mRNA_S-dermatodea_contig10255.187.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10255.187.1
Unique NamemRNA_S-dermatodea_contig10255.187.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig10255.187.1 vs. uniprot
Match: D8LQH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQH8_ECTSI)

HSP 1 Score: 335 bits (859), Expect = 1.300e-101
Identity = 212/318 (66.67%), Postives = 224/318 (70.44%), Query Frame = 1 
Query:    1 QSCGQVLDSAWAVILNLLHSVAKGATDAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEDVEGAVGGE--RVATWGGACLPLAFKCLQLIVDDFLERIPLDQVPKLVTCAGAFGGQTESVNLSLTAIGMLWTVCDTFA-DAT----PIPQETPGRGPAAPPA-------------------------------------LGRGRPSLHSIWTSMLLELRSLAVDFRPELRNCAVNTLFSAAVGNGAGLSEEEWKHFLLEVTFPLMEQQVLESTNSASRGANTAVAPELKKGVRMLMHHTRDTDQKQWNETRVLAMQ 822
            QSCGQVLDSAW VILNLL SVAKGAT A XXXXXXXXXXXXXXXXXXX             D E   G    R   WGGACL LAFKCLQL+VDDFLER+P +QVP+LVTCAGAFG QTESVNLSLTAIGMLWTVCDTFA DAT    P P    G     PP+                                       + RPSL S+W +ML +LRSL+VDFRPELRNCAVNTLFSAAVGNG GLSE +WK FL EVTFPL+EQ VLESTNSASRGANTAVAPELKKGVRMLMHHTRDTDQKQWNETRVLAMQ
Sbjct: 1179 QSCGQVLDSAWPVILNLLLSVAKGATSAXXXXXXXXXXXXXXXXXXXXVGDTDNDAAAGEYDDEEDSGAADMRPVVWGGACLSLAFKCLQLVVDDFLERLPREQVPRLVTCAGAFGAQTESVNLSLTAIGMLWTVCDTFAEDATAGGNPAPAAPGGNKDFLPPSGNNVPTGXXXXXXXXXXXXXXXXXXXXXXXHXXXXXXAHKARPSLRSLWPTMLFQLRSLSVDFRPELRNCAVNTLFSAAVGNGDGLSESDWKQFLQEVTFPLIEQ-VLESTNSASRGANTAVAPELKKGVRMLMHHTRDTDQKQWNETRVLAMQ 1495
[Close]
BLAST of mRNA_S-dermatodea_contig10255.187.1 vs. uniprot
Match: A0A6H5KPX0_9PHAE (Mon2_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX0_9PHAE)

HSP 1 Score: 326 bits (835), Expect = 5.550e-99
Identity = 200/310 (64.52%), Postives = 212/310 (68.39%), Query Frame = 1 
Query:   13 QVLDSAWAVILNLLHSVAKGATDAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEDVEGAVGGE--RVATWGGACLPLAFKCLQLIVDDFLERIPLDQVPKLVTCAGAFGGQTESVNLSLTAIGMLWTVCDTFADATPIPQET-----------PGRGPAAP----------PALG-----------------RGRPSLHSIWTSMLLELRSLAVDFRPELRNCAVNTLFSAAVGNGAGLSEEEWKHFLLEVTFPLMEQQVLESTNSASRGANTAVAPELKKGVRMLMHHTRDTDQKQWNETRVLAMQ 822
            QVLDSAW VILNLL SVAKGAT A    XXXXXXXXXXXX                 D E   G    R   WGGACL L+FKCLQL+VDDFLER+P +QVP+LVTCAGAFG QTESVNLSLTAIGMLWTVCDTFADAT                 P  G   P          PAL                  + RPSL S+W +ML +LRSL+VDFRPELRNCAVNTLFSAAVGNG GLSE +WK FL EVTFPL+EQ VLESTNSASRGANTAVAPELKKGVRMLMHHTRDTDQKQWNETRVL MQ
Sbjct:  260 QVLDSAWPVILNLLLSVAKGATSAAPSPXXXXXXXXXXXXAESKGGDTDNDAAAGEYDEEEDSGAAEMRPVVWGGACLSLSFKCLQLVVDDFLERLPREQVPRLVTCAGAFGAQTESVNLSLTAIGMLWTVCDTFADATASGNAALAAPGGNKDVLPPSGNIVPTXXXXXXXXXPALSGPSSSSSGHKASXXXXHKARPSLRSLWPTMLFQLRSLSVDFRPELRNCAVNTLFSAAVGNGDGLSESDWKQFLQEVTFPLIEQ-VLESTNSASRGANTAVAPELKKGVRMLMHHTRDTDQKQWNETRVLMMQ 568
[Close]
BLAST of mRNA_S-dermatodea_contig10255.187.1 vs. uniprot
Match: A0A835YQS4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQS4_9STRA)

HSP 1 Score: 219 bits (558), Expect = 3.070e-61
Identity = 126/273 (46.15%), Postives = 162/273 (59.34%), Query Frame = 1 
Query:    4 SCGQVLDSAWAVILNLLHSVAKGATDAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEDVEGAVGGERVATWGGACLPLAFKCLQLIVDDFLERIPLDQVPKLVTCAGAFGGQTESVNLSLTAIGMLWTVCDTFADATPIPQETPGRGPAAPPALGRGRPSLHSIWTSMLLELRSLAVDFRPELRNCAVNTLFSAAVGNGAGLSEEEWKHFLLEVTFPLMEQQVLESTNSASRGANTAVAPELKKGVRMLMHHTRDTDQKQWNETRVLAMQ 822
            SCGQV+D AW  IL+LL +VA+ +                                  A    G  G  +   WGG+CL LAF  L+LIVDDFL+R+P  +VP LV C G F  Q E+VNLSLTA+GMLWTV D F                    +G+       +W++ML EL  LA D RPE+RNCA+NTLFSA +GNG+  S+++W+ +LLEVTFPL+ + VL  T +AS   +T VAPEL+KGVR +MHH+RDTD+KQW+ET VLAMQ
Sbjct: 1050 SCGQVVDRAWGSILSLLTAVAQASHQL---------------------------HHPGAGSCSGGAGAGQ--QWGGSCLALAFTSLKLIVDDFLDRVPPVEVPTLVRCTGTFAAQVENVNLSLTAVGMLWTVSDAFTSTNTR-------------QVGKV-----DMWSAMLTELSHLAKDQRPEVRNCAINTLFSALIGNGSTFSDQQWQQYLLEVTFPLLGE-VLCCTRAASH--DTGVAPELRKGVRAVMHHSRDTDRKQWSETSVLAMQ 1272
[Close]
BLAST of mRNA_S-dermatodea_contig10255.187.1 vs. uniprot
Match: L8H3Z7_ACACA (Protein MON2 homolog n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H3Z7_ACACA)

HSP 1 Score: 137 bits (345), Expect = 8.560e-33
Identity = 74/203 (36.45%), Postives = 112/203 (55.17%), Query Frame = 1 
Query:  238 LPLAFKCLQLIVDDFLERIPLDQVPKLVTCAGAFGGQTESVNLSLTAIGMLWTVCDTFADATPIPQETPGRGPAAPPALGRGRPSLHS-----IWTSMLLELRSLAVDFRPELRNCAVNTLFSAAVGNGAGLSEEEWKHFLLEVTFPLMEQQVLESTNSASRGANTAVAPELKKGVRMLMHHTRDTDQKQWNETRVLAMQVCV 831
            + +AF+CL  I  DFL  +P++ V K++   G FG QT  +N+SLTA+G+LW + D  A      ++           L  G   + S     +W S   EL+ L VD R E+RNCA+ TLF     +G+ L  + W   + ++ FPLM +    S ++     +T +  E  K V M++HHTR+T++KQWNET+VLA+Q  V
Sbjct: 1005 IQVAFRCLGFICSDFLTNLPIECVEKVIVAIGKFGRQTAFMNISLTAVGLLWNISDFLATEIKALRKQLAEAVEKEAELILGSWLMDSTTSNKLWLSTYHELKQLCVDARTEVRNCAIQTLFKTLSTHGSLLEHDIWPSVIAQILFPLMNEIRNLSASAGKNRIDTELGKEGGKSVIMMVHHTRNTEEKQWNETQVLALQGIV 1207
[Close]
BLAST of mRNA_S-dermatodea_contig10255.187.1 vs. uniprot
Match: A0A7S0T4S2_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0T4S2_9CHLO)

HSP 1 Score: 128 bits (321), Expect = 5.450e-31
Identity = 73/194 (37.63%), Postives = 106/194 (54.64%), Query Frame = 1 
Query:  244 LAFKCLQLIVDDFLERIPLDQVPKLVTCAGAFGGQTESVNLSLTAIGMLWTVCDTFADATPIPQETPGRGPAAPPALGRGRPSLHSIWTSMLLELRSLAVDFRPELRNCAVNTLFSAAVGNGAGLSEEEWKHFLLEVTFPLMEQ--QVLESTNSASRGANTAVAPELKKGVRMLMHHTRDTDQKQWNETRVLAM 819
            +AF C+ +I  D L  IP   +P++VT  GAFG Q   VN SLTAIG+LW + D F        E  GR        G       ++   +   LR ++ D RPE+RN  V TL S  V +G  L+   W+  L +V FPL+E+  Q+  + ++  +GA   V  +  + V ML+HH+R+T QKQW+ET VL++
Sbjct:   46 VAFACISVIAADLLPYIPDAALPEVVTAVGAFGRQRADVNTSLTAIGLLWNMTDFFGRLVDALPEERGRTIDLADT-GTAAGMAETVMLPLFGVLRDISTDARPEVRNSGVRTLISTLVSHGGKLAPSTWRTCLWDVLFPLLERVRQLAGAASTEEKGAEREVGRQQGRAVMMLVHHSRNTAQKQWDETLVLSL 238
[Close]
BLAST of mRNA_S-dermatodea_contig10255.187.1 vs. uniprot
Match: A0A4D9CR02_9STRA (Protein MON2 homolog n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CR02_9STRA)

HSP 1 Score: 129 bits (324), Expect = 5.480e-30
Identity = 97/312 (31.09%), Postives = 136/312 (43.59%), Query Frame = 1 
Query:    1 QSCGQVLDSAWAVILNLLHSVAKGATDAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEDVEGA--VGGERVATWGGACLPLAFKCLQLIVDDFLERIPLDQVPKLVTCAGAFGGQTESVNLSLTAIGMLWTVCDTFADATPIPQETPGRGPAAPPALGRGRPSLHS-IWTSMLLELRS-LAVDFRPELRNCAVNTLFSAAVGNGAGLSEEEWKHFLLEVTFPLM----------------EQQVLESTNSASRGANTAVAPELKKGV------------------RMLMHHTRDTDQKQWNETRVLAMQ 822
            QS G +LDS W+ + N+L +V                                      A+  EG   V     + WG +CLP AF+ L+LIVDD LE +P    P  V C G F  Q   VN+SL A+GM+WTV D F     + +    +  A+    G     L   IW+++L EL S LA+D RPE+RNCAVNT F+  V +G     + W    +E    L+                E+  LE      +G     A   ++G                   R+++HH+RDT  KQW+ETRVL++Q
Sbjct: 1104 QSSGHILDSGWSEVFNILGAVVSRRQGEKEQSPRPTRFPDGSCQRTSFETPQNPSSSFLAQYTEGRDNVSDSTQSFWGESCLPAAFRSLKLIVDDNLEHVPPAYFPWCVACIGGFAAQPYDVNMSLAAMGMVWTVAD-FVSRLGLREVVVAQRTASGEEDGGLEDGLMDVIWSTILEELGSRLALDPRPEVRNCAVNTFFACFVRHGLAFPRQGWPR-RVESMAALVGAIEERASRSNAVDEGEETRLEQVGEKQQGTGMVDARTSEEGAESGGVGGTGGNAAIRGAPRVILHHSRDTAPKQWSETRVLSLQ 1413
[Close]
BLAST of mRNA_S-dermatodea_contig10255.187.1 vs. uniprot
Match: A0A0T6AXK1_9SCAR (Protein MON2 homolog (Fragment) n=1 Tax=Oryctes borbonicus TaxID=1629725 RepID=A0A0T6AXK1_9SCAR)

HSP 1 Score: 127 bits (319), Expect = 2.360e-29
Identity = 73/201 (36.32%), Postives = 107/201 (53.23%), Query Frame = 1 
Query:  223 WGGACLPLAFKCLQLIVDDFLERIPLDQVPKLVTCAGAFGGQTESVNLSLTAIGMLWTVCDTF-ADATPIPQETPGRGPAAPPALGR-GRPSLHSIWTSMLLELRSLAVDFRPELRNCAVNTLFSAAVGNGAGLSEEEWKHFLLEVTFPLMEQQVLESTNSASRGANTAVAPELKKGVRMLMHHTRDTDQKQWNETRVLAM 819
            +G   + +AF+CLQL++ DFL  +P   +P  V     FG QT+ +N+SLTA+G++W + D F  +   + Q     G   P   G    PS   +W  +   L  L VD RP +R  A  TLFS    +G  L +  W+  L +V FPL+E+    S N++S   +T        G  +L+HHTR+T QKQW ET+VL +
Sbjct:  688 YGENLIRIAFQCLQLVITDFLPVMPWRCLPLCVNTVAKFGSQTQELNISLTAVGLMWNISDYFYQNQAKLSQTLTEDGTILPEFPGTINMPSFDKLWMCLYARLGELCVDPRPAVRKSAGQTLFSTISAHGNLLKQSTWQAVLWQVLFPLLEKVGTLSNNASSEKVDT--------GGNILIHHTRNTAQKQWAETQVLTL 880
[Close]
BLAST of mRNA_S-dermatodea_contig10255.187.1 vs. uniprot
Match: N6TSW3_DENPD (Protein MON2 homolog (Fragment) n=3 Tax=Dendroctonus ponderosae TaxID=77166 RepID=N6TSW3_DENPD)

HSP 1 Score: 126 bits (316), Expect = 6.070e-29
Identity = 71/210 (33.81%), Postives = 111/210 (52.86%), Query Frame = 1 
Query:  226 GGACLPLAFKCLQLIVDDFLERIPLDQVPKLVTCAGAFGGQTESVNLSLTAIGMLWTVCDTFA------------DATPIPQETPGRGPAAPPALGRGRPSLHSIWTSMLLELRSLAVDFRPELRNCAVNTLFSAAVGNGAGLSEEEWKHFLLEVTFPLMEQQVLESTNSASRGANTAVAPELKKGVRMLMHHTRDTDQKQWNETRVLAM 819
            G   + +AF+CLQL++ DFL  +P   +P+ V     FG QT+ +N+SLT++G++W +CD F             DAT +P + PG             PS   +W  +   L  L VD RP +R  A  TLFS    +G  L +  W+  + +V FPL+++          R +N+A + ++  G  +L+HH+R+T QKQW ET+VL +
Sbjct:  908 GENLIRIAFQCLQLVITDFLPVMPWRCLPQCVDTVAKFGSQTQELNISLTSVGLMWNICDYFHQNQGKLSQTLIDDATVLP-DFPGT---------LDMPSFDKLWMCLYARLGELCVDSRPAVRKSAGQTLFSTISAHGGLLKQTTWQVMIWQVLFPLLDK--------VKRLSNSASSEKVDAGGNILIHHSRNTAQKQWAETQVLTL 1099
[Close]
BLAST of mRNA_S-dermatodea_contig10255.187.1 vs. uniprot
Match: A0A553PCB9_TIGCA (Protein MON2 homolog n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553PCB9_TIGCA)

HSP 1 Score: 126 bits (316), Expect = 6.120e-29
Identity = 70/198 (35.35%), Postives = 108/198 (54.55%), Query Frame = 1 
Query:  247 AFKCLQLIVDDFLERIPLDQVPKLVTCAGAFGGQTESVNLSLTAIGMLWTVCDTFADATPIPQE--TPGRGPAAPPALG-RGRPSLHSIWTSMLLELRSLAVDFRPELRNCAVNTLFSAAVGNGAGLSEEEWKHFLLEVTFPLMEQQVLESTNSASRGANTAVAPELKKGVRMLMHHTRDTDQKQWNETRVLAMQVCV 831
            AF+CLQLI  DFL  IP    P+ V CA  FG Q   +N+SLTA+G+LW + D F     + +     G     P   G +  PSL  +W  +  +L+ L +D RP +R  +  TLFS    +G+ L    W+  L +V FPL++  +++S N++S         ++ +   +++HH+R+T QKQW ET+VL +   V
Sbjct:  924 AFQCLQLIFADFLPTIPYRCYPQCVDCATTFGSQITELNVSLTAVGLLWNLSDYFYQNVKMLRSLSVEGENKIFPDFPGCKNIPSLDKLWMCLFYKLKDLCLDSRPAVRKSSGQTLFSTIAAHGSVLDGNTWQAVLWQVLFPLLDNVIIQSDNASSE--------KVSQSHVIMIHHSRNTAQKQWAETKVLTISGVV 1113
[Close]
BLAST of mRNA_S-dermatodea_contig10255.187.1 vs. uniprot
Match: UPI0008F997F6 (protein MON2 homolog isoform X1 n=2 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F997F6)

HSP 1 Score: 124 bits (310), Expect = 3.790e-28
Identity = 73/193 (37.82%), Postives = 105/193 (54.40%), Query Frame = 1 
Query:  247 AFKCLQLIVDDFLERIPLDQVPKLVTCAGAFGGQTESVNLSLTAIGMLWTVCDTF-ADATPIPQETPGRGPAAPPALG-RGRPSLHSIWTSMLLELRSLAVDFRPELRNCAVNTLFSAAVGNGAGLSEEEWKHFLLEVTFPLMEQQVLESTNSASRGANTAVAPELKKGVRMLMHHTRDTDQKQWNETRVLAM 819
            AF+CLQL+V DFL  +P   +P  +     FG QT+ +N+SLTAIG++W + D F  +   + Q      P  P   G +  P    +W  +   L  L VD RP +R  A  TLFS    +GA L+   W   L +V FPL++Q V   +NSAS       + ++  G  +L+HH+R+T QKQW ET+VL +
Sbjct:  913 AFQCLQLVVTDFLPLMPWRCLPLCLETTSIFGSQTQELNISLTAIGLMWNISDYFFQNQEKLSQSLSNDPPVFPDFPGCQDMPPFDKLWMCLFTRLGKLCVDPRPAVRKSAGQTLFSTIYAHGALLNHATWHSVLWQVLFPLLDQ-VRNLSNSAS-------SEKVDTGGNILIHHSRNTAQKQWAETQVLTL 1097
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10255.187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQH8_ECTSI1.300e-10166.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPX0_9PHAE5.550e-9964.52Mon2_C domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835YQS4_9STRA3.070e-6146.15Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
L8H3Z7_ACACA8.560e-3336.45Protein MON2 homolog n=1 Tax=Acanthamoeba castella... [more]
A0A7S0T4S2_9CHLO5.450e-3137.63Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
A0A4D9CR02_9STRA5.480e-3031.09Protein MON2 homolog n=1 Tax=Nannochloropsis salin... [more]
A0A0T6AXK1_9SCAR2.360e-2936.32Protein MON2 homolog (Fragment) n=1 Tax=Oryctes bo... [more]
N6TSW3_DENPD6.070e-2933.81Protein MON2 homolog (Fragment) n=3 Tax=Dendrocton... [more]
A0A553PCB9_TIGCA6.120e-2935.35Protein MON2 homolog n=1 Tax=Tigriopus californicu... [more]
UPI0008F997F63.790e-2837.82protein MON2 homolog isoform X1 n=2 Tax=Bemisia ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10255contigS-dermatodea_contig10255:2499..7478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score339.7
Seed ortholog evalue1.3e-90
Seed eggNOG ortholog2880.D8LQH8
KEGG koko:K18466
KEGG Pathwayko04144,map04144
EggNOG free text desc.protein transport
EggNOG OGsKOG1848@1,KOG1848@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionArmadillo-like helical
Ec32 orthologEc-10_005690.1
Exons5
Model size834
Cds size834
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10255.187.1prot_S-dermatodea_contig10255.187.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10255 2499..7478 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924147.8862805-CDS-S-dermatodea_contig10255:2498..28041622924147.8862805-CDS-S-dermatodea_contig10255:2498..2804Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10255 2499..2804 +
1694079050.3586574-CDS-S-dermatodea_contig10255:2498..28041694079050.3586574-CDS-S-dermatodea_contig10255:2498..2804Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10255 2499..2804 +
1622924147.8953376-CDS-S-dermatodea_contig10255:3517..35931622924147.8953376-CDS-S-dermatodea_contig10255:3517..3593Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10255 3518..3593 +
1694079050.3706918-CDS-S-dermatodea_contig10255:3517..35931694079050.3706918-CDS-S-dermatodea_contig10255:3517..3593Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10255 3518..3593 +
1622924147.9035351-CDS-S-dermatodea_contig10255:4000..41761622924147.9035351-CDS-S-dermatodea_contig10255:4000..4176Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10255 4001..4176 +
1694079050.3839955-CDS-S-dermatodea_contig10255:4000..41761694079050.3839955-CDS-S-dermatodea_contig10255:4000..4176Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10255 4001..4176 +
1622924147.913661-CDS-S-dermatodea_contig10255:6299..64161622924147.913661-CDS-S-dermatodea_contig10255:6299..6416Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10255 6300..6416 +
1694079050.392011-CDS-S-dermatodea_contig10255:6299..64161694079050.392011-CDS-S-dermatodea_contig10255:6299..6416Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10255 6300..6416 +
1622924147.928782-CDS-S-dermatodea_contig10255:7319..74781622924147.928782-CDS-S-dermatodea_contig10255:7319..7478Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10255 7320..7478 +
1694079050.4000497-CDS-S-dermatodea_contig10255:7319..74781694079050.4000497-CDS-S-dermatodea_contig10255:7319..7478Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10255 7320..7478 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10255.187.1

>prot_S-dermatodea_contig10255.187.1 ID=prot_S-dermatodea_contig10255.187.1|Name=mRNA_S-dermatodea_contig10255.187.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=278bp
QSCGQVLDSAWAVILNLLHSVAKGATDAPPPPASTPPRDREAVGGGGTGG
AAAAAVDDDAEDVEGAVGGERVATWGGACLPLAFKCLQLIVDDFLERIPL
DQVPKLVTCAGAFGGQTESVNLSLTAIGMLWTVCDTFADATPIPQETPGR
GPAAPPALGRGRPSLHSIWTSMLLELRSLAVDFRPELRNCAVNTLFSAAV
GNGAGLSEEEWKHFLLEVTFPLMEQQVLESTNSASRGANTAVAPELKKGV
RMLMHHTRDTDQKQWNETRVLAMQVCV*
back to top

mRNA from alignment at S-dermatodea_contig10255:2499..7478+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10255.187.1 ID=mRNA_S-dermatodea_contig10255.187.1|Name=mRNA_S-dermatodea_contig10255.187.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4980bp|location=Sequence derived from alignment at S-dermatodea_contig10255:2499..7478+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGTCCTGCGGACAAGTGCTGGATTCCGCTTGGGCGGTGATCCTCAACCT
TCTACATTCCGTCGCCAAGGGGGCGACTGACGCCCCTCCCCCCCCGGCGA
GCACGCCTCCTCGAGATAGGGAGGCGGTAGGAGGGGGGGGGACGGGGGGC
GCGGCGGCGGCAGCGGTGGATGATGACGCGGAAGATGTGGAGGGCGCTGT
CGGAGGGGAGAGGGTGGCTACGTGGGGCGGCGCTTGTCTGCCCCTGGCGT
TCAAGTGCCTGCAGCTCATCGTGGACGACTTCTTGGAACGGATTCCCCTC
GATCAGGTTTGTTGTTGTTGTTTTTTTTACGAGTATCGGCGCGTGTTTTT
TTGTGGCTTCTGCTACGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTNNNNNNNNNNCCCCCTCCCCGACGGGTATTGC
CCCCCACCTCATCCTTAACCCAACCCTATCCCCATCCCCGCTATTTTAAT
CATTCGTGTGGTTTTCCGACCCGGTTAGCCCACGAAAGCAGAAAAGGAAC
CGATGCGGTACTTGTACGATTGGTACAACGGGCTCAAGCATCAGATCCGC
GACGTGGAAGGCTTGCTGGTTTCACATCGACAACAGGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGCTGCTACGTGTGTGTGTTTCGTTAATTTTGCTATTATAGTTTCAATG
TTTGTGTTTTTTTAACCTCTCCAGGTACCGCACGGCCGCGAGGTCCCAAG
GTTTGTTTTGGCTCTTCCCGTCTCCCCCCCCCCCCCTCGTCAGGCCTGCG
GAAGCTGTAGCGCGTCGAATCGAGTCGAATCGAGTATTCCCCATTGTCGC
CGTATATCGCTTGACAACGGTGTGATCCTTCCTGCATACCGCCGCTAAGC
CACACGCCGTAACACCTCTGTTGTGTTGTGTTATGATGTGTTGCCTTGTG
TTGTGTTGTGTGGCTTCAGGTGCCAAAGCTGGTGACGTGCGCGGGTGCCT
TCGGGGGGCAGACGGAAAGCGTCAACCTTAGCCTAACCGCCATCGGTAAG
TGCCTTGTAACTGTTTTGTTTGTGTTTGTGGCTCATGTACGATTGATGGC
CCTTGTCCTAATCATTCGCGTCTGTAGTCACGAGGGATCGGTCTTATTGT
AACATCCCAACAATAAACAATTCTTGATGCCAGATTGTGAAGCCACGATT
GTACCTGATTTTAGGGAAGAGCACCTTCGCCAAACGCCACACCTCACGGG
CGTAGCCGTGGCTACTTACTATTCATATAGTAGTTCATATAATATACTAG
TAATAGTATCGTCGAAGACGCCTCCAAGGAAGAGCCAACTCACAACATCG
CTCAAGACACACACACGCCACGCCGCTCACCCCGAGTCAACGCGCACAGC
ATTGTTTTTGACGTGTGCCCCCCGAACATTACTGCCCCCCTCTGCAATGC
AGGTATGCTGTGGACGGTGTGTGACACCTTCGCAGACGCCACCCCCATTC
CACAGGAAACCCCGGGGAGGGGTCCTGCGGCGCCTCCCGCCCTTGGCCGC
GGCCGCCCGTCGCTGCACTCGATATGGACCAGCATGCTCTTGGAGCTCAG
GAGCCTTGCCGTTGACTTCAGGCCTGAGGTGGGGCGCGTGGCACGTCTTG
TTGTTGCTTTCGTTGTGATCACTATACTTTATTTTATTTTGCTTTCCCCA
CCCCCCCCCCCTAAAAAAATATAGATTTCAGAAACATAGAGCGAGTGTTC
GGGTCCCACCTTTTCAAGAGGGAAGATACCCCCCCCCCCCCCTCCCAAAA
GAAAGCTTCAGCCGTGGTCATGCGATCGGACACATGAAGGAAGACAGAGG
AAGATACAGGCGGAAAAGAGAAGACTGCGCGAAGCAAAACGGAGGCATTC
TCTGAATGCTACATGGGGGGAGGGGGAGGGGGAGGGGGGGGTAGCCGTGG
TCACCCGATCGGACACATAAAATAAAAATAAAATAAAGCAGATACAGGCG
GCAAGGACTCCCCAAAACACAACGGAAACACTTGCTGGGTGCTTGCTACG
AGGGGGGCGGGGGGGGTGTACTTACGTTAAACGCATGTCGTATCCATACG
GACATAGACCACGCGTCACAACAATGCCGGGACGGAGCGATATGCCGAGT
TTTCGCCGGCCAGGCTGCGTTTCACGAGGATGATACTGTACCAGCTGCTG
GTCATCGCCCTTGCGTTTGCGACGCCAACCGATATGCCATGGGTTGATTG
GACATACCGGGCAACCAAATGTTACACATTCAGTAGGCGTGACTAGGGGG
TATTTATGTAAAACGCATGTCGTATCTAAACAGACATAAGACCACGTTCG
CAGCAATACCGAGACGGAACGGTATGTCGGGTTTTCGCCGGCCAGGCTGC
AGTTCGCAAGAATGATACCAGCTGCTAGCCATGATCCTTGCGTTTGCGAT
GCCATCTAAAACAAGCGGGGGGGGGGGCGCTGTGAAAGTGAAGACGAGTG
GCGAAGAGTAGGAAGTTGGTGATACGAGTTTTTTAAAAGCGGCCGCGAAA
AAAAGAAAAACAAGTTTTTGTTCTTTGCTTCCGTATCTTTGGTCATTCAT
GTGTAATCACTCCCCAACGGGGGGAAGTGGAAACCTCGTGGAGGCGTCTC
CCCCAAATTCACGACATGGCAACAGGCAGTCGGGAACCGCCAACTAGCGG
CAAACAGCCAGCCTACTACACCATACCCTCTGAATCCCCCGAAAGCAAAA
GGGAGGGAGGGAGGGAGGGAGACCAACAGCTGCAGTAGTCCTGGTCACTA
TTTATAGACTAGACAGCAGTTGTTGTTGTTCGACCGGCTGTCCTTCCAAC
TATTCACTATAATAGCCGTCGGCGTTGTGCACTATTAATAGCCTGAGCTA
GCTCTACTGCGACACGAGTGAAGACTGACAGAGGTAACGGTAACTATCAT
ACGCCTTCTAGAGTATGGAGGCAATGCATCCATCCGTAATATTCTCCGAA
CATTCTCCGAACGTTTCTCCGACTCGACCGATTCTCTGAGCATGCAACAG
ACCGATACTCTCGCTCGTATCGTACAGAAAAAAAAACAAAAAAAAAACAG
ATTCCTCTTCTGGAATGCTCCGCGCCTGTTTCGAAAAACACTCATGTCCA
CCCCTGATGTTTGTCAAAATTTGGTAAGGCCAGGAGCTGTGATAGAGTAG
CACCGTATATTGTTGTTGTACGTAGATGAGCCGGTCGGCTATCCGTGTGA
ACAAATAAAGCAAAACAGAGTAGATGTTTTATTTTTCAGCTGTGGGGCCT
AAGAAACGGGGCTTTGAACGTGTGCTGTTTTTTTTTTTTTTTCCTTTTTC
TTTTTTAGCAGGCCCCAAGTTCCGAGGCATGCCCTCTCTGTTTCCGAGAG
TTAGTTTTATGTCAATTCCTTCTTTGTATGTACGTTTTTAGGCCATTTCG
TTGGGTTTTATGGGCCAAGCTATAACCCAGTAGAGGTCTACGTTATATAC
AAGTATGACGCTGTGGGATCATTGTAGAAGTGTTGCTATCTGGGTAGGGG
TATGGCACTACAGTACAATAATAGTACAATTCAAACTTAATTCTGTTAAA
ACGTACCAGTGGTAACTCTGGGAATGGAGTGTTTCCTAACCCCCCCCCCC
CCCCCCCCCCCCACTTCCTTCTTGCAACGATAAATGGCTCCTGCCTTGCC
GGCGGCGGCTGTCGTCGTCGTGGGTGGTGACGTGGCGTTTTTGAACCGTA
GCTTCGAAACTGCGCGGTCAACACGCTATTCTCGGCGGCGGTGGGCAACG
GGGCCGGTCTCAGCGAGGAGGAGTGGAAGCACTTTCTGCTCGAGGTCACC
TTTCCGCTCATGGAGCAGGTCGGTCGGTTGGTCGTTGCTAGTCGTTGGTC
GTTACGAACCGGAACATTCGTTTTTGCGGTTTCACGAAGAAAAACAAAAC
GAAGAACGTCTGCCAGGCGTGTAGGCAACGGGGCCATCCTTTAGCTATTT
ATGTTAATAGGAGGAGTGGAATTTTTTTCTGCTCGAGATCAACTCTCCGC
TCATTGAGCAGGTCGGTCGGTCGGTTGGTTGGTTGGCCGTTATTTTTTTT
GTTGTTACGAACCGGAACATTCGTTTTTTACCATTTCACAAAAAACGCTA
AGGGCAAATACCGTATGCTATCACAGGCGTAGGCAACGGGGGCGCCTTAG
CGAGGAATGGAAACGGTTTCTGCTCGAGGTCACCTTTCCACCCATGGAGC
ACGTCGATCGGCTGATCCTTGGTCCTTAGTCTTCGACCTTGGTCGTTGCG
AACCGGAACATTCGTTTGCCGTTTCGCAAAAACACACTGAAACTGTAGCG
TAACTGACGGCTCAATCCTGCTATTGTTTCACCTTGTGGGTGGAATACAC
TGGTCTTACGAGAGGCGACCACCGACCAGCTGGATTGCCGCGGTCAACTA
CACGCAGCTCATGACCGGCGCGTATCATAACTCCCATATTAATTGATAGT
GGCTCGCCTTGCTCTTGAAGTTACCAGAGCTTGCAGGATACCCTCCCAGC
GATGGGGCGGGCGAGCCGCGTTTGTTTTTGTTGCCAAAACACGTCGTGCC
TGGGAAGGGCGCTTGACCTAGAAAGTTCGCGGTATTTGTTGATTAAGTAT
TACGTGGTTGGATCAAGTCGATCGGTTATCTACACCCACCTGTGAAAATC
AACAAAAAAATACGTAAAAAAACATGCGGTATTTATTGATTAAAAGTAAA
AAACCTGGCGTTGCGGCAAAGCAGGTCCTGGAGAGCACTAACAGCGCGAG
CAGAGGGGCCAACACCGCGGTCGCCCCGGAGCTGAAGAAGGGTGTCCGGA
TGCTGATGCACCACACGAGGGACACCGACCAGAAGCAATGGAACGAGACG
AGGGTGTTGGCGATGCAGGTTTGTGTATAG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig10255:2499..7478+

>mRNA_S-dermatodea_contig10255.187.1 ID=mRNA_S-dermatodea_contig10255.187.1|Name=mRNA_S-dermatodea_contig10255.187.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1668bp|location=Sequence derived from alignment at S-dermatodea_contig10255:2499..7478+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGTCCTGCGGACAAGTGCTGGATTCCGCTTGGGCGGTGATCCTCAACCT
TCTACATTCCGTCGCCAAGGGGGCGACTGACGCCCCTCCCCCCCCGGCGA
GCACGCCTCCTCGAGATAGGGAGGCGGTAGGAGGGGGGGGGACGGGGGGC
GCGGCGGCGGCAGCGGTGGATGATGACGCGGAAGATGTGGAGGGCGCTGT
CGGAGGGGAGAGGGTGGCTACGTGGGGCGGCGCTTGTCTGCCCCTGGCGT
TCAAGTGCCTGCAGCTCATCGTGGACGACTTCTTGGAACGGATTCCCCTC
GATCAGCAGTCCTGCGGACAAGTGCTGGATTCCGCTTGGGCGGTGATCCT
CAACCTTCTACATTCCGTCGCCAAGGGGGCGACTGACGCCCCTCCCCCCC
CGGCGAGCACGCCTCCTCGAGATAGGGAGGCGGTAGGAGGGGGGGGGACG
GGGGGCGCGGCGGCGGCAGCGGTGGATGATGACGCGGAAGATGTGGAGGG
CGCTGTCGGAGGGGAGAGGGTGGCTACGTGGGGCGGCGCTTGTCTGCCCC
TGGCGTTCAAGTGCCTGCAGCTCATCGTGGACGACTTCTTGGAACGGATT
CCCCTCGATCAGGTGCCAAAGCTGGTGACGTGCGCGGGTGCCTTCGGGGG
GCAGACGGAAAGCGTCAACCTTAGCCTAACCGCCATCGGTGCCAAAGCTG
GTGACGTGCGCGGGTGCCTTCGGGGGGCAGACGGAAAGCGTCAACCTTAG
CCTAACCGCCATCGGTATGCTGTGGACGGTGTGTGACACCTTCGCAGACG
CCACCCCCATTCCACAGGAAACCCCGGGGAGGGGTCCTGCGGCGCCTCCC
GCCCTTGGCCGCGGCCGCCCGTCGCTGCACTCGATATGGACCAGCATGCT
CTTGGAGCTCAGGAGCCTTGCCGTTGACTTCAGGCCTGAGGTATGCTGTG
GACGGTGTGTGACACCTTCGCAGACGCCACCCCCATTCCACAGGAAACCC
CGGGGAGGGGTCCTGCGGCGCCTCCCGCCCTTGGCCGCGGCCGCCCGTCG
CTGCACTCGATATGGACCAGCATGCTCTTGGAGCTCAGGAGCCTTGCCGT
TGACTTCAGGCCTGAGCTTCGAAACTGCGCGGTCAACACGCTATTCTCGG
CGGCGGTGGGCAACGGGGCCGGTCTCAGCGAGGAGGAGTGGAAGCACTTT
CTGCTCGAGGTCACCTTTCCGCTCATGGAGCAGCTTCGAAACTGCGCGGT
CAACACGCTATTCTCGGCGGCGGTGGGCAACGGGGCCGGTCTCAGCGAGG
AGGAGTGGAAGCACTTTCTGCTCGAGGTCACCTTTCCGCTCATGGAGCAG
CAGGTCCTGGAGAGCACTAACAGCGCGAGCAGAGGGGCCAACACCGCGGT
CGCCCCGGAGCTGAAGAAGGGTGTCCGGATGCTGATGCACCACACGAGGG
ACACCGACCAGAAGCAATGGAACGAGACGAGGGTGTTGGCGATGCAGGTT
TGTGTATAGCAGGTCCTGGAGAGCACTAACAGCGCGAGCAGAGGGGCCAA
CACCGCGGTCGCCCCGGAGCTGAAGAAGGGTGTCCGGATGCTGATGCACC
ACACGAGGGACACCGACCAGAAGCAATGGAACGAGACGAGGGTGTTGGCG
ATGCAGGTTTGTGTATAG
back to top