mRNA_S-dermatodea_contig10263.195.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10263.195.1
Unique NamemRNA_S-dermatodea_contig10263.195.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10263.195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10263contigS-dermatodea_contig10263:1338..3606 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size863
Cds size855
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10263.195.1prot_S-dermatodea_contig10263.195.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10263 1346..3606 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924148.5632045-UTR-S-dermatodea_contig10263:1337..13451622924148.5632045-UTR-S-dermatodea_contig10263:1337..1345Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10263 1338..1345 +
1694079050.858266-UTR-S-dermatodea_contig10263:1337..13451694079050.858266-UTR-S-dermatodea_contig10263:1337..1345Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10263 1338..1345 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924148.5738873-CDS-S-dermatodea_contig10263:1345..14581622924148.5738873-CDS-S-dermatodea_contig10263:1345..1458Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10263 1346..1458 +
1694079050.8679013-CDS-S-dermatodea_contig10263:1345..14581694079050.8679013-CDS-S-dermatodea_contig10263:1345..1458Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10263 1346..1458 +
1622924148.583202-CDS-S-dermatodea_contig10263:2864..36061622924148.583202-CDS-S-dermatodea_contig10263:2864..3606Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10263 2865..3606 +
1694079050.8776617-CDS-S-dermatodea_contig10263:2864..36061694079050.8776617-CDS-S-dermatodea_contig10263:2864..3606Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10263 2865..3606 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10263.195.1

>prot_S-dermatodea_contig10263.195.1 ID=prot_S-dermatodea_contig10263.195.1|Name=mRNA_S-dermatodea_contig10263.195.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=285bp
MKAYCRACWQVADAEAALREAKGEVVTTNYNFKYPDNTVTLRHFVFKEGL
FNTFFTHCTSKDGSTGRATREAGGGGQNCPACDAEDITELTCSRAWVFRT
KYGTNTSESINGSISATVSKRSDLFVSQFGRAHLAVLKRNFPGGYAALVQ
HLRERLDLEPLSEAAVREVATREKVNRHVPPAGEEIRTREQSAERTNSKV
QTRGEESTRTTAALAGHKVACNEQPCPTVGQEQRTRMEAEKAEIKAASIA
AKKAATAARKATAAAAKAAAETSVRKGKGGDRGSA
back to top

mRNA from alignment at S-dermatodea_contig10263:1338..3606+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10263.195.1 ID=mRNA_S-dermatodea_contig10263.195.1|Name=mRNA_S-dermatodea_contig10263.195.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2269bp|location=Sequence derived from alignment at S-dermatodea_contig10263:1338..3606+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGCAGCCATGAAGGCGTACTGCAGGGCGTGCTGGCAGGTTGCAGATGCT
GAAGCCGCACTTCGCGAGGCGAAGGGTGAGGTCGTCACCACCAACTACAA
CTTCAAGTATCCGGATAACACGTAAGCCTCTTTCCCTTGTCTACCTGTAA
GGCCCGTTTCTGTTTTACGTGTTTTTCCGTCGCTAAACGTAATGAGAGCC
TGTGCACCACTGCTGTTCCGACCTCCACCGTTTAGGGGCCGACTGTATAC
AACATATATGACACGTCTCGTGGCCATTCGGGTCGAAAATCAAGGCATGA
TTTACAACCGCGAAACACGAGGTTAGTACAGTAGTAAGGGCCGGTTCAAA
CGGGAAAAACGATTTTCAATTAATTGAAATTTCAAGTAAAACAAATAACG
CTTTGATTAAAACGCTCAAATGGCCGCAGCAGCTTCGACCAGCTTGCTGA
AAGTTGCTAAGCAGGCGGCGCCGCTGCCATTCGAGGCCCCACACCGCGCC
TCACAGCCTCTCACTAACCAGCAGGAGTATACTCTGGGGTCTAGAGGTAG
TCTCGGGGCTGCGCCGGCCCTCGGACACGCTTGCTTTCGGTTGAAAGAGC
TGCAGGCGCTCGATCAGCTTGCTGGAGCTGTCAACACGGCGGCGGAACCA
AAATCCGCTGCCGATCGATGTCCCACAAGCCAAACGCCGCGCCAGCCTCT
CCTTGCTCAGCAGCAGTCTACCCTGGGGTCTAGGAGCAGTCGCGGGGCTG
CGCAGCCCGCGCAGGCCCTGCGCAGGCTCTCCTTGGCGCTTGCTCAATTA
AAGTTGATTCGAGCTATTTTAATTGAAGTGAACAAACGATTTTTTTTCGG
CTTGTTCATTTCAAATCAAATGACAGAACGCCTCTCTAAAAATGTAATTA
AAAATGAAAGCTGCAATTAAAAGTGATCGATTGAACCGACCCTAAGGCGT
GCTTACAATTATCACGCTTCGAGACTTAGTTTTTCGCGAGATATTATCTC
CAATGTAAACGGCCCTTGGTACGTGGTCATTTCTGCATCAATTTTGAATG
CATGCACGTACGTTTGTTTTTTTCAACACGAAAAGCTCTGCGCCGTCGGC
CGCACGTTTGCCGTGGGTACTGCGCTAGCCGCGCCAGCCCCACGATGCAC
GACAGTGAAGCGAACAAAACAGTACGTCCCCGCTATCCTTATTAATTAAT
ACAAGAGTGAACCATCATATTCATAGCTATTTATAGACTCCCATTCTCAA
GTTGTTTCAACTAAAGCCCGATTGTGTCTAAATCCTATTCAGATATACGG
CTTTCGCTACGTCTGCCGTGGGTCGCCACACCGTATCTTCTAAACCCAAC
CCGCACATCGTCCTGCCAACTCACACCTCACGGGCGACAGCCGTGGCTTG
CAACCAGTACGTTATTAATATGGCTTTTGTTGGTGGGTGTATACACCGTG
GCCATCGGTAAATCATGCGATGCAGGTAAAGGTTTCCAAATACATACACT
CCCTCGTGTCCTCGGCGCGCCTGGCAGAGTTACCCTGCGGCACTTCGTTT
TCAAGGAGGGTCTGTTCAACACCTTCTTCACCCACTGCACTTCAAAAGAT
GGGAGCACAGGGCGGGCAACGCGGGAGGCTGGGGGTGGCGGACAGAATTG
CCCTGCGTGCGACGCCGAGGACATCACAGAGCTCACCTGCAGCCGGGCCT
GGGTCTTTCGTACCAAGTATGGCACGAACACGTCGGAGAGTATCAACGGG
AGCATCTCTGCTACCGTGTCCAAGCGGAGTGACCTCTTCGTCAGCCAATT
CGGCAGAGCCCACCTTGCCGTCCTCAAGAGGAACTTTCCTGGCGGGTACG
CTGCTTTGGTCCAGCACCTGCGCGAGCGGTTGGATTTGGAACCGCTGTCC
GAAGCCGCTGTCCGCGAGGTTGCCACCAGGGAGAAGGTCAACCGACACGT
GCCGCCGGCCGGTGAAGAAATTCGGACAAGGGAGCAATCGGCGGAGCGTA
CGAACTCCAAAGTCCAGACGAGAGGCGAGGAGTCCACGAGAACAACAGCG
GCGTTGGCGGGGCACAAGGTCGCCTGCAACGAACAGCCGTGCCCAACAGT
TGGGCAGGAGCAGCGCACGCGGATGGAGGCGGAGAAGGCGGAAATAAAAG
CTGCATCCATCGCGGCGAAAAAGGCAGCAACGGCGGCAAGAAAGGCCACA
GCGGCTGCGGCAAAAGCAGCAGCGGAAACGTCAGTGCGGAAGGGCAAGGG
CGGGGACCGTGGAAGCGCG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig10263:1338..3606+

>mRNA_S-dermatodea_contig10263.195.1 ID=mRNA_S-dermatodea_contig10263.195.1|Name=mRNA_S-dermatodea_contig10263.195.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1710bp|location=Sequence derived from alignment at S-dermatodea_contig10263:1338..3606+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAGGCGTACTGCAGGGCGTGCTGGCAGGTTGCAGATGCTGAAGCCGC
ACTTCGCGAGGCGAAGGGTGAGGTCGTCACCACCAACTACAACTTCAAGT
ATCCGGATAACACATGAAGGCGTACTGCAGGGCGTGCTGGCAGGTTGCAG
ATGCTGAAGCCGCACTTCGCGAGGCGAAGGGTGAGGTCGTCACCACCAAC
TACAACTTCAAGTATCCGGATAACACAGTTACCCTGCGGCACTTCGTTTT
CAAGGAGGGTCTGTTCAACACCTTCTTCACCCACTGCACTTCAAAAGATG
GGAGCACAGGGCGGGCAACGCGGGAGGCTGGGGGTGGCGGACAGAATTGC
CCTGCGTGCGACGCCGAGGACATCACAGAGCTCACCTGCAGCCGGGCCTG
GGTCTTTCGTACCAAGTATGGCACGAACACGTCGGAGAGTATCAACGGGA
GCATCTCTGCTACCGTGTCCAAGCGGAGTGACCTCTTCGTCAGCCAATTC
GGCAGAGCCCACCTTGCCGTCCTCAAGAGGAACTTTCCTGGCGGGTACGC
TGCTTTGGTCCAGCACCTGCGCGAGCGGTTGGATTTGGAACCGCTGTCCG
AAGCCGCTGTCCGCGAGGTTGCCACCAGGGAGAAGGTCAACCGACACGTG
CCGCCGGCCGGTGAAGAAATTCGGACAAGGGAGCAATCGGCGGAGCGTAC
GAACTCCAAAGTCCAGACGAGAGGCGAGGAGTCCACGAGAACAACAGCGG
CGTTGGCGGGGCACAAGGTCGCCTGCAACGAACAGCCGTGCCCAACAGTT
GGGCAGGAGCAGCGCACGCGGATGGAGGCGGAGAAGGCGGAAATAAAAGC
TGCATCCATCGCGGCGAAAAAGGCAGCAACGGCGGCAAGAAAGGCCACAG
CGGCTGCGGCAAAAGCAGCAGCGGAAACGTCAGTGCGGAAGGGCAAGGGC
GGGGACCGTGGAAGCGCGAGTTACCCTGCGGCACTTCGTTTTCAAGGAGG
GTCTGTTCAACACCTTCTTCACCCACTGCACTTCAAAAGATGGGAGCACA
GGGCGGGCAACGCGGGAGGCTGGGGGTGGCGGACAGAATTGCCCTGCGTG
CGACGCCGAGGACATCACAGAGCTCACCTGCAGCCGGGCCTGGGTCTTTC
GTACCAAGTATGGCACGAACACGTCGGAGAGTATCAACGGGAGCATCTCT
GCTACCGTGTCCAAGCGGAGTGACCTCTTCGTCAGCCAATTCGGCAGAGC
CCACCTTGCCGTCCTCAAGAGGAACTTTCCTGGCGGGTACGCTGCTTTGG
TCCAGCACCTGCGCGAGCGGTTGGATTTGGAACCGCTGTCCGAAGCCGCT
GTCCGCGAGGTTGCCACCAGGGAGAAGGTCAACCGACACGTGCCGCCGGC
CGGTGAAGAAATTCGGACAAGGGAGCAATCGGCGGAGCGTACGAACTCCA
AAGTCCAGACGAGAGGCGAGGAGTCCACGAGAACAACAGCGGCGTTGGCG
GGGCACAAGGTCGCCTGCAACGAACAGCCGTGCCCAACAGTTGGGCAGGA
GCAGCGCACGCGGATGGAGGCGGAGAAGGCGGAAATAAAAGCTGCATCCA
TCGCGGCGAAAAAGGCAGCAACGGCGGCAAGAAAGGCCACAGCGGCTGCG
GCAAAAGCAGCAGCGGAAACGTCAGTGCGGAAGGGCAAGGGCGGGGACCG
TGGAAGCGCG
back to top