mRNA_S-dermatodea_contig10256.188.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10256.188.1
Unique NamemRNA_S-dermatodea_contig10256.188.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig10256.188.1 vs. uniprot
Match: A0A6H5L4A6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4A6_9PHAE)

HSP 1 Score: 269 bits (688), Expect = 1.540e-80
Identity = 142/253 (56.13%), Postives = 171/253 (67.59%), Query Frame = 1
Query:    4 DPQTWAQSIQEYQRDKTHLAWNQAELPPPTYVKQYDVSRKSREVDPILMRHRDPAVEAQRKHREQERVRVTLNKARNRQLKAEQNYDIVSHTSHSGKKEPVARLARHPDSRTPYDILNHVSREQAHSLALIYPEGESPEVLPQKSTMLESGKKPHSHKGRDVDVLSNRFLEKHDERMVEEKRFLRERANEVFRRTRDYNPIAGRYYDEAKEQDFVRSREKFGALQGQAQRYRLPPSVRYIEGNDYDIISKQAR 762
            +PQTWA+SIQ Y+R KTHL WN A++PPPTYVKQ+DVSRKSRE+DP+LMR+                                                     +RHPD+RT YDILNHV +E+AHS+ALIYP  + PEVLPQK   +E GKKPHSH  RDVDVLSNRFLEKH+ERM EEKRFLRERA E +RRT DYN IAG YYD+ KE++FV SREK   +QG+AQ+YRLPPS+RY EGN Y+II++Q +
Sbjct:   11 EPQTWAESIQAYERGKTHLPWNPADVPPPTYVKQFDVSRKSREMDPVLMRY-----------------------------------------------------SRHPDTRTSYDILNHVPKEKAHSVALIYPNDKGPEVLPQKVVTVEGGKKPHSHLRRDVDVLSNRFLEKHEERMTEEKRFLRERAEEKYRRTHDYNIIAGAYYDQDKEREFVNSREKLLTMQGRAQQYRLPPSIRYGEGNGYNIINQQPK 210          
BLAST of mRNA_S-dermatodea_contig10256.188.1 vs. uniprot
Match: D8LS80_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS80_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 6.640e-32
Identity = 89/242 (36.78%), Postives = 108/242 (44.63%), Query Frame = 1
Query:   37 YQRDKTHLAWNQAELPPPTYVKQYDVSRKSREVDPILMRHRDPAVEAQRKHREQERVRVTLNKARNRQLKAEQNYDIVSHTSHSGKKEPVARLARHPDSRTPYDILNHVSREQAHSLALIYPEGESPEVLPQKSTMLESGKKPHSHKGRDVDVLSNRFLEKHDERMVEEKRFLRERANEVFRRTRDYNPIAGRYYDEAKEQDFVRSREKFGALQGQAQRYRLPPSVRYIEGNDYDIISKQAR 762
            Y+R KTHL WN A++PPPTYVKQ+DVSRKSRE+DP+LMRHR                                                                                                                    FLEKH+ERM EEKRFLRERA E +RRT DYN IAG YYD+ KE+ FV SR+K   +QG+AQ+YRLPPS+RY EGN Y+II++Q +
Sbjct:    6 YERGKTHLPWNPADVPPPTYVKQFDVSRKSREMDPVLMRHR--------------------------------------------------------------------------------------------------------------------FLEKHEERMTEEKRFLRERAEEKYRRTHDYNIIAGAYYDQDKERKFVNSRDKLLTMQGRAQQYRLPPSIRYGEGNGYNIINQQPK 131          
BLAST of mRNA_S-dermatodea_contig10256.188.1 vs. uniprot
Match: A0A836CLH1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLH1_9STRA)

HSP 1 Score: 133 bits (334), Expect = 3.780e-30
Identity = 91/256 (35.55%), Postives = 131/256 (51.17%), Query Frame = 1
Query:   13 TWAQSIQEYQRDKTHLAWNQAELPPPTYVKQYDVSRKSREVDPILMRHRDPAVEAQRKHREQERVRVTLNKARNRQLKAEQNYDIVSHTSHSGKK-----EPVARLARHPDSRTPYDILNHVSREQAHSLALIYPEGESPEVLPQKSTMLESGKKPHSHK-GRDVDVLSNRFLEKHDERMVEEKRFLRERANEVFRRTRDYNPIAGRYYDEAKEQDFVRSREKFGALQGQAQRYRLPPSVRYIEGNDYDIISKQAR 762
            TW + +Q Y   K+ L WN   +PP TYV  YDVSRK+RE+DP+L ++RD   EA +  +E  + +  L     +Q K +Q +DI+++ S S        +   R  + PDSRTPY+I+++   E+A        +   P       T  +  K   +H   RD +VLSN ++  H  R   E+      A   + RT D+N + GRYYD  KE  +  +       QG AQ  RLP SV Y EG  YDIISK+ +
Sbjct:    5 TWGEDLQLYAAAKSQLPWNPESVPPVTYVNTYDVSRKARELDPVLGKYRDADKEAAQARKEIAKCQQLLQAGMTKQAKTQQQFDILTNASLSRAPAQQTHDDYRRQRKEPDSRTPYNIISNT--EKAPGSRSAQQQSRRPN---NDRTENQRAKPSRAHAIQRDFNVLSNCYVANHSARTRSEQEAALTAAKAAYARTHDFNALEGRYYDANKESAYQAAVSSLKPAQGLAQARRLPRSVVYSEGQLYDIISKKPK 255          
BLAST of mRNA_S-dermatodea_contig10256.188.1 vs. uniprot
Match: A0A7S1CID5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CID5_9STRA)

HSP 1 Score: 126 bits (316), Expect = 4.410e-28
Identity = 89/255 (34.90%), Postives = 136/255 (53.33%), Query Frame = 1
Query:   16 WAQSIQEYQRDKTHLAWNQAELPPPT-YVKQYDVSRKSREVDPILMRHRDPAVEAQRKHREQERVRVTLNKARNRQLKAEQNYDIVSHTSHSGKKEPVARLARHP--DSRTPYDILNHVSREQAHSLALIYPEGESPEVLPQ---KSTMLESGKKPHSHKGRDVDVLSNRFLEKHDERMVEEKRFLRERANEVFRRTRDYNPIAGRYYDEAKEQDFVRSREKFGALQGQAQRYRLPPSVRYIEGNDYDIISKQAR 762
            W   I+ Y+  KT  AWN  E+     +V +Y+ SR+ RE DPIL  +RD   E+ +   +  +  V LN+AR++QL+  Q YDI++    +  KEP A+    P  DSRT Y+I+ ++   + H L    P G+ P        K T+     K      RD D++SNR++E H+E+   ++   R+ A E F +TR +NP+   YYDE KE  F ++  +     G  Q  RLPPSV+  EG  Y+++S + R
Sbjct:   22 WGDDIRRYKAAKTDAAWNVTEVAKSIKHVTRYEKSREEREFDPILQHYRDDGKESAKVTLDATKKLVALNRARDKQLRYTQTYDIINFVPRT--KEPPAQERPPPRADSRTNYNIITNMGLHEHHYL----PPGQRPPXXXXXXPKETLASRTTK------RDFDLISNRYMEAHEEKDAVDREMQRQAAAERFWQTRSFNPVTCAYYDEKKEDAFKQTVAEETRTWGSKQFARLPPSVKVSEGVAYNVLSMEER 264          
BLAST of mRNA_S-dermatodea_contig10256.188.1 vs. uniprot
Match: A0A7S3NS64_EUPCR (Hypothetical protein (Fragment) n=1 Tax=Euplotes crassus TaxID=5936 RepID=A0A7S3NS64_EUPCR)

HSP 1 Score: 95.1 bits (235), Expect = 4.070e-17
Identity = 78/256 (30.47%), Postives = 134/256 (52.34%), Query Frame = 1
Query:   16 WAQSIQEYQRDKTHLAWNQAELPPPTYVKQYDVSRKSREVDPILMRHRDPAVEAQRKHREQERVRVTLNKARNRQLKAEQNYDIVSHT-------SHSGKKEPVAR---LARHPDSRTPYDILNHVSREQAHSLALIYPEGESPEVLPQKSTMLESGKKPHSHKG-RDVDVLSNRFLEKHDERMVEEKRFLRERANEVFRRTRDYNPIAGRYYDEAKEQDFVRSREKFGALQGQAQRYRLPPSVRYIEGNDYDIIS 750
            W  ++Q Y   KT+L +NQ    P  +V+ +++ +     +PIL ++ D +VE Q K  E + +  TL K ++R L+ EQ +D+++         +  G  +P  +   +     + T Y+IL+++S  + H L    P  E P+     S   E   K  +  G RD ++++NR+LE +DE++V +K   R  A + + +T DY+P+  +YYD  KEQ+FV  RE    + GQ    +LP S +  EG  Y+ I+
Sbjct:   11 WRDTVQNYHMSKTNLQFNQE---PVKHVRHHEIKKIETMYNPILQKYSDSSVENQVKQAENDNLIDTLAKNKDRALRYEQTFDVINFDDKLKGLENQEGYPKPKPKNTNIVGGTKTFTEYNILSNLSFNEHHYL----PPEERPKA---PSDDKEKVTKKVTKTGLRDYNIITNRYLELNDEKVVVDKEIERLNAAKKYWKTHDYDPVNTQYYDPDKEQEFVDEREHNAKIHGQDWVQKLPKSWKE-EGGLYNPIN 255          
BLAST of mRNA_S-dermatodea_contig10256.188.1 vs. uniprot
Match: A0A1W0A3C8_9STRA (Gamma-tubulin complex component n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A3C8_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 2.680e-12
Identity = 67/248 (27.02%), Postives = 120/248 (48.39%), Query Frame = 1
Query:   13 TWAQSIQEYQRDKTHLAWNQAELPPPTYVKQYDVSRKSREVDPILMRHRDPAVEAQRKHREQERVRVTLNKARNRQLKAEQNYDIVSHTSHSGKKEPVARLARHPDSRTPYDILNHVSREQAHSLALIYPEGESPEVLPQKSTMLESGKKPHSHKGRDVDVLSNRFLEKHDERMVEEKRFLRERANEVFRRTRDYNPIAGRYYDEAKEQDFVRSREKFGALQGQAQRYRLPPSVRYIEGNDYDIISKQ 756
            +W + ++ Y+  K  + W   E  P  +V +Y+ SR  RE D +   +RD              V+  +N A+ +Q +  Q +++++H  +  +K+P       P++R  Y+I+N+   E   +L        S +    K  ML+S      H  R   V+SN++   HD R   E +  +  A   F +T D+NP+ G+YYD  KE++F++ R+    + G  +  +LP   +Y  G  Y+II++Q
Sbjct: 1116 SWGEDLRLYKSKKAVVPWRTEEQKPVKHVTRYEKSRAEREYDLVQAEYRD--------------VQRLMN-AKIKQSRYIQKHNLINH--YCAEKDPPIDTHIPPNTRVNYNIVNNELLETPPALC-------SHDDYKGKK-MLDS-----KHISRPFSVISNKYHTHHDVRSQTEAQATKNLAIMKFNQTHDFNPLLGQYYDNDKEENFLKVRDAKAKVHGVGRDDKLPYGEQYSAGRLYNIINQQ 1333          
BLAST of mRNA_S-dermatodea_contig10256.188.1 vs. uniprot
Match: A0A812V6G6_9DINO (TruC protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812V6G6_9DINO)

HSP 1 Score: 70.9 bits (172), Expect = 2.730e-9
Identity = 58/218 (26.61%), Postives = 108/218 (49.54%), Query Frame = 1
Query:    4 DPQTWAQSIQEYQRDKTHLAWNQAELPPPT--YVKQYDVSRKSREVDPILMRHRDPAVEAQRKHREQERVRVTLNKARNRQLKAEQNYDIVSHT---------SHSGKKEPVARLARHPDSRTPYDILNHVSREQAHSLALIYPEGESPEVLPQKSTMLESGKKPHSHKGRDVDVLSNRFLEKHDERMVEEKRFLRERANEVFRRTRDYNPIAGRYYD 624
            +PQ WA  +Q Y+R++  +  N      PT  YV+   +S++ R  +P+L R  D   E ++   E++  +  LN AR+ QL+ E  +D+V+H          + +G + PV +    PD+   Y+I++++   + H           P+  P+ S  +   +   +   +D ++L+NR+LE H E+M  ++      A E  R+T  +NP+  R+ D
Sbjct:    3 EPQGWAADLQSYERER-RVELNPGLFKGPTVGYVRG-GISKRERSYNPLLGRFLDEGREKEQAQFEEKVKKNFLNFARDVQLRREAPFDLVTHERKFEAFGPDASAGLEPPVKKKPPFPDTAADYNIISNLPFNEHHWA--------HPDHRPRPSQRIPKQRMAPAMLHKDFNILTNRYLEHHKEKMDRDRELNLLEAAEKLRQTSAFNPVQQRFCD 210          
BLAST of mRNA_S-dermatodea_contig10256.188.1 vs. uniprot
Match: A0A1Q9DWL2_SYMMI (tRNA pseudouridine synthase C n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9DWL2_SYMMI)

HSP 1 Score: 68.9 bits (167), Expect = 1.580e-8
Identity = 65/267 (24.34%), Postives = 130/267 (48.69%), Query Frame = 1
Query:    4 DPQTWAQSIQEYQRDKTHLAWNQAELPPPT--YVKQYDVSRKSREVDPILMRHRDPAVEAQRKHREQERVRVTLNKARNRQLKAEQNYDIVSHT---------SHSGKKEPVARLARHPDSRTPYDILNHVSREQAHSLALIYPEGESPEVLPQKSTMLESGKKPHSHKGRDVDVLSNRFLEKHDERMVEEKRFLRERANEVFRRTRDYNPIAGRYYDEAKEQDFVRSREKFGALQGQAQRYRLPPSV-RYIEGNDYDIISKQARAR 768
            +P  WA  +Q Y+R++  +  N      PT  YV+   +S++ R  +P+L R  D   E ++   E++  +  LN AR+ QL+ E  +D+V+H          + +G + PV +    PD+   Y+I++++   + H           P+  P+ S  +   +   +   +D ++L+N++LE H E+M  ++      A E  R+T  +NP+  R+ D  + ++ +R+ E     + + +   + P + R    N YD+++ Q + R
Sbjct:    3 EPHGWAADLQSYERER-RVELNPGLFKGPTVGYVRG-GISKRERSYNPLLGRFLDEGREQEQAQFEEKVKKNFLNFARDVQLRREAPFDLVTHERKFEAFGPDASAGLEPPVKKKPPFPDTAADYNIISNLPFNEHHWA--------HPDHRPRPSQRIPKQRMAPAMLHKDFNILTNKYLEHHKEKMDRDRELNLLEAAEKLRQTSAFNPVQQRFCD-PRHEERMRACEDALTTEIKLRGEEVQPLIYRGSVTNAYDMLNHQVKDR 258          
BLAST of mRNA_S-dermatodea_contig10256.188.1 vs. uniprot
Match: A0A482T1S9_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T1S9_9ARCH)

HSP 1 Score: 67.4 bits (163), Expect = 3.410e-8
Identity = 57/217 (26.27%), Postives = 109/217 (50.23%), Query Frame = 1
Query:  118 RKSREVDPILMRHRDPAVEAQRKHREQERVRVTLNKARNRQLKAEQNYDIVSHTSHSGKKEPVARLARHPDSRTPYDILNHVSREQAHSLALIYPEGE------SPEVLPQKSTMLESGKKPHSHKGRDVDVLSNRFLEKHDERMVEEKRFLRERANEVFRRTRDYNPIAGRYYDEAKEQDFVRSREKFGALQGQAQRYRLPPSVRYIEGNDYDIIS 750
            R+ RE+DP+ M +RDPA E   + ++ + ++  ++     +      YDIV H     K + +     +  +R+ + IL ++  E  H  A +  +G        P  +  K+++ +S         R+ +V+SN +   HD+R +E+   L+    + +    DY+ I GR+Y   K++ +    E   ++QG AQ  RLPPS++Y +GN Y++++
Sbjct:    9 RQERELDPVAMAYRDPAREDFYQKQKDDTIKKKVDFVNTMRS---DKYDIVGHFGPPRKIDTMKH--EYIPARSTH-ILTNLQYED-HINAPLLDDGTYALTKFRPNTVRAKTSIAQS---------REFNVISNEYKVNHDKRRLEDFEKLKTHLLKKYWDNHDYDMIKGRFYSPEKQKLYEEHLETIKSVQGTAQMERLPPSLKYSDGNSYNLLT 209          
BLAST of mRNA_S-dermatodea_contig10256.188.1 vs. uniprot
Match: A0A7S4EU07_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4EU07_CHRCT)

HSP 1 Score: 65.9 bits (159), Expect = 1.060e-7
Identity = 72/271 (26.57%), Postives = 110/271 (40.59%), Query Frame = 1
Query:    4 DPQTWAQSIQEYQRDKTHLAWNQAELPPPTYVKQYDVSRKSREVD-----PILMRHRDPAVEAQRKHREQERVRVTLNKARNRQLKAEQNYDIVSHTSHSGK---KEPV--------------ARLARHP-DSRTPYDILNHVSREQAH-SLALIYPEGESPEVLPQKSTMLESGKKPHSHKGRDVDVLSNRFLEKHDERMVEEKRFLRERANEVFRRTRDYNPIAGRYYDEAKEQDFVRSREKFGALQGQAQRYRLPPSVRYIEGNDYDI 744
            D  +W +++  Y   +         +P   Y K   V+   +  +     P+L    DPA E   K  E++ V   LN+AR+RQL  E  YDI++ +        KEP               A   RHP DS  P++I++++   Q H S     P     E                             ++E H+E+M  E+   R+ A   +  T DY+P+ G+Y D AKEQ  +  +     LQ      +LPPS++  EG  YDI
Sbjct:   12 DASSWGEALNNYDASRKTRP-----MPDEYYAKPARVTHAMKAAEDVTYHPVLQTFSDPAKETFAKQLEKQAVVSHLNRARDRQLAVESEYDILTMSDKRSTLKAKEPKKTRQPARDKAADYEAPRLRHPLDSAYPFNIVSNIPLTQHHYSAPTQRPSLPESEFRADXXXXXXXXXXXXXXXXXXXXXXXXTYVENHEEKMQRERDINRQTAAFKYWETHDYDPLLGKYVDPAKEQAALDRKAADEKLQPVKAFNQLPPSLQKGEGYVYDI 277          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10256.188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5L4A6_9PHAE1.540e-8056.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LS80_ECTSI6.640e-3236.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CLH1_9STRA3.780e-3035.55Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1CID5_9STRA4.410e-2834.90Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S3NS64_EUPCR4.070e-1730.47Hypothetical protein (Fragment) n=1 Tax=Euplotes c... [more]
A0A1W0A3C8_9STRA2.680e-1227.02Gamma-tubulin complex component n=1 Tax=Thraustoth... [more]
A0A812V6G6_9DINO2.730e-926.61TruC protein n=2 Tax=Symbiodinium TaxID=2949 RepID... [more]
A0A1Q9DWL2_SYMMI1.580e-824.34tRNA pseudouridine synthase C n=2 Tax=Symbiodinium... [more]
A0A482T1S9_9ARCH3.410e-826.27Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S4EU07_CHRCT1.060e-726.57Hypothetical protein n=2 Tax=Chrysotila carterae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10256contigS-dermatodea_contig10256:1977..6762 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.0
Seed ortholog evalue2.7e-21
Seed eggNOG ortholog44056.XP_009033459.1
EggNOG OGs2AXZZ@1,2S023@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_004500.1
Exons5
Model size1825
Cds size630
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924147.9625638-UTR-S-dermatodea_contig10256:1976..30241622924147.9625638-UTR-S-dermatodea_contig10256:1976..3024Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10256 1977..3024 -
1694079050.4131155-UTR-S-dermatodea_contig10256:1976..30241694079050.4131155-UTR-S-dermatodea_contig10256:1976..3024Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10256 1977..3024 -
1622924148.0146883-UTR-S-dermatodea_contig10256:6410..65241622924148.0146883-UTR-S-dermatodea_contig10256:6410..6524Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10256 6411..6524 -
1694079050.4570622-UTR-S-dermatodea_contig10256:6410..65241694079050.4570622-UTR-S-dermatodea_contig10256:6410..6524Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10256 6411..6524 -
1622924148.0267913-UTR-S-dermatodea_contig10256:6729..67621622924148.0267913-UTR-S-dermatodea_contig10256:6729..6762Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10256 6730..6762 -
1694079050.4655824-UTR-S-dermatodea_contig10256:6729..67621694079050.4655824-UTR-S-dermatodea_contig10256:6729..6762Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10256 6730..6762 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924147.9725657-CDS-S-dermatodea_contig10256:3024..32951622924147.9725657-CDS-S-dermatodea_contig10256:3024..3295Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10256 3025..3295 -
1694079050.4246893-CDS-S-dermatodea_contig10256:3024..32951694079050.4246893-CDS-S-dermatodea_contig10256:3024..3295Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10256 3025..3295 -
1622924147.982982-CDS-S-dermatodea_contig10256:3899..41081622924147.982982-CDS-S-dermatodea_contig10256:3899..4108Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10256 3900..4108 -
1694079050.432255-CDS-S-dermatodea_contig10256:3899..41081694079050.432255-CDS-S-dermatodea_contig10256:3899..4108Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10256 3900..4108 -
1622924147.996027-CDS-S-dermatodea_contig10256:5794..59331622924147.996027-CDS-S-dermatodea_contig10256:5794..5933Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10256 5795..5933 -
1694079050.4400403-CDS-S-dermatodea_contig10256:5794..59331694079050.4400403-CDS-S-dermatodea_contig10256:5794..5933Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10256 5795..5933 -
1622924148.0053399-CDS-S-dermatodea_contig10256:6399..64101622924148.0053399-CDS-S-dermatodea_contig10256:6399..6410Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10256 6400..6410 -
1694079050.448752-CDS-S-dermatodea_contig10256:6399..64101694079050.448752-CDS-S-dermatodea_contig10256:6399..6410Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10256 6400..6410 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10256.188.1prot_S-dermatodea_contig10256.188.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10256 3025..6410 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10256.188.1

>prot_S-dermatodea_contig10256.188.1 ID=prot_S-dermatodea_contig10256.188.1|Name=mRNA_S-dermatodea_contig10256.188.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=210bp
MRHRDPAVEAQRKHREQERVRVTLNKARNRQLKAEQNYDIVSHTSHSGKK
EPVARLARHPDSRTPYDILNHVSREQAHSLALIYPEGESPEVLPQKSTML
ESGKKPHSHKGRDVDVLSNRFLEKHDERMVEEKRFLRERANEVFRRTRDY
NPIAGRYYDEAKEQDFVRSREKFGALQGQAQRYRLPPSVRYIEGNDYDII
SKQARARTK*
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mRNA from alignment at S-dermatodea_contig10256:1977..6762-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10256.188.1 ID=mRNA_S-dermatodea_contig10256.188.1|Name=mRNA_S-dermatodea_contig10256.188.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4786bp|location=Sequence derived from alignment at S-dermatodea_contig10256:1977..6762- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGAGATCCGCAGACATGGGCACAGTCAATTCAGGTCAGGAAGAGCGCTGA TATTTGGTCGTAAAGTCGATTGGGCTCTAGAGCTCAAATGCATTTCACGA ATCACGAATCACACGCTTACGTCCAAGAACACGAGGTATCAACTTGCCGT ATGTGTCCTTTGTATCCAGCCTTATTTGCTACAAGTACAGCAGTGCAGAG GGAGAGCTTACGCCCATATAAAACTGTGTCTGCGTTAGGAGTACCAACGA GACAAAACGCACCTTGCGTGGAACCAAGCCGAGCTTCCACCGCCGACTTA CGTGAAGCAATACGATGTATCGCGCAAGAGCAGGGAGGTGGACCCTATCC TCATGCGGCACAGGTATGCGGGGAAACGCTGCTCGTATTGTGATACATGT GATACGGTCGACGACCAGCAGTGCTGTATCACGATCGCCCGGGACCATTT GTGCGGCGGTATCATACCACAAGTACGGTGTAGTACTGCTGTTGTGACGT GCAGTAACGACACTGAGGTACAACAACACTGAGGTACTCCCAAGAAACCG CGAAAAACATATGTGCACAATTCCACGGTGTATCCCCACCTTGCTTTGCA GATGTTTATATGGTACGCCTCATGTCCCTCAGCCTCAGGGAGGACTTCTA CAAAGTATCATACCGTATGATAATACATCAGTCAACCACGTATGCATACC TGCAACGAAATCACGAGCATAAATGGGTTTTGAAATGTCAACTCGTTTTC GTTCGCAGACCGCGAGTAGACACGCTATTCGTCTGACACTCAGCGTTAGT GTCGCGCGGGCTCCATCTCTCTTACGCAGGGATCCCGCTGTCGAGGCGCA AAGGAAACATCGAGAGCAAGAGCGCGTACGAGTCACTCTCAACAAGGCTA GAAACCGGCAGTTGAAGGCCGAACAAAATTACGACATCGTCAGCCACACT TCGCACTCTGGAAAGAAGGTTGGCCAGAAGAACTCTGTTCCGTTGCGTGT AATTTGACGTCATGCATACCCGTACGAGAGAGCAAGGGCTGGTTTCCGAA AAGCCAGCCTGTTTACAGTATGTCTAATACCCAAAAATGTCGGGGGATTG TCATTATTGTACGAAACCGTGGACGGTCCATGGACCGTCACGGACGCTCC ACGGACGCTCCACGGACGCTCCACGGCCGAACGTGGACTGTGCATGGTTC GTCCACGGACTGTCCGCGGACGCTTCAAAACACATGGTTTCGTAATATTT TGGATTGTCCGTAGTCGGGCCGTGAACGAACCGTGGACGATCCACAGATT CGGACGCTTCGCGGACGCTTCAGGGACGGTCCGCGCCCTGTTCACGGAAA TATGGACGAATGTGGACGACCCATGGATGGTTCGGTGGACCATCCACGGG TGGTCTTCCGTGGACCGTCCGTGGACCGTCCGTGGTTGTTGTTGTTGCTG GATAGGTTGGCTGTCCTGTTTAATATATAATGGGTTGATTATTTTGTTGT GATTGGATCTATGATATCATACCAGGTATCATATTTACTATAATCACCAT ACAGAATACCATAGGTCACTCGGTGTTGCTAATTAGGGTAAGTTGTATTG TTGAACACAGACAGTAGTAGCAGTATCGCGTCTTAATGTATCAAGGACTA TTTACTGTCGCACTATAACGTGCAGGTGAAGTGTTTAATCAAATATCATA CTATATAATATTAAGTAGGTCAATCGGTGTTGGTAATTAGGGTATTTTTT ATTGTTGCACGTTTATATATGTCAAGAAATACATACTACTGCGGTAGCAT AATAACGTGTGTAGGTTAAGCATGTAGTAAACTGCGCGTTACCGAGGTGG TGCCGTTGAGCCACGACGAAACCCACAGCAGTAAATACATACATAGGTCA TGTAGATACAAGTAGTGTTTGTAAAGAACCATGAAATCACACGCAACGTA AGCCTCCATAGGCGCGGACCGGCCGCGAACGATCCGCGGTCGATCGGTTC TTTGCGGACCGTCCACGGAGCATCCGTGGACGGTTCGCAAATAGGACGTG GACCGTGAACTGTCCGCGGACGGCCTGCGATTGGTTTGCAGGTGGACAGT CAACGGACAGTCCATGGACTGTCCGTGGAATGTCCGTGGACTCTCCACGG TTTCGTACAATAATGACCAGGCTTAAAAATGTCTTTGTCCGTGCAGGACT TTCTCGCTGCACAAACACTGCGTATAACGACCTTGCTTGTTCCCTACGCG AGCCCTTCTCCCATCGGCTTCATTTTTATCATCACGTTAGTAACGCTCCA TTTTTCTGGGCATTTGTCGGAGGTGTCCGTTCCTCTCCCCCCCATTTTGA GCCTTCGACCAGTGTGCCTCGCATCTGGTCTAGCACTCACTACCTATATT AGCCCGTTTTCCTCGGATTCTTGCTTTCACGGTGTGGTGATTTCCCTGAT GGAATAAATACATAAGTTACCTTGCCGCGCTGCAAATCCGGGACAATCCT GAAATTGTACCATCCAAGACCTCGGTCTCATCCTTGTTTGCTTGAACGGC CAACCATTGGAAAGTAAAGTCTATCCCTGTCTGTATGTCGAAAAAACGGC CCGTGGATCCCGTGTCTTGACACCAAAACCATAACCTCTCTACAATACAT GCAGGAGCCCGTGGCAAGACTCGCCCGCCATCCTGACTCGAGGACACCCT ACGATATCCTCAACCACGTGTCAAGAGAACAAGCGCACTCCCTTGCTCTC ATCTATCCAGAGGGGGAGTCTCCTGAGGTGCTGCCGCAAAAATCAACTAT GCTGGAGAGCGGCAAGAAGCCCCACAGCCATAAGGGACGAGACGTGGACG TGCTAAGTAACAGGTGTGTTAGCAAGCACGGTAACGCTCCAGTACTCGGT TCAAGCGCGTACGCGATTTCGGGGTGTAGACGTTGATCGTTCAAAACAAA GTGCAGGCAGACGTGCCTGGAGAGAAACATATAGAGAGACCGGGGGGGGG GGGCTGCGAGCGGGCGAAACCCCTCGGACTTTGTTTGTGTTGCTATTCGT GAAAGCTGAGCACAGCGGGTTAGCAAGCCAATTGAACGGAAGAGAGGGCG CAGCGAGGACCGTCGCCATGCGCTCCAAGAAGAACGTTGCCGTTTTTCTT GCAAAAAGAGGGAGTCGCTATTTCACAGTAAGCAGTGTCGTGGCATGCCC GATGCATACGTAAAATGTGGCATGATAGGGTCCCCTTCTCACACCTCTGT TGAAGTCTTGCGTTTGTCGCCACGAAAATTCTAGCGTATGCTGCAAACAG GGTGCACACGGTTCTTGGAATATACAGTAGTATTTCTAAGCGGAAAAGTG TTCGTCGCTGTCAGCATGATCTGTGCGGTGATAGCCGTGGAACAGTTAAC AGTATATCCAGAGTTCGGCTCCCTCTATCCCCCCAACCGAATCGTTACCG ACTCGACCGGCCAAAAGGTTCTTGGAGAAGCATGATGAACGCATGGTCGA AGAGAAACGCTTCCTACGAGAAAGGGCAAACGAAGTATTTCGCCGCACAC GCGACTATAATCCCATCGCCGGGAGGTACTACGACGAGGCGAAGGAGCAG GACTTCGTGCGTTCTAGGGAGAAATTTGGAGCTCTTCAAGGCCAGGCGCA GCGGTACCGACTCCCTCCGAGTGTACGATACATCGAGGGCAACGACTACG ATATCATCAGCAAGCAGGCACGAGCTAGAACCAAATAAGTAGATAGATTA GTTTAACTACGCAAGGAATATGTTCCCTCTTGACGGAAGCGCCTTGTCTC GTAGTGAAAACCATGCTAAGGTAGAAATTGAAGGTCCGTGGCTAGCTTTC GGTGGTAAAGTCAGTAAGTCGTGGGAACTTCGATCTCAAAGTTGACCTCT CGGTTAGTCTGGGTCGGTACGCTTTGTCTCCGATCCAAAGCTCAAAGCGA AACAAGCGGAGTCATTTTTCCGACATGCTTCCCGATAGGATGTTGAACCG CATACCATACCAACAACAACGACGGAGGGAGGCTACCGCTGATTTACGCT GATTTGCGCCACTGGTAGCTCTTGTCATTTCTCGTTTCCGGCCGACTAAT CCCGCCTTCTCACCGCCCCCGACACTACACGCGGTGCCGCGCCCTGCTTC CGGCTACCAACGCCACAGCCCAAGAGCACGACACAAACAGTTCCTGTGGC CGACCGTGGCCTCACGAAGCGTTGTCGCGGGCGACAGGCACACGAGGAAA ACGTCCGCCAACACGAGCGCCAGCACGAGCGCGCGGACCAACGCATCCTC AACCGCCCTTCTCACATGCGGCACGTCGAGGTTCTCCGCACGGGACACGA CGTCATTTCAAACCAGGTGTTCACGGGGCGACAAGGACGCCCGCCGGCGA AGCCGCGCGCGCGACCCCCCGCTCCAGTGTGGGACAGATTGTCGGGACCG GAGGTTAGCACGTGGCTGGGGTCGCAAGGTGTGGCGGAAAAGGCGTCGAC GCATCGAGGGGGCGAAGAACAAGGCCAAGACGAGAAAAAAGGTGGCGACC GCGGCGGCGGCGAGGGGGGGGGCGACCATAAGGGTGATTCGTACGGAGCC GAGAACAGCGGGAGCGGCTCACGTGGGCGCGGTAACGAAGTAAACGACAT CGTCGTCGGAAGTGGTCGAAGGCTGGAACGAGATAACCGTGTGAACGAAG CCCTGTCTGGTGGGAGAGAACGTGGCGAAACGGGAGCGGCAGCGAAAAGT AGTACGCAGATAGTGCCTCCGTTGGATCTCTCCCGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10256:1977..6762-

>mRNA_S-dermatodea_contig10256.188.1 ID=mRNA_S-dermatodea_contig10256.188.1|Name=mRNA_S-dermatodea_contig10256.188.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1260bp|location=Sequence derived from alignment at S-dermatodea_contig10256:1977..6762- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGGCACAGATGCGGCACAGGGATCCCGCTGTCGAGGCGCAAAGGAAA
CATCGAGAGCAAGAGCGCGTACGAGTCACTCTCAACAAGGCTAGAAACCG
GCAGTTGAAGGCCGAACAAAATTACGACATCGTCAGCCACACTTCGCACT
CTGGAAAGAAGGGATCCCGCTGTCGAGGCGCAAAGGAAACATCGAGAGCA
AGAGCGCGTACGAGTCACTCTCAACAAGGCTAGAAACCGGCAGTTGAAGG
CCGAACAAAATTACGACATCGTCAGCCACACTTCGCACTCTGGAAAGAAG
GAGCCCGTGGCAAGACTCGCCCGCCATCCTGACTCGAGGACACCCTACGA
TATCCTCAACCACGTGTCAAGAGAACAAGCGCACTCCCTTGCTCTCATCT
ATCCAGAGGGGGAGTCTCCTGAGGTGCTGCCGCAAAAATCAACTATGCTG
GAGAGCGGCAAGAAGCCCCACAGCCATAAGGGACGAGACGTGGACGTGCT
AAGTAACAGGAGCCCGTGGCAAGACTCGCCCGCCATCCTGACTCGAGGAC
ACCCTACGATATCCTCAACCACGTGTCAAGAGAACAAGCGCACTCCCTTG
CTCTCATCTATCCAGAGGGGGAGTCTCCTGAGGTGCTGCCGCAAAAATCA
ACTATGCTGGAGAGCGGCAAGAAGCCCCACAGCCATAAGGGACGAGACGT
GGACGTGCTAAGTAACAGGTTCTTGGAGAAGCATGATGAACGCATGGTCG
AAGAGAAACGCTTCCTACGAGAAAGGGCAAACGAAGTATTTCGCCGCACA
CGCGACTATAATCCCATCGCCGGGAGGTACTACGACGAGGCGAAGGAGCA
GGACTTCGTGCGTTCTAGGGAGAAATTTGGAGCTCTTCAAGGCCAGGCGC
AGCGGTACCGACTCCCTCCGAGTGTACGATACATCGAGGGCAACGACTAC
GATATCATCAGCAAGCAGGCACGAGCTAGAACCAAATAAGTTCTTGGAGA
AGCATGATGAACGCATGGTCGAAGAGAAACGCTTCCTACGAGAAAGGGCA
AACGAAGTATTTCGCCGCACACGCGACTATAATCCCATCGCCGGGAGGTA
CTACGACGAGGCGAAGGAGCAGGACTTCGTGCGTTCTAGGGAGAAATTTG
GAGCTCTTCAAGGCCAGGCGCAGCGGTACCGACTCCCTCCGAGTGTACGA
TACATCGAGGGCAACGACTACGATATCATCAGCAAGCAGGCACGAGCTAG
AACCAAATAA
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