mRNA_S-dermatodea_contig10269.196.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10269.196.1
Unique NamemRNA_S-dermatodea_contig10269.196.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig10269.196.1 vs. uniprot
Match: D8LK57_ECTSI (PWI domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK57_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 3.290e-36
Identity = 66/78 (84.62%), Postives = 71/78 (91.03%), Query Frame = 1
Query:   31 RALYTEQDSRWGDAEKKLLRRTKFSKVLEQKVNMKKVNMEVMQRWIAQRITSLLGFEDDIVVGTCVNYLSEKVRITAK 264
            R    EQDSRWGDAEKKLLRRTKFSKVLEQKVNMKKVNM+VMQRWIAQRITSLLGFEDDIVVGTC+NYLSE+ ++  K
Sbjct:    7 RGTTAEQDSRWGDAEKKLLRRTKFSKVLEQKVNMKKVNMDVMQRWIAQRITSLLGFEDDIVVGTCINYLSEEGKLDPK 84          
BLAST of mRNA_S-dermatodea_contig10269.196.1 vs. uniprot
Match: A0A6H5KM37_9PHAE (PWI domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM37_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 5.960e-36
Identity = 67/78 (85.90%), Postives = 71/78 (91.03%), Query Frame = 1
Query:   31 RALYTEQDSRWGDAEKKLLRRTKFSKVLEQKVNMKKVNMEVMQRWIAQRITSLLGFEDDIVVGTCVNYLSEKVRITAK 264
            R    EQDSRWGDAEKKLLRRTKFSKVLEQKVNMKKVNM+VMQRWIAQRITSLLGFEDDIVVGTCVNYLSE+ ++  K
Sbjct:    7 RGTTAEQDSRWGDAEKKLLRRTKFSKVLEQKVNMKKVNMDVMQRWIAQRITSLLGFEDDIVVGTCVNYLSEEGKLDPK 84          
BLAST of mRNA_S-dermatodea_contig10269.196.1 vs. uniprot
Match: A0A3B5LXS2_9TELE (Serine/arginine repetitive matrix 1 n=2 Tax=Poeciliinae TaxID=586240 RepID=A0A3B5LXS2_9TELE)

HSP 1 Score: 80.9 bits (198), Expect = 5.330e-18
Identity = 38/79 (48.10%), Postives = 57/79 (72.15%), Query Frame = 1
Query:   31 RALYTEQDSRWGDAEKKLLRRTKFSKVLEQKVNMKKVNMEVMQRWIAQRITSLLGFEDDIVVGTCVNYLSEKVRITAKY 267
            R    EQD+R+ + +KKLL++ KF++ L++KV+M KVN+EV++ WI QR+T +LGFEDD+V+    N L EKV   + Y
Sbjct:    7 RGTSAEQDNRFSNKQKKLLKQLKFAECLDKKVDMTKVNLEVIKPWITQRVTEILGFEDDVVIEFIFNQLEEKVNYISSY 85          
BLAST of mRNA_S-dermatodea_contig10269.196.1 vs. uniprot
Match: A0A3Q3W3H8_MOLML (PWI domain-containing protein n=1 Tax=Mola mola TaxID=94237 RepID=A0A3Q3W3H8_MOLML)

HSP 1 Score: 80.1 bits (196), Expect = 1.070e-17
Identity = 39/78 (50.00%), Postives = 57/78 (73.08%), Query Frame = 1
Query:   31 RALYTEQDSRWGDAEKKLLRRTKFSKVLEQKVNMKKVNMEVMQRWIAQRITSLLGFEDDIVVGTCVNYLSEKVRITAK 264
            R    EQD+R+ + +KKLL++ KF++ L++KV+M KVN+EV++ WI QR+T +LGFEDD+V+    N L EKV I  K
Sbjct:    7 RGTSAEQDNRFSNKQKKLLKQLKFAECLDKKVDMTKVNLEVIKPWITQRVTEILGFEDDVVIEFIFNQLEEKVIILMK 84          
BLAST of mRNA_S-dermatodea_contig10269.196.1 vs. uniprot
Match: A0A8C6X934_NAJNA (PWI domain-containing protein n=1 Tax=Naja naja TaxID=35670 RepID=A0A8C6X934_NAJNA)

HSP 1 Score: 79.7 bits (195), Expect = 1.400e-17
Identity = 38/78 (48.72%), Postives = 57/78 (73.08%), Query Frame = 1
Query:   22 PLGRALYTEQDSRWGDAEKKLLRRTKFSKVLEQKVNMKKVNMEVMQRWIAQRITSLLGFEDDIVVGTCVNYLSEKVRI 255
            P G+    EQD+R+ + +KKLL++ KF++ LE+KV+M KVN+EV++ WI +R+T +LGFEDD+V+    N L  KV I
Sbjct:    8 PAGKGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLEVKVII 85          
BLAST of mRNA_S-dermatodea_contig10269.196.1 vs. uniprot
Match: A0A444UU49_ACIRT (Serine/arginine repetitive matrix protein 1 n=1 Tax=Acipenser ruthenus TaxID=7906 RepID=A0A444UU49_ACIRT)

HSP 1 Score: 79.3 bits (194), Expect = 1.990e-17
Identity = 38/73 (52.05%), Postives = 55/73 (75.34%), Query Frame = 1
Query:   31 RALYTEQDSRWGDAEKKLLRRTKFSKVLEQKVNMKKVNMEVMQRWIAQRITSLLGFEDDIVVGTCVNYLSEKV 249
            R    EQD+R+ + +KKLL++ KF++ LE+KV+M KVN+EV++ WI QR+T +LGFEDD+V+    N L EKV
Sbjct:    7 RGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMTKVNLEVIKPWITQRVTEILGFEDDVVIEFIFNQLEEKV 79          
BLAST of mRNA_S-dermatodea_contig10269.196.1 vs. uniprot
Match: A0A444URY3_ACIRT (Serine/arginine repetitive matrix protein 1 (Fragment) n=1 Tax=Acipenser ruthenus TaxID=7906 RepID=A0A444URY3_ACIRT)

HSP 1 Score: 79.0 bits (193), Expect = 2.750e-17
Identity = 37/68 (54.41%), Postives = 54/68 (79.41%), Query Frame = 1
Query:   46 EQDSRWGDAEKKLLRRTKFSKVLEQKVNMKKVNMEVMQRWIAQRITSLLGFEDDIVVGTCVNYLSEKV 249
            EQD+R+ + +KKLL++ KF++ LE+KV+M KVN+EV++ WI QR+T +LGFEDD+V+    N L EKV
Sbjct:    5 EQDNRFSNKQKKLLKQLKFAECLEKKVDMTKVNLEVIKPWITQRVTEILGFEDDVVIEFIFNQLEEKV 72          
BLAST of mRNA_S-dermatodea_contig10269.196.1 vs. uniprot
Match: C1BFA5_ONCMY (Serine/arginine repetitive matrix protein 1 n=1 Tax=Oncorhynchus mykiss TaxID=8022 RepID=C1BFA5_ONCMY)

HSP 1 Score: 79.0 bits (193), Expect = 3.490e-17
Identity = 38/73 (52.05%), Postives = 55/73 (75.34%), Query Frame = 1
Query:   31 RALYTEQDSRWGDAEKKLLRRTKFSKVLEQKVNMKKVNMEVMQRWIAQRITSLLGFEDDIVVGTCVNYLSEKV 249
            R    EQD+R+ + +KKLL++ KF++ LE+KV+M KVN+EV++ WI QR+T +LGFEDD+V+    N L EKV
Sbjct:    7 RGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMTKVNLEVIKPWITQRVTEILGFEDDLVIEFIFNQLEEKV 79          
BLAST of mRNA_S-dermatodea_contig10269.196.1 vs. uniprot
Match: A0A8C1AHX8_CYPCA (PWI domain-containing protein n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1AHX8_CYPCA)

HSP 1 Score: 78.6 bits (192), Expect = 3.900e-17
Identity = 38/73 (52.05%), Postives = 54/73 (73.97%), Query Frame = 1
Query:   31 RALYTEQDSRWGDAEKKLLRRTKFSKVLEQKVNMKKVNMEVMQRWIAQRITSLLGFEDDIVVGTCVNYLSEKV 249
            R    EQD+R+ +  KKLL++ KF++ LE+KV+M KVN+EV++ WI QR+T +LGFEDD+V+    N L EKV
Sbjct:    7 RGTSAEQDNRFSNKHKKLLKQLKFAECLEKKVDMTKVNLEVVKPWITQRVTEILGFEDDVVIEFVFNQLEEKV 79          
BLAST of mRNA_S-dermatodea_contig10269.196.1 vs. uniprot
Match: A0A8C4SX00_ERPCA (Serine and arginine repetitive matrix 1 n=1 Tax=Erpetoichthys calabaricus TaxID=27687 RepID=A0A8C4SX00_ERPCA)

HSP 1 Score: 79.3 bits (194), Expect = 4.240e-17
Identity = 37/74 (50.00%), Postives = 55/74 (74.32%), Query Frame = 1
Query:   31 RALYTEQDSRWGDAEKKLLRRTKFSKVLEQKVNMKKVNMEVMQRWIAQRITSLLGFEDDIVVGTCVNYLSEKVR 252
            R    EQD+R+ + +KKLL++ KF++ LE+KV+M KVN+EV++ WI QR+T +LGFEDD+V+    N L EK+ 
Sbjct:    7 RGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMTKVNLEVIKPWITQRVTEILGFEDDVVIEFIFNQLEEKIN 80          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10269.196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LK57_ECTSI3.290e-3684.62PWI domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KM37_9PHAE5.960e-3685.90PWI domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A3B5LXS2_9TELE5.330e-1848.10Serine/arginine repetitive matrix 1 n=2 Tax=Poecil... [more]
A0A3Q3W3H8_MOLML1.070e-1750.00PWI domain-containing protein n=1 Tax=Mola mola Ta... [more]
A0A8C6X934_NAJNA1.400e-1748.72PWI domain-containing protein n=1 Tax=Naja naja Ta... [more]
A0A444UU49_ACIRT1.990e-1752.05Serine/arginine repetitive matrix protein 1 n=1 Ta... [more]
A0A444URY3_ACIRT2.750e-1754.41Serine/arginine repetitive matrix protein 1 (Fragm... [more]
C1BFA5_ONCMY3.490e-1752.05Serine/arginine repetitive matrix protein 1 n=1 Ta... [more]
A0A8C1AHX8_CYPCA3.900e-1752.05PWI domain-containing protein n=1 Tax=Cyprinus car... [more]
A0A8C4SX00_ERPCA4.240e-1750.00Serine and arginine repetitive matrix 1 n=1 Tax=Er... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10269contigS-dermatodea_contig10269:5194..5691 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.7
Seed ortholog evalue1.7e-28
Seed eggNOG ortholog2880.D8LK57
Preferred nameSRRM1
KEGG koko:K13171
KEGG Pathwayko03013,ko03015,map03013,map03015
KEGG ModuleM00430
GOsGO:0000003,GO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0001654,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0007275,GO:0007423,GO:0007530,GO:0007548,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0010468,GO:0010941,GO:0010942,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016363,GO:0016604,GO:0016607,GO:0018993,GO:0019219,GO:0019222,GO:0022414,GO:0031123,GO:0031124,GO:0031323,GO:0031503,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0034399,GO:0034613,GO:0034641,GO:0035145,GO:0042752,GO:0042886,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0045292,GO:0046483,GO:0046907,GO:0048024,GO:0048513,GO:0048518,GO:0048522,GO:0048608,GO:0048731,GO:0048749,GO:0048806,GO:0048856,GO:0050657,GO:0050658,GO:0050684,GO:0050789,GO:0050794,GO:0051028,GO:0051168,GO:0051169,GO:0051171,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051641,GO:0051649,GO:0060255,GO:0061458,GO:0065007,GO:0070013,GO:0070727,GO:0071013,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0080090,GO:0090304,GO:1901360,GO:1902494,GO:1903311,GO:1990904
EggNOG free text desc.mRNA processing
EggNOG OGsKOG2146@1,KOG2146@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPWI domain
Ec32 orthologEc-06_008250.1
Exons2
Model size267
Cds size267
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924148.6395175-CDS-S-dermatodea_contig10269:5193..53161622924148.6395175-CDS-S-dermatodea_contig10269:5193..5316Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10269 5194..5316 +
1694079050.903751-CDS-S-dermatodea_contig10269:5193..53161694079050.903751-CDS-S-dermatodea_contig10269:5193..5316Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10269 5194..5316 +
1622924148.6583898-CDS-S-dermatodea_contig10269:5547..56911622924148.6583898-CDS-S-dermatodea_contig10269:5547..5691Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10269 5548..5691 +
1694079050.914843-CDS-S-dermatodea_contig10269:5547..56911694079050.914843-CDS-S-dermatodea_contig10269:5547..5691Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10269 5548..5691 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10269.196.1prot_S-dermatodea_contig10269.196.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10269 5194..5691 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10269.196.1

>prot_S-dermatodea_contig10269.196.1 ID=prot_S-dermatodea_contig10269.196.1|Name=mRNA_S-dermatodea_contig10269.196.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=89bp
MIKTKNCPLGRALYTEQDSRWGDAEKKLLRRTKFSKVLEQKVNMKKVNME
VMQRWIAQRITSLLGFEDDIVVGTCVNYLSEKVRITAKY
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mRNA from alignment at S-dermatodea_contig10269:5194..5691+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10269.196.1 ID=mRNA_S-dermatodea_contig10269.196.1|Name=mRNA_S-dermatodea_contig10269.196.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=498bp|location=Sequence derived from alignment at S-dermatodea_contig10269:5194..5691+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATTAAAACGAAAAACTGCCCCCTCGGTCGTGCGTTATACACAGAACA AGACAGCCGATGGGGTGACGCTGAGAAGAAGCTACTCCGTCGGACGAAGT TTAGCAAGGTTCTGGAGCAGAAGGTACGCTGCGATCCGGACCGCCCGTTG TTGCAAGAGGCAACAATGCTGCTTGTATTCCCATCCGACTTCGCAGTCGA CGGTTTCGTTTTGTTTTGGGGTGTTGGGATACAAGACGGCAGCGTTACAG CAGGAATTAGAGACTCTCTCTGCTTCATGAGTCAGATCACGCCTGTCTCG GTGCCTGTCCGCGCGCGAAGTCAACGCACAGCGTGATGGCACGATTGTTT GCAGGTGAACATGAAGAAGGTGAACATGGAGGTTATGCAGCGATGGATCG CACAGCGGATAACATCGCTGCTTGGCTTCGAAGATGACATCGTGGTCGGC ACGTGCGTCAATTACCTCTCAGAGAAGGTGCGTATAACTGCGAAGTAT
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Coding sequence (CDS) from alignment at S-dermatodea_contig10269:5194..5691+

>mRNA_S-dermatodea_contig10269.196.1 ID=mRNA_S-dermatodea_contig10269.196.1|Name=mRNA_S-dermatodea_contig10269.196.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at S-dermatodea_contig10269:5194..5691+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATTAAAACGAAAAACTGCCCCCTCGGTCGTGCGTTATACACAGAACA
AGACAGCCGATGGGGTGACGCTGAGAAGAAGCTACTCCGTCGGACGAAGT
TTAGCAAGGTTCTGGAGCAGAAGATGATTAAAACGAAAAACTGCCCCCTC
GGTCGTGCGTTATACACAGAACAAGACAGCCGATGGGGTGACGCTGAGAA
GAAGCTACTCCGTCGGACGAAGTTTAGCAAGGTTCTGGAGCAGAAGGTGA
ACATGAAGAAGGTGAACATGGAGGTTATGCAGCGATGGATCGCACAGCGG
ATAACATCGCTGCTTGGCTTCGAAGATGACATCGTGGTCGGCACGTGCGT
CAATTACCTCTCAGAGAAGGTGCGTATAACTGCGAAGTATGTGAACATGA
AGAAGGTGAACATGGAGGTTATGCAGCGATGGATCGCACAGCGGATAACA
TCGCTGCTTGGCTTCGAAGATGACATCGTGGTCGGCACGTGCGTCAATTA
CCTCTCAGAGAAGGTGCGTATAACTGCGAAGTAT
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