDS-S-dermatodea_contig10273:3400..35321622924148.9695494-CDS-S-dermatodea_contig10273:3400..3532Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10273 3401..3532 +
1694079051.103122-CDS-S-dermatodea_contig10273:3400..35321694079051.103122-CDS-S-dermatodea_contig10273:3400..3532Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10273 3401..3532 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10273.202.1

>prot_S-dermatodea_contig10273.202.1 ID=prot_S-dermatodea_contig10273.202.1|Name=mRNA_S-dermatodea_contig10273.202.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=83bp
WDVWGTERLGPTIDAVMRGARKEYERPPTTTSSLECAIESVVKICSKTEI
FIMELQKHATGPTKDGQGEGKLRVTVNDIVRKL
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mRNA from alignment at S-dermatodea_contig10273:1844..3534+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10273.202.1 ID=mRNA_S-dermatodea_contig10273.202.1|Name=mRNA_S-dermatodea_contig10273.202.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1691bp|location=Sequence derived from alignment at S-dermatodea_contig10273:1844..3534+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGGGATGTGTGGGGAACGGAGAGGCTGGTGAGGATCGTGTGTGTGTGTAT
GTTGGTGTATGTTGGTGTGTGTTGGTCTTTGTATTAGCGTGTTAATGTGT
TGGCATGTGGGGCGGAGGCCGCTGTGAGTTATGATGGGGAATGGAGAGCC
GCAAGCTGCATTGCCGTGCCTCTGGCCGTGCCTCTCAGTGAGGCACACCA
GTATTAACATTTATAGCAGCGAGCGGCTGTTGCAATCCATGGCAGCCTTT
CAGCACAGCAGTGCGATGCATTCCAGTACAAAACATGCGACCTTCGAGAC
AGGGGTAGAAAACATGCGTTTGCTCATGTTACCGGTAACCGGCGTTTCTC
TGGGTTTGCCATCTTTGGTCAGTGGCTTTCGGCAACGAACCCCAACGTCC
CAAAAATCCCGCTGTAACCAAACGTGGTACGTAGCACTTGTCACAGGAAC
GGCAAATCGTAGTTTCTGATGATGGATCATCATATTCGGCGCCTGCGTCA
CGTTCAAAGCGCCGCGCCCTTTTTGCTGTTTTTCGGCGCAGGGCCCCACG
ATAGACGCTGTGATGCGAGGGGCGCGGAAAGAGTACGAGCGGCCTCCTAC
GACAACAAGCAGCCTGGAGTGCGCCATCGAGGTGTGCCCGTTAACCATTG
TTGGACTTAGCCCGTTTCTCGCCGAGCATCTTCGCTACGGATAATGCGGT
GACAGCTACACGCACGAGTGCACCCCGTGTATGCGAGCTACTATGGGCTT
GTCAGAGTTCCACTTTTTTGTACCACCACGCACCCGCGGTGAAGAGCGAA
GAGCAGGCGTGGTTGGGTAGTAGCTGTTCGGAGCGGAAGTAATGTTGCGG
GCAAAATGGCCCCGACAACCGGACTCAGTTCCAAAAGAGATGAACTAAAA
GCAAACCTAATAAAGCTAGCTGGTTTTTGTGGCGGCTTCTTTCCCGCTTC
GTGTCCTGTATGCGTATGTTGTTGCCTGCTACAAGTATGATATTATATTT
TTATTTTATTGGCTTGTTCCGCGGACAGCTGGTGTACGGCTTTAGTCGAA
GACCCTTCTAGCTTGTCTGCAATACAGCCCGTTATAGCTTCGCTTGTCAA
GGTCGGGAACGAGCTCTTGACGAGCGCGTAAAATAAACGAGAAAGCCCAG
TAGCAGTAGAGATGGGACAGAGGAGACGACACCGTCGTCGTTAAGCGTTT
TCGCTGCCAGGGCGATCGGTAGCCCCCCTCGACTCACTGCCAGTTGTGGC
ATGGTAACGATGAATACCATTTTCAATGATCTCAGAGCAGCTGGTGCTGC
ATCAGAAAAATAACTCGCGGGCGAAAACTTTTGACATCGCTCATCACAAT
TTCAATGGTAGCCTACGTACACGATACCGCGGGAAACGCATCGCGGAACC
GAACGCGTTCGACTCGGGACACAATTCCGCGAGACAGCTGTAGCTCCGCG
GGGTGCAACACGTTTCTGAGAGCAAGATGCATATATTTATGGCAGCGTTT
CGTCACCTTGACCCCCTTCCTGCCTCACTGACGCCCATCTTGGCCGCCAA
CCCCCAGAGCGTGGTGAAGATCTGCTCGAAAACGGAAATATTTATTATGG
AGCTCCAAAAGCACGCGACAGGACCGACGAAGGATGGGCAGGGGGAGGGT
AAGTTGCGGGTCACCGTGAACGACATCGTGAGGAAGCTGCA
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Coding sequence (CDS) from alignment at S-dermatodea_contig10273:1844..3534+

>mRNA_S-dermatodea_contig10273.202.1 ID=mRNA_S-dermatodea_contig10273.202.1|Name=mRNA_S-dermatodea_contig10273.202.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at S-dermatodea_contig10273:1844..3534+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGGGATGTGTGGGGAACGGAGAGGCTGTGGGATGTGTGGGGAACGGAGAG
GCTGGGCCCCACGATAGACGCTGTGATGCGAGGGGCGCGGAAAGAGTACG
AGCGGCCTCCTACGACAACAAGCAGCCTGGAGTGCGCCATCGAGGGCCCC
ACGATAGACGCTGTGATGCGAGGGGCGCGGAAAGAGTACGAGCGGCCTCC
TACGACAACAAGCAGCCTGGAGTGCGCCATCGAGAGCGTGGTGAAGATCT
GCTCGAAAACGGAAATATTTATTATGGAGCTCCAAAAGCACGCGACAGGA
CCGACGAAGGATGGGCAGGGGGAGGGTAAGTTGCGGGTCACCGTGAACGA
CATCGTGAGGAAGCTGAGCGTGGTGAAGATCTGCTCGAAAACGGAAATAT
TTATTATGGAGCTCCAAAAGCACGCGACAGGACCGACGAAGGATGGGCAG
GGGGAGGGTAAGTTGCGGGTCACCGTGAACGACATCGTGAGGAAGCTG
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