mRNA_S-dermatodea_contig10272.200.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10272.200.1
Unique NamemRNA_S-dermatodea_contig10272.200.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10272.200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10272contigS-dermatodea_contig10272:3939..7143 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1513
Cds size1203
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10272.200.1prot_S-dermatodea_contig10272.200.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10272 4240..7134 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924148.8319383-UTR-S-dermatodea_contig10272:3938..42391622924148.8319383-UTR-S-dermatodea_contig10272:3938..4239Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10272 3939..4239 -
1694079050.998393-UTR-S-dermatodea_contig10272:3938..42391694079050.998393-UTR-S-dermatodea_contig10272:3938..4239Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10272 3939..4239 -
1622924148.8890092-UTR-S-dermatodea_contig10272:7134..71431622924148.8890092-UTR-S-dermatodea_contig10272:7134..7143Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10272 7135..7143 -
1694079051.0556011-UTR-S-dermatodea_contig10272:7134..71431694079051.0556011-UTR-S-dermatodea_contig10272:7134..7143Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10272 7135..7143 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924148.8503103-CDS-S-dermatodea_contig10272:4239..42761622924148.8503103-CDS-S-dermatodea_contig10272:4239..4276Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10272 4240..4276 -
1694079051.006823-CDS-S-dermatodea_contig10272:4239..42761694079051.006823-CDS-S-dermatodea_contig10272:4239..4276Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10272 4240..4276 -
1622924148.8617299-CDS-S-dermatodea_contig10272:4672..55371622924148.8617299-CDS-S-dermatodea_contig10272:4672..5537Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10272 4673..5537 -
1694079051.0154548-CDS-S-dermatodea_contig10272:4672..55371694079051.0154548-CDS-S-dermatodea_contig10272:4672..5537Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10272 4673..5537 -
1622924148.870473-CDS-S-dermatodea_contig10272:6202..63101622924148.870473-CDS-S-dermatodea_contig10272:6202..6310Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10272 6203..6310 -
1694079051.0239918-CDS-S-dermatodea_contig10272:6202..63101694079051.0239918-CDS-S-dermatodea_contig10272:6202..6310Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10272 6203..6310 -
1622924148.8803594-CDS-S-dermatodea_contig10272:6941..71341622924148.8803594-CDS-S-dermatodea_contig10272:6941..7134Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10272 6942..7134 -
1694079051.0389798-CDS-S-dermatodea_contig10272:6941..71341694079051.0389798-CDS-S-dermatodea_contig10272:6941..7134Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10272 6942..7134 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10272.200.1

>prot_S-dermatodea_contig10272.200.1 ID=prot_S-dermatodea_contig10272.200.1|Name=mRNA_S-dermatodea_contig10272.200.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=401bp
MASDAWSPSTPAESDLPTEGMPSLGWIESAWDTSNELVEQVVMPSPSSLS
EGDESDCVRVGSPEAGRRLLDRVPADLAIEDAPGGASGADDAREETTTTS
AGRSLLLDAFTVLLTHNFAKFGRRRYASMRSLSLVSLELCAAYRSVVIVR
VRVSSSSVWHKFKTADRSSRKGRAASRIPMPPRVLRMSWEISLRHLPKRE
SPAVKAIKGLGRLVRGRCFHAPKDRTIWPRSLQELTFGERYYGEDCVMEK
VVWPPRLKQLSFGYWFNQDIEGVVFPASLEYMYMGLYFDRPIEGVVWPPS
LRQLEFGHGFNRPIEKVVWPDSLQELTFGFEFNQSIDRVAWPASLERLAF
GRRFDQNIDNISWPAALKDLQLWANPVKISTFRERVNTRAMITAAAGEEE
*
back to top

mRNA from alignment at S-dermatodea_contig10272:3939..7143-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10272.200.1 ID=mRNA_S-dermatodea_contig10272.200.1|Name=mRNA_S-dermatodea_contig10272.200.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3205bp|location=Sequence derived from alignment at S-dermatodea_contig10272:3939..7143- (Saccorhiza dermatodea SderLu1190fm monoicous)
ACACGCGAGATGGCTTCCGATGCCTGGAGTCCTTCAACCCCCGCCGAGTC
CGATCTGCCCACGGAGGGGATGCCGAGCTTGGGGTGGATTGAGAGCGCGT
GGGATACCTCCAACGAGCTTGTTGAGCAGGTCGTCATGCCCAGCCCGAGC
TCGCTCTCTGAGGGAGATGAAAGCGATTGCGTGAGGGTCGGATCTCCTGA
AGGTGGGTGGTATGCGCAAGTAAGCGTGGAGAAGGCTGTGACTCAGGTGA
CGACTTGATGGTGTCCGCGCTCTGAGGCCCTCGCGTTGGGATGTTTGTGT
GCGTGGCGCCGATCAACCGTAGACGGTTTTCCGAAGAATCGGGAATTGTA
CAAAAGTATACACAAGAGGCCCTCCCCCGGCTGGGGCCACCTGTTGTACA
GCTGACTGCTGTTATACTGTTATACGACCGAAAGATTCGTATATACACGA
AGGACGGCCCCTTATCTTGAGGCTTATCATATCATAGAGCCCTGGGCGTT
TCGAAGCGAAAGCACGACAGACGGCAGCAGCAGTACAACGTGTATCCTCC
CGCAGTGAACCCGGATGCTGCTCCAAGTACGCGCACTCAGGCCGACAGAC
AGGTAGATCAAAGAGCGCCGCGCATGCCTTCGCTACATCGTATTAAAGGT
ACAAAAATAAGAAAGTGCGCGCGCCGCCGCCTGTCGTATGTACGTGTACT
CTGTATCATACAACATCGGTGGGCTATGTCCGCAACAAAAATTACACCGC
GTATCGTCGCGTTCTACAGTACAGGGACTGCTGTACGCGTTCCGCCATCT
GATTTGCCTCCTTCTCGCCCCCTTGTTCTGCAGCCGGACGACGCTTGCTC
GATAGGGTTCCAGCGGACCTTGCTATCGAAGACGCTCCGGGGGGCGCATC
TGGTGCGGACGACGCACGAGAGGAGACCACCACTACCTCAGGTTCGCGCA
CGTTGGGAGGCGGCGTTACTATTATACTGCACAGGGAATAGCGATTACGG
CCACGTCTGATGGTGTCCACCCTGTCATCCCCAAACTGCAGCAACATATC
TCCCTGCTGCGCTTTTACTCGTATACACCCATGGTAGCGCTGCTTCCATC
AACGTACTCTTTATTAGTTAATAGCTCGGGGGAGGGGGGCTACTCATGTT
TGCATGCCTTGGCTGTTAGAGGGGGTGGAATTGGCCTTCACCTGGCCAAG
TTCCATGTGATATTCCCCGGCTGCGTCAGCCGCTGCTCTGTTTACGTACA
CGAGTCGGCAGTTCCGGAGAGGGCGCTCGCTTGAGATTTATTTTCGCTGC
TGATCAACTTATCCTGCACGTGTGTTCCATACTTTTGTTGTGTATGCATA
CTGCTGTTGTACCATACATATGATGAACTTACTTCAATGTTCATACGCGC
GTAGCTGGCAACTCGTTGGGCGCGGTGCTTGCTTCCCCCAGGGTCTCCAA
TGGTTGCAGCGATACTTACTTAAACTCGGTTTTCCAAGCGACTGTACAGC
AGTACTGCTGTGTAAACACCCCGCTATTGTTCACCCAGCCCGTTCAAGCC
CACTCGTATTCGCCCGACGTGACTGTCCGTGGCCCTTCCCTTCCACGTCT
CTGCAGCCGGGCGAAGCCTCCTCCTGGACGCCTTCACCGTGCTGTTAACG
CACAACTTCGCGAAGTTCGGAAGGCGCCGATACGCGTCAATGCGAAGCCT
TTCCCTCGTTTCGTTGGAGCTATGCGCGGCGTACCGAAGCGTGGTGATCG
TTCGAGTACGTGTATCCTCGAGCTCCGTTTGGCACAAATTCAAGACAGCG
GACAGAAGCAGCCGCAAGGGACGCGCTGCCTCACGCATCCCAATGCCTCC
GCGAGTACTCCGTATGAGCTGGGAAATTTCTCTGAGACATCTTCCGAAGA
GGGAGTCACCTGCCGTAAAGGCGATTAAGGGGTTGGGACGGCTTGTTCGA
GGGCGGTGCTTCCACGCACCGAAAGATAGGACGATTTGGCCGCGATCGCT
GCAAGAGCTAACCTTCGGCGAGAGATACTATGGCGAAGATTGCGTGATGG
AAAAGGTCGTGTGGCCCCCGCGTTTGAAGCAGCTGTCGTTCGGGTACTGG
TTCAACCAGGACATCGAGGGCGTTGTTTTTCCTGCTTCCTTGGAGTACAT
GTACATGGGCCTATACTTCGACCGGCCGATCGAGGGAGTAGTGTGGCCGC
CGTCGCTGCGGCAGCTGGAGTTCGGGCATGGATTCAACAGGCCGATCGAG
AAGGTTGTGTGGCCTGACTCACTGCAGGAGCTGACGTTCGGGTTTGAGTT
CAACCAGTCGATCGACCGAGTCGCGTGGCCGGCCTCGCTGGAGCGGTTGG
CCTTTGGGCGAAGATTTGACCAAAATATCGACAATATTTCGTGGCCGGCG
GCACTGAAAGACTTGCAGCTCTGGGCAAATCCAGTCAAGATCTCCACTTT
TCGAGAGAGAGTTAATACAAGGTGCGCTGTCGTATTTCGGACGCAATCGA
TTTTTGGTGCTATTGTCGGGTCGCCCATGTTGAAAATCGCGCCTACGTGC
ATGACAAATCTACTCAGGAGTCGCGCTATGCTATCTCTAGTAGGTTGTAT
CTCTAATAGGGCGTAAAGCGTAAGTGATCACACCACGGCCGTCTGATGAT
GCTCAGCCCGAAAGAAACCCGATCGTGAGCACCTGAGCCTTCGTGAGAAT
TGGAATCTCTGCTCAATCTCGTTAGCAACTTGGGTTTGTGCGAGATTTGC
GAAGGGCAGGGTTTGCAATGTTTAGAGGCATTTTCTCATGAAAATACAAA
CGCGGCCCTGATATCAATCTGCTAACAAGACCGGTACGACATATGCATAA
TCCATTAATCGGCACAGGGCTATGATAACTGCTGCTGCTGGTGAGGAAGA
ATGAGGGTTCGGACAAGTGTTCGGGGCAGGCGATAAGCTTTCTCCGTCGG
CGGTGGTGATTCAGCCGGGGGGGAGGGGCTTGGATCGCGGCGCCTCGGCC
TTGTTTGGCTGCAACCGCAGTCCAAATTTTGCTGGAATCAGGCTTCCCCC
TCTGGTAACACCTGGTTTTGTTGTTTTTCGGGCCTGGAGCAGGGAAGTCA
AACATAACAGGTGAAAGCGGCATCGATAAAATGGTCGCCGTCACACTTGG
ATTCCTGTAAATACGAGCAGACGCGAAGTGGTCCACAGCAGCATGCCGAT
GCCGG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig10272:3939..7143-

>mRNA_S-dermatodea_contig10272.200.1 ID=mRNA_S-dermatodea_contig10272.200.1|Name=mRNA_S-dermatodea_contig10272.200.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2406bp|location=Sequence derived from alignment at S-dermatodea_contig10272:3939..7143- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCTTCCGATGCCTGGAGTCCTTCAACCCCCGCCGAGTCCGATCTGCC
CACGGAGGGGATGCCGAGCTTGGGGTGGATTGAGAGCGCGTGGGATACCT
CCAACGAGCTTGTTGAGCAGGTCGTCATGCCCAGCCCGAGCTCGCTCTCT
GAGGGAGATGAAAGCGATTGCGTGAGGGTCGGATCTCCTGAAGATGGCTT
CCGATGCCTGGAGTCCTTCAACCCCCGCCGAGTCCGATCTGCCCACGGAG
GGGATGCCGAGCTTGGGGTGGATTGAGAGCGCGTGGGATACCTCCAACGA
GCTTGTTGAGCAGGTCGTCATGCCCAGCCCGAGCTCGCTCTCTGAGGGAG
ATGAAAGCGATTGCGTGAGGGTCGGATCTCCTGAAGCCGGACGACGCTTG
CTCGATAGGGTTCCAGCGGACCTTGCTATCGAAGACGCTCCGGGGGGCGC
ATCTGGTGCGGACGACGCACGAGAGGAGACCACCACTACCTCAGCCGGAC
GACGCTTGCTCGATAGGGTTCCAGCGGACCTTGCTATCGAAGACGCTCCG
GGGGGCGCATCTGGTGCGGACGACGCACGAGAGGAGACCACCACTACCTC
AGCCGGGCGAAGCCTCCTCCTGGACGCCTTCACCGTGCTGTTAACGCACA
ACTTCGCGAAGTTCGGAAGGCGCCGATACGCGTCAATGCGAAGCCTTTCC
CTCGTTTCGTTGGAGCTATGCGCGGCGTACCGAAGCGTGGTGATCGTTCG
AGTACGTGTATCCTCGAGCTCCGTTTGGCACAAATTCAAGACAGCGGACA
GAAGCAGCCGCAAGGGACGCGCTGCCTCACGCATCCCAATGCCTCCGCGA
GTACTCCGTATGAGCTGGGAAATTTCTCTGAGACATCTTCCGAAGAGGGA
GTCACCTGCCGTAAAGGCGATTAAGGGGTTGGGACGGCTTGTTCGAGGGC
GGTGCTTCCACGCACCGAAAGATAGGACGATTTGGCCGCGATCGCTGCAA
GAGCTAACCTTCGGCGAGAGATACTATGGCGAAGATTGCGTGATGGAAAA
GGTCGTGTGGCCCCCGCGTTTGAAGCAGCTGTCGTTCGGGTACTGGTTCA
ACCAGGACATCGAGGGCGTTGTTTTTCCTGCTTCCTTGGAGTACATGTAC
ATGGGCCTATACTTCGACCGGCCGATCGAGGGAGTAGTGTGGCCGCCGTC
GCTGCGGCAGCTGGAGTTCGGGCATGGATTCAACAGGCCGATCGAGAAGG
TTGTGTGGCCTGACTCACTGCAGGAGCTGACGTTCGGGTTTGAGTTCAAC
CAGTCGATCGACCGAGTCGCGTGGCCGGCCTCGCTGGAGCGGTTGGCCTT
TGGGCGAAGATTTGACCAAAATATCGACAATATTTCGTGGCCGGCGGCAC
TGAAAGACTTGCAGCTCTGGGCAAATCCAGTCAAGATCTCCACTTTTCGA
GAGAGAGTTAATACAAGCCGGGCGAAGCCTCCTCCTGGACGCCTTCACCG
TGCTGTTAACGCACAACTTCGCGAAGTTCGGAAGGCGCCGATACGCGTCA
ATGCGAAGCCTTTCCCTCGTTTCGTTGGAGCTATGCGCGGCGTACCGAAG
CGTGGTGATCGTTCGAGTACGTGTATCCTCGAGCTCCGTTTGGCACAAAT
TCAAGACAGCGGACAGAAGCAGCCGCAAGGGACGCGCTGCCTCACGCATC
CCAATGCCTCCGCGAGTACTCCGTATGAGCTGGGAAATTTCTCTGAGACA
TCTTCCGAAGAGGGAGTCACCTGCCGTAAAGGCGATTAAGGGGTTGGGAC
GGCTTGTTCGAGGGCGGTGCTTCCACGCACCGAAAGATAGGACGATTTGG
CCGCGATCGCTGCAAGAGCTAACCTTCGGCGAGAGATACTATGGCGAAGA
TTGCGTGATGGAAAAGGTCGTGTGGCCCCCGCGTTTGAAGCAGCTGTCGT
TCGGGTACTGGTTCAACCAGGACATCGAGGGCGTTGTTTTTCCTGCTTCC
TTGGAGTACATGTACATGGGCCTATACTTCGACCGGCCGATCGAGGGAGT
AGTGTGGCCGCCGTCGCTGCGGCAGCTGGAGTTCGGGCATGGATTCAACA
GGCCGATCGAGAAGGTTGTGTGGCCTGACTCACTGCAGGAGCTGACGTTC
GGGTTTGAGTTCAACCAGTCGATCGACCGAGTCGCGTGGCCGGCCTCGCT
GGAGCGGTTGGCCTTTGGGCGAAGATTTGACCAAAATATCGACAATATTT
CGTGGCCGGCGGCACTGAAAGACTTGCAGCTCTGGGCAAATCCAGTCAAG
ATCTCCACTTTTCGAGAGAGAGTTAATACAAGGGCTATGATAACTGCTGC
TGCTGGTGAGGAAGAATGAGGCTATGATAACTGCTGCTGCTGGTGAGGAA
GAATGA
back to top