mRNA_S-dermatodea_contig10256.188.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig10256.188.1 vs. uniprot
Match: A0A6H5L4A6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4A6_9PHAE) HSP 1 Score: 269 bits (688), Expect = 1.540e-80 Identity = 142/253 (56.13%), Postives = 171/253 (67.59%), Query Frame = 1
Query: 4 DPQTWAQSIQEYQRDKTHLAWNQAELPPPTYVKQYDVSRKSREVDPILMRHRDPAVEAQRKHREQERVRVTLNKARNRQLKAEQNYDIVSHTSHSGKKEPVARLARHPDSRTPYDILNHVSREQAHSLALIYPEGESPEVLPQKSTMLESGKKPHSHKGRDVDVLSNRFLEKHDERMVEEKRFLRERANEVFRRTRDYNPIAGRYYDEAKEQDFVRSREKFGALQGQAQRYRLPPSVRYIEGNDYDIISKQAR 762
+PQTWA+SIQ Y+R KTHL WN A++PPPTYVKQ+DVSRKSRE+DP+LMR+ +RHPD+RT YDILNHV +E+AHS+ALIYP + PEVLPQK +E GKKPHSH RDVDVLSNRFLEKH+ERM EEKRFLRERA E +RRT DYN IAG YYD+ KE++FV SREK +QG+AQ+YRLPPS+RY EGN Y+II++Q +
Sbjct: 11 EPQTWAESIQAYERGKTHLPWNPADVPPPTYVKQFDVSRKSREMDPVLMRY-----------------------------------------------------SRHPDTRTSYDILNHVPKEKAHSVALIYPNDKGPEVLPQKVVTVEGGKKPHSHLRRDVDVLSNRFLEKHEERMTEEKRFLRERAEEKYRRTHDYNIIAGAYYDQDKEREFVNSREKLLTMQGRAQQYRLPPSIRYGEGNGYNIINQQPK 210
BLAST of mRNA_S-dermatodea_contig10256.188.1 vs. uniprot
Match: D8LS80_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS80_ECTSI) HSP 1 Score: 136 bits (343), Expect = 6.640e-32 Identity = 89/242 (36.78%), Postives = 108/242 (44.63%), Query Frame = 1
Query: 37 YQRDKTHLAWNQAELPPPTYVKQYDVSRKSREVDPILMRHRDPAVEAQRKHREQERVRVTLNKARNRQLKAEQNYDIVSHTSHSGKKEPVARLARHPDSRTPYDILNHVSREQAHSLALIYPEGESPEVLPQKSTMLESGKKPHSHKGRDVDVLSNRFLEKHDERMVEEKRFLRERANEVFRRTRDYNPIAGRYYDEAKEQDFVRSREKFGALQGQAQRYRLPPSVRYIEGNDYDIISKQAR 762
Y+R KTHL WN A++PPPTYVKQ+DVSRKSRE+DP+LMRHR FLEKH+ERM EEKRFLRERA E +RRT DYN IAG YYD+ KE+ FV SR+K +QG+AQ+YRLPPS+RY EGN Y+II++Q +
Sbjct: 6 YERGKTHLPWNPADVPPPTYVKQFDVSRKSREMDPVLMRHR--------------------------------------------------------------------------------------------------------------------FLEKHEERMTEEKRFLRERAEEKYRRTHDYNIIAGAYYDQDKERKFVNSRDKLLTMQGRAQQYRLPPSIRYGEGNGYNIINQQPK 131
BLAST of mRNA_S-dermatodea_contig10256.188.1 vs. uniprot
Match: A0A836CLH1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLH1_9STRA) HSP 1 Score: 133 bits (334), Expect = 3.780e-30 Identity = 91/256 (35.55%), Postives = 131/256 (51.17%), Query Frame = 1
Query: 13 TWAQSIQEYQRDKTHLAWNQAELPPPTYVKQYDVSRKSREVDPILMRHRDPAVEAQRKHREQERVRVTLNKARNRQLKAEQNYDIVSHTSHSGKK-----EPVARLARHPDSRTPYDILNHVSREQAHSLALIYPEGESPEVLPQKSTMLESGKKPHSHK-GRDVDVLSNRFLEKHDERMVEEKRFLRERANEVFRRTRDYNPIAGRYYDEAKEQDFVRSREKFGALQGQAQRYRLPPSVRYIEGNDYDIISKQAR 762
TW + +Q Y K+ L WN +PP TYV YDVSRK+RE+DP+L ++RD EA + +E + + L +Q K +Q +DI+++ S S + R + PDSRTPY+I+++ E+A + P T + K +H RD +VLSN ++ H R E+ A + RT D+N + GRYYD KE + + QG AQ RLP SV Y EG YDIISK+ +
Sbjct: 5 TWGEDLQLYAAAKSQLPWNPESVPPVTYVNTYDVSRKARELDPVLGKYRDADKEAAQARKEIAKCQQLLQAGMTKQAKTQQQFDILTNASLSRAPAQQTHDDYRRQRKEPDSRTPYNIISNT--EKAPGSRSAQQQSRRPN---NDRTENQRAKPSRAHAIQRDFNVLSNCYVANHSARTRSEQEAALTAAKAAYARTHDFNALEGRYYDANKESAYQAAVSSLKPAQGLAQARRLPRSVVYSEGQLYDIISKKPK 255
BLAST of mRNA_S-dermatodea_contig10256.188.1 vs. uniprot
Match: A0A7S1CID5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CID5_9STRA) HSP 1 Score: 126 bits (316), Expect = 4.410e-28 Identity = 89/255 (34.90%), Postives = 136/255 (53.33%), Query Frame = 1
Query: 16 WAQSIQEYQRDKTHLAWNQAELPPPT-YVKQYDVSRKSREVDPILMRHRDPAVEAQRKHREQERVRVTLNKARNRQLKAEQNYDIVSHTSHSGKKEPVARLARHP--DSRTPYDILNHVSREQAHSLALIYPEGESPEVLPQ---KSTMLESGKKPHSHKGRDVDVLSNRFLEKHDERMVEEKRFLRERANEVFRRTRDYNPIAGRYYDEAKEQDFVRSREKFGALQGQAQRYRLPPSVRYIEGNDYDIISKQAR 762
W I+ Y+ KT AWN E+ +V +Y+ SR+ RE DPIL +RD E+ + + + V LN+AR++QL+ Q YDI++ + KEP A+ P DSRT Y+I+ ++ + H L P G+ P K T+ K RD D++SNR++E H+E+ ++ R+ A E F +TR +NP+ YYDE KE F ++ + G Q RLPPSV+ EG Y+++S + R
Sbjct: 22 WGDDIRRYKAAKTDAAWNVTEVAKSIKHVTRYEKSREEREFDPILQHYRDDGKESAKVTLDATKKLVALNRARDKQLRYTQTYDIINFVPRT--KEPPAQERPPPRADSRTNYNIITNMGLHEHHYL----PPGQRPPXXXXXXPKETLASRTTK------RDFDLISNRYMEAHEEKDAVDREMQRQAAAERFWQTRSFNPVTCAYYDEKKEDAFKQTVAEETRTWGSKQFARLPPSVKVSEGVAYNVLSMEER 264
BLAST of mRNA_S-dermatodea_contig10256.188.1 vs. uniprot
Match: A0A7S3NS64_EUPCR (Hypothetical protein (Fragment) n=1 Tax=Euplotes crassus TaxID=5936 RepID=A0A7S3NS64_EUPCR) HSP 1 Score: 95.1 bits (235), Expect = 4.070e-17 Identity = 78/256 (30.47%), Postives = 134/256 (52.34%), Query Frame = 1
Query: 16 WAQSIQEYQRDKTHLAWNQAELPPPTYVKQYDVSRKSREVDPILMRHRDPAVEAQRKHREQERVRVTLNKARNRQLKAEQNYDIVSHT-------SHSGKKEPVAR---LARHPDSRTPYDILNHVSREQAHSLALIYPEGESPEVLPQKSTMLESGKKPHSHKG-RDVDVLSNRFLEKHDERMVEEKRFLRERANEVFRRTRDYNPIAGRYYDEAKEQDFVRSREKFGALQGQAQRYRLPPSVRYIEGNDYDIIS 750
W ++Q Y KT+L +NQ P +V+ +++ + +PIL ++ D +VE Q K E + + TL K ++R L+ EQ +D+++ + G +P + + + T Y+IL+++S + H L P E P+ S E K + G RD ++++NR+LE +DE++V +K R A + + +T DY+P+ +YYD KEQ+FV RE + GQ +LP S + EG Y+ I+
Sbjct: 11 WRDTVQNYHMSKTNLQFNQE---PVKHVRHHEIKKIETMYNPILQKYSDSSVENQVKQAENDNLIDTLAKNKDRALRYEQTFDVINFDDKLKGLENQEGYPKPKPKNTNIVGGTKTFTEYNILSNLSFNEHHYL----PPEERPKA---PSDDKEKVTKKVTKTGLRDYNIITNRYLELNDEKVVVDKEIERLNAAKKYWKTHDYDPVNTQYYDPDKEQEFVDEREHNAKIHGQDWVQKLPKSWKE-EGGLYNPIN 255
BLAST of mRNA_S-dermatodea_contig10256.188.1 vs. uniprot
Match: A0A1W0A3C8_9STRA (Gamma-tubulin complex component n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A3C8_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 2.680e-12 Identity = 67/248 (27.02%), Postives = 120/248 (48.39%), Query Frame = 1
Query: 13 TWAQSIQEYQRDKTHLAWNQAELPPPTYVKQYDVSRKSREVDPILMRHRDPAVEAQRKHREQERVRVTLNKARNRQLKAEQNYDIVSHTSHSGKKEPVARLARHPDSRTPYDILNHVSREQAHSLALIYPEGESPEVLPQKSTMLESGKKPHSHKGRDVDVLSNRFLEKHDERMVEEKRFLRERANEVFRRTRDYNPIAGRYYDEAKEQDFVRSREKFGALQGQAQRYRLPPSVRYIEGNDYDIISKQ 756
+W + ++ Y+ K + W E P +V +Y+ SR RE D + +RD V+ +N A+ +Q + Q +++++H + +K+P P++R Y+I+N+ E +L S + K ML+S H R V+SN++ HD R E + + A F +T D+NP+ G+YYD KE++F++ R+ + G + +LP +Y G Y+II++Q
Sbjct: 1116 SWGEDLRLYKSKKAVVPWRTEEQKPVKHVTRYEKSRAEREYDLVQAEYRD--------------VQRLMN-AKIKQSRYIQKHNLINH--YCAEKDPPIDTHIPPNTRVNYNIVNNELLETPPALC-------SHDDYKGKK-MLDS-----KHISRPFSVISNKYHTHHDVRSQTEAQATKNLAIMKFNQTHDFNPLLGQYYDNDKEENFLKVRDAKAKVHGVGRDDKLPYGEQYSAGRLYNIINQQ 1333
BLAST of mRNA_S-dermatodea_contig10256.188.1 vs. uniprot
Match: A0A812V6G6_9DINO (TruC protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812V6G6_9DINO) HSP 1 Score: 70.9 bits (172), Expect = 2.730e-9 Identity = 58/218 (26.61%), Postives = 108/218 (49.54%), Query Frame = 1
Query: 4 DPQTWAQSIQEYQRDKTHLAWNQAELPPPT--YVKQYDVSRKSREVDPILMRHRDPAVEAQRKHREQERVRVTLNKARNRQLKAEQNYDIVSHT---------SHSGKKEPVARLARHPDSRTPYDILNHVSREQAHSLALIYPEGESPEVLPQKSTMLESGKKPHSHKGRDVDVLSNRFLEKHDERMVEEKRFLRERANEVFRRTRDYNPIAGRYYD 624
+PQ WA +Q Y+R++ + N PT YV+ +S++ R +P+L R D E ++ E++ + LN AR+ QL+ E +D+V+H + +G + PV + PD+ Y+I++++ + H P+ P+ S + + + +D ++L+NR+LE H E+M ++ A E R+T +NP+ R+ D
Sbjct: 3 EPQGWAADLQSYERER-RVELNPGLFKGPTVGYVRG-GISKRERSYNPLLGRFLDEGREKEQAQFEEKVKKNFLNFARDVQLRREAPFDLVTHERKFEAFGPDASAGLEPPVKKKPPFPDTAADYNIISNLPFNEHHWA--------HPDHRPRPSQRIPKQRMAPAMLHKDFNILTNRYLEHHKEKMDRDRELNLLEAAEKLRQTSAFNPVQQRFCD 210
BLAST of mRNA_S-dermatodea_contig10256.188.1 vs. uniprot
Match: A0A1Q9DWL2_SYMMI (tRNA pseudouridine synthase C n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9DWL2_SYMMI) HSP 1 Score: 68.9 bits (167), Expect = 1.580e-8 Identity = 65/267 (24.34%), Postives = 130/267 (48.69%), Query Frame = 1
Query: 4 DPQTWAQSIQEYQRDKTHLAWNQAELPPPT--YVKQYDVSRKSREVDPILMRHRDPAVEAQRKHREQERVRVTLNKARNRQLKAEQNYDIVSHT---------SHSGKKEPVARLARHPDSRTPYDILNHVSREQAHSLALIYPEGESPEVLPQKSTMLESGKKPHSHKGRDVDVLSNRFLEKHDERMVEEKRFLRERANEVFRRTRDYNPIAGRYYDEAKEQDFVRSREKFGALQGQAQRYRLPPSV-RYIEGNDYDIISKQARAR 768
+P WA +Q Y+R++ + N PT YV+ +S++ R +P+L R D E ++ E++ + LN AR+ QL+ E +D+V+H + +G + PV + PD+ Y+I++++ + H P+ P+ S + + + +D ++L+N++LE H E+M ++ A E R+T +NP+ R+ D + ++ +R+ E + + + + P + R N YD+++ Q + R
Sbjct: 3 EPHGWAADLQSYERER-RVELNPGLFKGPTVGYVRG-GISKRERSYNPLLGRFLDEGREQEQAQFEEKVKKNFLNFARDVQLRREAPFDLVTHERKFEAFGPDASAGLEPPVKKKPPFPDTAADYNIISNLPFNEHHWA--------HPDHRPRPSQRIPKQRMAPAMLHKDFNILTNKYLEHHKEKMDRDRELNLLEAAEKLRQTSAFNPVQQRFCD-PRHEERMRACEDALTTEIKLRGEEVQPLIYRGSVTNAYDMLNHQVKDR 258
BLAST of mRNA_S-dermatodea_contig10256.188.1 vs. uniprot
Match: A0A482T1S9_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T1S9_9ARCH) HSP 1 Score: 67.4 bits (163), Expect = 3.410e-8 Identity = 57/217 (26.27%), Postives = 109/217 (50.23%), Query Frame = 1
Query: 118 RKSREVDPILMRHRDPAVEAQRKHREQERVRVTLNKARNRQLKAEQNYDIVSHTSHSGKKEPVARLARHPDSRTPYDILNHVSREQAHSLALIYPEGE------SPEVLPQKSTMLESGKKPHSHKGRDVDVLSNRFLEKHDERMVEEKRFLRERANEVFRRTRDYNPIAGRYYDEAKEQDFVRSREKFGALQGQAQRYRLPPSVRYIEGNDYDIIS 750
R+ RE+DP+ M +RDPA E + ++ + ++ ++ + YDIV H K + + + +R+ + IL ++ E H A + +G P + K+++ +S R+ +V+SN + HD+R +E+ L+ + + DY+ I GR+Y K++ + E ++QG AQ RLPPS++Y +GN Y++++
Sbjct: 9 RQERELDPVAMAYRDPAREDFYQKQKDDTIKKKVDFVNTMRS---DKYDIVGHFGPPRKIDTMKH--EYIPARSTH-ILTNLQYED-HINAPLLDDGTYALTKFRPNTVRAKTSIAQS---------REFNVISNEYKVNHDKRRLEDFEKLKTHLLKKYWDNHDYDMIKGRFYSPEKQKLYEEHLETIKSVQGTAQMERLPPSLKYSDGNSYNLLT 209
BLAST of mRNA_S-dermatodea_contig10256.188.1 vs. uniprot
Match: A0A7S4EU07_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4EU07_CHRCT) HSP 1 Score: 65.9 bits (159), Expect = 1.060e-7 Identity = 72/271 (26.57%), Postives = 110/271 (40.59%), Query Frame = 1
Query: 4 DPQTWAQSIQEYQRDKTHLAWNQAELPPPTYVKQYDVSRKSREVD-----PILMRHRDPAVEAQRKHREQERVRVTLNKARNRQLKAEQNYDIVSHTSHSGK---KEPV--------------ARLARHP-DSRTPYDILNHVSREQAH-SLALIYPEGESPEVLPQKSTMLESGKKPHSHKGRDVDVLSNRFLEKHDERMVEEKRFLRERANEVFRRTRDYNPIAGRYYDEAKEQDFVRSREKFGALQGQAQRYRLPPSVRYIEGNDYDI 744
D +W +++ Y + +P Y K V+ + + P+L DPA E K E++ V LN+AR+RQL E YDI++ + KEP A RHP DS P++I++++ Q H S P E ++E H+E+M E+ R+ A + T DY+P+ G+Y D AKEQ + + LQ +LPPS++ EG YDI
Sbjct: 12 DASSWGEALNNYDASRKTRP-----MPDEYYAKPARVTHAMKAAEDVTYHPVLQTFSDPAKETFAKQLEKQAVVSHLNRARDRQLAVESEYDILTMSDKRSTLKAKEPKKTRQPARDKAADYEAPRLRHPLDSAYPFNIVSNIPLTQHHYSAPTQRPSLPESEFRADXXXXXXXXXXXXXXXXXXXXXXXXTYVENHEEKMQRERDINRQTAAFKYWETHDYDPLLGKYVDPAKEQAALDRKAADEKLQPVKAFNQLPPSLQKGEGYVYDI 277 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10256.188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig10256.188.1 >prot_S-dermatodea_contig10256.188.1 ID=prot_S-dermatodea_contig10256.188.1|Name=mRNA_S-dermatodea_contig10256.188.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=210bp MRHRDPAVEAQRKHREQERVRVTLNKARNRQLKAEQNYDIVSHTSHSGKKback to top mRNA from alignment at S-dermatodea_contig10256:1977..6762- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig10256.188.1 ID=mRNA_S-dermatodea_contig10256.188.1|Name=mRNA_S-dermatodea_contig10256.188.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4786bp|location=Sequence derived from alignment at S-dermatodea_contig10256:1977..6762- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig10256:1977..6762- >mRNA_S-dermatodea_contig10256.188.1 ID=mRNA_S-dermatodea_contig10256.188.1|Name=mRNA_S-dermatodea_contig10256.188.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1260bp|location=Sequence derived from alignment at S-dermatodea_contig10256:1977..6762- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |