mRNA_S-dermatodea_contig10254.186.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10254.186.1
Unique NamemRNA_S-dermatodea_contig10254.186.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10254.186.1 vs. uniprot
Match: A0A6H5JRH9_9PHAE (Peptide-methionine (S)-S-oxide reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRH9_9PHAE)

HSP 1 Score: 280 bits (717), Expect = 5.160e-89
Identity = 159/252 (63.10%), Postives = 187/252 (74.21%), Query Frame = 3 
Query:  111 TTRAIMLSAALATSARQGGGATAF-VQSPLVSRRASGPSAFTGKAV--SPASRSSNSPAFASANTGR---NPMGMMFSNMFKKKEMNYGELDGAAAEAAQAALSGEVPSKSKAGDDIATFAGGCFWGLELAFQRVPGVVATSAGYTQGSYQQPSYSEVCSGASGHTEAIQVYYNPSEVSFDELLAVFFGRIDPTELNYQGGDEGPQYRTGVYYHTKAQEATARKVFAEEQKKIDRPIVTECMESAIYWPAEV 848
            T+R  MLSAALA S R   G +AF V   L    A+G S+F GKA+  + A RSS   AF  A+  R   N MGMMFSN FKKKE+NY EL+G AAEAA+AAL GEVPSKS+AG DIATFAGGCFWGLELAFQRVPGVVATS GYTQG+ ++P+Y EVCSG++GHTEA+QVYYNPSEVSF+EL  VFFGRI+PT++N QG D G QYRTG+Y HTK Q   A KV  E +    +PI TE   + +YWPAE+
Sbjct:    4 TSRVFMLSAALAASTRGRNGVSAFAVLGRLRPSSAAGASSFAGKALPAAVAPRSSPVAAFTCADGSRGSRNSMGMMFSNPFKKKEVNYEELEGGAAEAARAALKGEVPSKSEAGHDIATFAGGCFWGLELAFQRVPGVVATSVGYTQGAVEKPTYGEVCSGSTGHTEAVQVYYNPSEVSFEELCGVFFGRINPTQVNGQGADRGTQYRTGIYPHTKEQSDVALKVMDELRGNYKQPIATEIEGAKVYWPAEL 255
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BLAST of mRNA_S-dermatodea_contig10254.186.1 vs. uniprot
Match: A0A6T5PGW5_HETAK (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5PGW5_HETAK)

HSP 1 Score: 213 bits (543), Expect = 5.770e-63
Identity = 106/164 (64.63%), Postives = 125/164 (76.22%), Query Frame = 3 
Query:  354 YGELDGAAAEAAQAALSGEVPSKSKAGDDIATFAGGCFWGLELAFQRVPGVVATSAGYTQGSYQQPSYSEVCSGASGHTEAIQVYYNPSEVSFDELLAVFFGRIDPTELNYQGGDEGPQYRTGVYYHTKAQEATARKVFAEEQKKIDRPIVTECMESAIYWPAE 845
            YG L+GAA E  +AA++GEVP+ SKAG  IATFAGGCFWGLELAFQRVPGVV TS GYTQG+ ++P+YS VCSGA+GHTEA+QVYYNP EVSF +L  VFF R +PT +N QG D G QYRTGVY HT  Q   A+ VF E + K  +PI TE   + +YWPAE
Sbjct:   88 YGVLEGAAREQGEAAIAGEVPATSKAGHAIATFAGGCFWGLELAFQRVPGVVETSVGYTQGAQERPTYSGVCSGATGHTEAVQVYYNPEEVSFTQLCNVFFERTNPTTVNGQGNDFGTQYRTGVYTHTDQQMIEAQAVFTELKGKYSKPIATELKPAQVYWPAE 251
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BLAST of mRNA_S-dermatodea_contig10254.186.1 vs. uniprot
Match: A0A835Z6G6_9STRA (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6G6_9STRA)

HSP 1 Score: 213 bits (541), Expect = 8.210e-63
Identity = 105/180 (58.33%), Postives = 134/180 (74.44%), Query Frame = 3 
Query:  306 PMGMMFSNMFKKKEMNYGELDGAAAEAAQAALSGEVPSKSKAGDDIATFAGGCFWGLELAFQRVPGVVATSAGYTQGSYQQPSYSEVCSGASGHTEAIQVYYNPSEVSFDELLAVFFGRIDPTELNYQGGDEGPQYRTGVYYHTKAQEATARKVFAEEQKKIDRPIVTECMESAIYWPAE 845
            P+ M+F   F KK M+Y  L G+AAEAA+AAL  +VP+KS+ G DIATFAGGCFWG EL FQRVPGV++T  GYTQG   QPSY +VCSG++GHTE  QVYY+P +VS+  L+  FF R+DPT++N QG D G QYR+GVY+HT  QEA A++VF    K+  RPI TE   +A+++PAE
Sbjct:   62 PVRMLFG-AFGKKTMDYTGLQGSAAEAAKAALDKKVPAKSEEGWDIATFAGGCFWGSELQFQRVPGVISTHVGYTQGKVDQPSYDDVCSGSTGHTEGFQVYYDPKQVSYKTLVEEFFSRVDPTQVNGQGNDRGTQYRSGVYFHTPEQEAAAKEVFERLAKENSRPIATELKAAAVFYPAE 240
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BLAST of mRNA_S-dermatodea_contig10254.186.1 vs. uniprot
Match: K8Z531_NANGC (Peptide-methionine (S)-S-oxide reductase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z531_NANGC)

HSP 1 Score: 202 bits (513), Expect = 1.340e-59
Identity = 101/165 (61.21%), Postives = 122/165 (73.94%), Query Frame = 3 
Query:  354 YGELDGAAAEAAQAALSGEVPSKSKAGDDIATFAGGCFWGLELAFQRVPGVVATSAGYTQGSYQQPSYSEVCSGASGHTEAIQVYYNPSEVSFDELLAVFFGRIDPTELNYQGGDEGPQYRTGVYYHTKAQEATARKVFAEEQKKIDRPIVTECMESAIYWPAEV 848
            Y +L G A EA++AAL+  VP+ S  G  IATFAGGCFWG+ELAFQRVPGVVAT  GYTQG   +PSY EVCSG +GHTEAIQV++ P+EVS+++LL VF+ RIDP   N QGGD G QYRTG+Y HT AQ   A +    EQKK  RPI+TE   + ++WPAEV
Sbjct:    6 YQQLSGLALEASKAALADSVPALSVDGHSIATFAGGCFWGIELAFQRVPGVVATGTGYTQGHVAEPSYQEVCSGTTGHTEAIQVHFKPNEVSYEDLLKVFWERIDPLMENGQGGDRGTQYRTGIYTHTDAQHRAALQSREIEQKKYSRPIMTEIKPAKVFWPAEV 170
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BLAST of mRNA_S-dermatodea_contig10254.186.1 vs. uniprot
Match: A0A7S2RMP4_9STRA (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RMP4_9STRA)

HSP 1 Score: 196 bits (497), Expect = 6.750e-56
Identity = 102/187 (54.55%), Postives = 127/187 (67.91%), Query Frame = 3 
Query:  315 MMFSNMFKKKEM------NYGELDGAAA----EAAQAALSGEVPSKSKAGDDIATFAGGCFWGLELAFQRVPGVVATSAGYTQGSYQQPSYSEVCSGASGHTEAIQVYYNPSEVSFDELLAVFFGRIDPTELNYQGGDEGPQYRTGVYYHTKAQEATARKVFAEEQKKIDRPIVTECMESAIYWPAE 845
            M F ++FK  E+      NY  L G  A    EAA+ A++ E PSKSK G  I TFAGGCFWGLELA+QRVPGVVAT  GYTQG  +QP+Y EVCS  SGHTEAIQ+ Y+PS V++ EL  + F RIDPT  +  G D GPQYR G+Y HT  + A A++   + Q K +RPIVTEC ++ ++WPAE
Sbjct:   83 MFFGDLFKAPELGSGPRINYDTLAGLPASFAREAAEYAMAKEAPSKSKDGHSITTFAGGCFWGLELAYQRVPGVVATCVGYTQGHLEQPTYKEVCSAMSGHTEAIQLTYDPSVVTYRELCELLFTRIDPTAKDRVGNDFGPQYRHGIYPHTDEEMAVAQQFIEDNQSKFNRPIVTECKKAVVFWPAE 269
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BLAST of mRNA_S-dermatodea_contig10254.186.1 vs. uniprot
Match: A0A4D9CTX0_9STRA (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTX0_9STRA)

HSP 1 Score: 191 bits (484), Expect = 2.840e-54
Identity = 94/167 (56.29%), Postives = 119/167 (71.26%), Query Frame = 3 
Query:  348 MNYGELDGAAA-EAAQAALSGEVPSKSKAGDDIATFAGGCFWGLELAFQRVPGVVATSAGYTQGSYQQPSYSEVCSGASGHTEAIQVYYNPSEVSFDELLAVFFGRIDPTELNYQGGDEGPQYRTGVYYHTKAQEATARKVFAEEQKKIDRPIVTECMESAIYWPAE 845
            ++Y  L G  A EAA+ AL G V  KSK G +IATFAGGCFWGLELA+QRV GV+ TS GYTQG  ++P+Y  VCSG SGHTEA+QV+++P EVS++ L  +   RI+PT  N  G D G QYR G+YYH + QE  A+KV  E Q +  +PIVTEC+ + +YWPAE
Sbjct:   79 IDYSTLTGMEAKEAAELALKGVVQDKSKDGYEIATFAGGCFWGLELAYQRVVGVIDTSVGYTQGKDEKPTYDYVCSGMSGHTEAVQVFFDPKEVSYEYLCKLLLTRINPTLKNQVGNDRGTQYRHGIYYHNEGQEKVAKKVLEEAQAQFSKPIVTECLPATVYWPAE 245
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BLAST of mRNA_S-dermatodea_contig10254.186.1 vs. uniprot
Match: W7TQD7_9STRA (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQD7_9STRA)

HSP 1 Score: 191 bits (484), Expect = 3.480e-53
Identity = 94/167 (56.29%), Postives = 119/167 (71.26%), Query Frame = 3 
Query:  348 MNYGELDGAAA-EAAQAALSGEVPSKSKAGDDIATFAGGCFWGLELAFQRVPGVVATSAGYTQGSYQQPSYSEVCSGASGHTEAIQVYYNPSEVSFDELLAVFFGRIDPTELNYQGGDEGPQYRTGVYYHTKAQEATARKVFAEEQKKIDRPIVTECMESAIYWPAE 845
            ++Y  L G  A EAA+ AL G V  KSK G +IATFAGGCFWGLELA+QRV GV+ TS GYTQG  ++P+Y  VCSG SGHTEA+QV+++P EVS++ L  +   RI+PT  N  G D G QYR G+YYH + QE  A+KV  E Q +  +PIVTEC+ + +YWPAE
Sbjct:   79 IDYSTLTGMEAKEAAELALKGVVQDKSKDGYEIATFAGGCFWGLELAYQRVVGVIDTSVGYTQGKDEKPTYDYVCSGMSGHTEAVQVFFDPKEVSYEYLCKLLLTRINPTLKNQVGNDRGTQYRHGIYYHNEGQEKVAKKVLEEAQAQFSKPIVTECLPATVYWPAE 245
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BLAST of mRNA_S-dermatodea_contig10254.186.1 vs. uniprot
Match: A0A7S2JVE8_9STRA (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JVE8_9STRA)

HSP 1 Score: 181 bits (460), Expect = 6.000e-51
Identity = 94/175 (53.71%), Postives = 117/175 (66.86%), Query Frame = 3 
Query:  411 VPSKSKAGDDIATFAGGCFWGLELAFQRVPGVVATSAGYTQGSYQQPSYSEVCSGASGHTEAIQVYYNPSEVSFDELLAVFFGRIDPTELNYQGGDEGPQYRTGVYYHTKAQEATARKVFAEEQKKIDRPIVTECMESAIYWPAEVRATAQWV---GCLDTREKTPRGRTAVQRC 926
            V S+ K     ATFAGGCFWGLELA+QRV GV  T+ GYTQG   +P+Y+EVCSGA+GHTEAI VYYNP E S++ LL  FF R+DPT +N QG D GPQYRTGVY HT  Q   A+  F EE+ +  RPI +E  E+ ++WPAE +   Q++   G   T + T +G T   RC
Sbjct:   83 VNSEKKPNLAAATFAGGCFWGLELAYQRVAGVEYTAVGYTQGPELKPTYNEVCSGATGHTEAICVYYNPEECSYESLLDTFFQRVDPTTVNGQGNDRGPQYRTGVYTHTPEQMEIAKARFEEEKSQYKRPIASELKEAQVFWPAE-KYHQQYLEKGGRFGTPQSTEKGSTETIRC 256
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BLAST of mRNA_S-dermatodea_contig10254.186.1 vs. uniprot
Match: A0A7S4ME41_9EUKA (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4ME41_9EUKA)

HSP 1 Score: 181 bits (458), Expect = 6.180e-51
Identity = 99/185 (53.51%), Postives = 122/185 (65.95%), Query Frame = 3 
Query:  309 MGMMFSNMF--KKKEMNYGELDGA----AAEAAQAALSGEVPSKSKAGDDIATFAGGCFWGLELAFQRVPGVVATSAGYTQGSYQQPSYSEVCSGASGHTEAIQVYYNPSEVSFDELLAVFFGRIDPTELNYQGGDEGPQYRTGVYYHTKAQEATARKVFAEEQKKIDRPIVTECMESAIYWPAE 845
            +G   S++F  ++   +YG+L G     A EA Q AL GEV + S  G  IATFAGGCFWG EL + R+ GVVAT  GYTQG+ +QP+YSEVCSG +GHTEA Q+ Y+P    ++ L A  F  IDPT LN  G D G QYR G+Y HT  Q A+AR V A EQK   +PIVTE  E+AI+WPAE
Sbjct:   26 LGNFLSSLFAVERTVFDYGKLKGLPESFAFEAGQQALKGEVAATSSDGLAIATFAGGCFWGTELQYMRMRGVVATCVGYTQGTLEQPTYSEVCSGTTGHTEACQIVYDPKRCPYELLCAKLFETIDPTVLNRVGNDVGTQYRHGIYPHTTEQLASARAVVAREQKSRTKPIVTEVKEAAIFWPAE 210
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BLAST of mRNA_S-dermatodea_contig10254.186.1 vs. uniprot
Match: A0A7R9U3A5_9STRA (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3A5_9STRA)

HSP 1 Score: 183 bits (464), Expect = 7.930e-51
Identity = 95/170 (55.88%), Postives = 116/170 (68.24%), Query Frame = 3 
Query:  354 YGELDGAAAEAAQAALSGEVPSKSKAGDD-----IATFAGGCFWGLELAFQRVPGVVATSAGYTQGSYQQPSYSEVCSGASGHTEAIQVYYNPSEVSFDELLAVFFGRIDPTELNYQGGDEGPQYRTGVYYHTKAQEATARKVFAEEQKKID-RPIVTECMESAIYWPAE 845
            Y  L   A EAA  AL+G+       G       + TFAGGCFWGLELAFQRV GV ATS GYT G  ++P+Y  +CSG +GHTEA+QV Y+P +VSFD+LL VFF R DPT LN QG D G QYR+GVYYH++ Q+A A K FAE++KK     +VTE +E+  YWPAE
Sbjct:  116 YPALGPFAKEAADYALAGQAQPLVSEGAGKGKLHVGTFAGGCFWGLELAFQRVVGVEATSVGYTHGEQRRPTYRSICSGGTGHTEAVQVLYDPEQVSFDKLLEVFFSRTDPTTLNRQGADTGTQYRSGVYYHSEEQKAAAEKAFAEQEKKYGANSVVTELLEAKEYWPAE 285
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10254.186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRH9_9PHAE5.160e-8963.10Peptide-methionine (S)-S-oxide reductase n=2 Tax=E... [more]
A0A6T5PGW5_HETAK5.770e-6364.63Peptide-methionine (S)-S-oxide reductase n=1 Tax=H... [more]
A0A835Z6G6_9STRA8.210e-6358.33Peptide-methionine (S)-S-oxide reductase n=1 Tax=T... [more]
K8Z531_NANGC1.340e-5961.21Peptide-methionine (S)-S-oxide reductase n=3 Tax=M... [more]
A0A7S2RMP4_9STRA6.750e-5654.55Peptide-methionine (S)-S-oxide reductase n=1 Tax=R... [more]
A0A4D9CTX0_9STRA2.840e-5456.29Peptide-methionine (S)-S-oxide reductase n=1 Tax=N... [more]
W7TQD7_9STRA3.480e-5356.29Peptide-methionine (S)-S-oxide reductase n=1 Tax=N... [more]
A0A7S2JVE8_9STRA6.000e-5153.71Peptide-methionine (S)-S-oxide reductase n=1 Tax=L... [more]
A0A7S4ME41_9EUKA6.180e-5153.51Peptide-methionine (S)-S-oxide reductase n=1 Tax=P... [more]
A0A7R9U3A5_9STRA7.930e-5155.88Peptide-methionine (S)-S-oxide reductase n=1 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10254contigS-dermatodea_contig10254:1091..7758 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score279.3
Seed ortholog evalue2.1e-72
Seed eggNOG ortholog2880.D7FRP8
Preferred nameMSRA4
KEGG koko:K02214,ko:K07304,ko:K14442,ko:K16914
KEGG Pathwayko03018,ko04110,ko04111,ko04113,map03018,map04110,map04111,map04113
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0006464,GO:0006807,GO:0006950,GO:0006970,GO:0006979,GO:0008113,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0009987,GO:0010033,GO:0016491,GO:0016667,GO:0016671,GO:0019538,GO:0031967,GO:0031975,GO:0033554,GO:0033744,GO:0034599,GO:0036211,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0071704,GO:0080167,GO:1901564
EggNOG free text desc.peptide-methionine (S)-S-oxide reductase activity
EggNOG OGsCOG0225@1,KOG1635@2759
EC1.14.11.27,1.8.4.11,2.7.11.1,3.6.4.13
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03009,ko03019,ko03032,ko03036
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionmethionine sulfoxide reductase
Ec32 orthologEc-00_003370.1
Exons7
Model size1274
Cds size870
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924147.759171-UTR-S-dermatodea_contig10254:1090..13901622924147.759171-UTR-S-dermatodea_contig10254:1090..1390Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10254 1091..1390 -
1694079050.269869-UTR-S-dermatodea_contig10254:1090..13901694079050.269869-UTR-S-dermatodea_contig10254:1090..1390Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10254 1091..1390 -
1622924147.8604052-UTR-S-dermatodea_contig10254:7654..77581622924147.8604052-UTR-S-dermatodea_contig10254:7654..7758Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10254 7655..7758 -
1694079050.3479922-UTR-S-dermatodea_contig10254:7654..77581694079050.3479922-UTR-S-dermatodea_contig10254:7654..7758Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10254 7655..7758 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924147.771306-CDS-S-dermatodea_contig10254:1390..16091622924147.771306-CDS-S-dermatodea_contig10254:1390..1609Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10254 1391..1609 -
1694079050.279802-CDS-S-dermatodea_contig10254:1390..16091694079050.279802-CDS-S-dermatodea_contig10254:1390..1609Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10254 1391..1609 -
1622924147.78223-CDS-S-dermatodea_contig10254:2369..25221622924147.78223-CDS-S-dermatodea_contig10254:2369..2522Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10254 2370..2522 -
1694079050.2878032-CDS-S-dermatodea_contig10254:2369..25221694079050.2878032-CDS-S-dermatodea_contig10254:2369..2522Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10254 2370..2522 -
1622924147.7959564-CDS-S-dermatodea_contig10254:3619..37521622924147.7959564-CDS-S-dermatodea_contig10254:3619..3752Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10254 3620..3752 -
1694079050.2968013-CDS-S-dermatodea_contig10254:3619..37521694079050.2968013-CDS-S-dermatodea_contig10254:3619..3752Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10254 3620..3752 -
1622924147.8082943-CDS-S-dermatodea_contig10254:4757..48161622924147.8082943-CDS-S-dermatodea_contig10254:4757..4816Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10254 4758..4816 -
1694079050.312411-CDS-S-dermatodea_contig10254:4757..48161694079050.312411-CDS-S-dermatodea_contig10254:4757..4816Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10254 4758..4816 -
1622924147.8188403-CDS-S-dermatodea_contig10254:5846..59741622924147.8188403-CDS-S-dermatodea_contig10254:5846..5974Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10254 5847..5974 -
1694079050.321791-CDS-S-dermatodea_contig10254:5846..59741694079050.321791-CDS-S-dermatodea_contig10254:5846..5974Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10254 5847..5974 -
1622924147.8367465-CDS-S-dermatodea_contig10254:6730..68741622924147.8367465-CDS-S-dermatodea_contig10254:6730..6874Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10254 6731..6874 -
1694079050.3294022-CDS-S-dermatodea_contig10254:6730..68741694079050.3294022-CDS-S-dermatodea_contig10254:6730..6874Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10254 6731..6874 -
1622924147.8503685-CDS-S-dermatodea_contig10254:7620..76541622924147.8503685-CDS-S-dermatodea_contig10254:7620..7654Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10254 7621..7654 -
1694079050.3398557-CDS-S-dermatodea_contig10254:7620..76541694079050.3398557-CDS-S-dermatodea_contig10254:7620..7654Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10254 7621..7654 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10254.186.1prot_S-dermatodea_contig10254.186.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10254 1391..7654 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10254.186.1

>prot_S-dermatodea_contig10254.186.1 ID=prot_S-dermatodea_contig10254.186.1|Name=mRNA_S-dermatodea_contig10254.186.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=290bp
MKTTRAIMLSAALATSARQGGGATAFVQSPLVSRRASGPSAFTGKAVSPA
SRSSNSPAFASANTGRNPMGMMFSNMFKKKEMNYGELDGAAAEAAQAALS
GEVPSKSKAGDDIATFAGGCFWGLELAFQRVPGVVATSAGYTQGSYQQPS
YSEVCSGASGHTEAIQVYYNPSEVSFDELLAVFFGRIDPTELNYQGGDEG
PQYRTGVYYHTKAQEATARKVFAEEQKKIDRPIVTECMESAIYWPAEVRA
TAQWVGCLDTREKTPRGRTAVQRCRRDRCWRVLRERTLL*
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mRNA from alignment at S-dermatodea_contig10254:1091..7758-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10254.186.1 ID=mRNA_S-dermatodea_contig10254.186.1|Name=mRNA_S-dermatodea_contig10254.186.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6668bp|location=Sequence derived from alignment at S-dermatodea_contig10254:1091..7758- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCCAACTTCCCTGGCTTAGGACCCACCATCGTTATCCATCATCGATTCG
TGCCGGAGGCAAGCAACCCGCTTCTGGTCTCGTGGACACTGGGCAATCAG
AGATATGAAGACGACCAGAGCGATCATGCTCTCAGCAGGCAAGCATCAAA
TACAGACGAGAGGCAGAGGCATGTAGCTGTATACACTCGGTATGCGTACT
TGGATCCAATACCTTGTGCACACGAACATCACCTTCAGACGCGGCATCGA
CTGAGGGCCTGTCTGCTTTCTGTTTCCCATTCAAGAAGTTTGAGCGAGCT
CTTGATCGTGTGTGCGAACGCCAGCAAAGGTTGTGTTTCGCAGTCCAGAA
GTCCTGCAGATGGCGACAAATACTACGTAAATGCTATATAATCCATCTTC
GCATGTAACAGCACATTTTATCATGTGACGTGCTGGAGCTAACGCGAACG
TCGTATTATACACACCACCGTGTGGCTTGTACACAACTACAGAATACTGG
CTGGCTGAGGTAACGTTGTGCATACCGTGTACTGGTGTACGCTATTATAT
ACACCAATTACAGCGTAATACTTGTCATCTGTACAAGTTCAGTATGCGCA
AGTCCAAGCAACTGATGTGTAAGCTCTAGAGCATTACTTGTACGTGCAAA
CATTGATCATCTCCAACCTGCAACTGCTGGATGTTGCAAGTACAGTATTA
AATGTAGCACGCCTTTGTATCGTCCAAGTATACCATACTGGTTTGCAGCG
GGAATTTAGAATGCAACGCGACGTCGCCCTGCAGCCCACGAATGCGGCCG
CAAGCAGCTCCTCAGTCACTCAAACACGAGGCATCACACCGAAACAGCTC
TTGCTCTTGCGACTTTTGTGCACACACGCAACAGCACTGGCTACCAGCGC
GCGCCAGGGAGGAGGAGCCACCGCCTTCGTCCAGAGCCCCCTCGTATCCC
GCCGAGCCAGCGGCCCCAGCGCCTTCACGGGGAAGGCAGTGTCTCCAGCG
AGCCGCTCGTCTAACTCTCCCGCGTTCGGTGAGAGGTGTAAATGGTAACA
AGCAGCAGCAGCAGCAGCCTCGGCGGCAAGATATGGTCGTTTTCTGTGTG
TACATTGCTGTGTACTAATCGCATCCCAGGGTAGCTCATGCTGGGAAAGT
AATGACAGCCTGGGGACAGCCTGGGGAGTGCATGAAGGAAACGGGAACAC
ACCAGCGGCTTGGTTGCCGCACGGATGTACCAGCTCTGAAGTTTTACAAC
TGCATGCAGTTTTGTACTGCCGCCCATGTGTTTTAGGCCTACCCCGTTGT
CCCGTTCGTGTCTTTCGTGATGTGCCTCTGGTGATGCTGTGCACTCTATG
AATAGAAGGACACCGCGATCACGCGCCGATAACTTATTTTCGATGATACC
ATTGTGATCAGCGATTACAAAGACGAGGCCGTGCCAGGGACATTGCAATT
CGGCCATGACGACTTGTGGGAATGGATGTGAAAATGCACACCTGGTGCAC
ATCGGCGAAACGGTCGCGGGCGAGCAGCGCATATCGATTTACAGTCAGCA
TCATAATTGGTAGATCTACCACCCCTTCATGCAGGCTCTTCGAATCGGAA
CGGCTTCATCGCTTACAGATCCGTCGAAGGCGGCTTGTTTCCGAACCCTC
TCTTCGTCAAGTCACATAAATATCAAAGCTTGTGTAACCACCTGCCTCGC
GACCGAGTCGTCAGACATGCGTTGAAGCGTTGACTAACGAGGCACCGTTC
CACTTGTCTCCTCCCGCGACCTTCGGCGAGTCAGCTTCGGCCAACACCGG
ACGCAACCCGATGGGCATGATGTTCTCGAACATGTTCAAGAAGAAGGAGA
TGAACTACGGCGAGCTGGACGGAGCCGCGGCGGAGGCCGCGCAGGCAGCT
CTTAGTGGCGAGGTACCCAAATGCGTTTCTTTGTCGAAGAAATACCCCCG
TTCACTCCACGGTTAACCCCCTCTCCCCGTTCTGATCCGCATCCGTTGGC
CCGTTTGAGTGTGTGGTCCTGAGTCGTTTCCCAGTTTTTTATTGTGTGCT
GTGTGCGTTTGTGTCCCCTTACGTATTGTCTCCACTGATTGGGATACCTC
TGAGAGCGTGCCCGGTCTTGAAGTATATATATTATTGAGCGGGAGGTTCA
ATACCGAACTCTTGCGCAACTGCTTCCGCCCACGAGTAAACTGCTACTGA
AGCTCCGAATGTCCCTTCACTCGCGCGAGGTTTACCTGGTAGTCACTCGC
TGAATTTACCGCCAGCAATCGGCTCCTTCACTTTCGCGGCCGAACCCCTT
ATAATATTACGGGGGACCATAGTTAACAGGTCCAAATTTGCCGCAAGTCT
CAACCTAGAAACACCAAAATAGGCTGGAATTATCGAGATTTCAAGGTCGA
TGTTCTTGTGTACTGGTATGGCCATTTTATTTATTTACTTATTTATTTTT
CCATGAGAGTTTTGGTGTTTGGCTGTTCATGGTCGGAATAGCTGGGTATT
CATGGTCATGATATTTGCTCCTGATTACTGTGTACCTCAGTAATAGTACG
TTGTACATGCACGTACTGCGCAGTTAGCAGTCGGTAGGTCGACGAAAATA
GTGATGATGCATCGCTTATTCGCGCTTTTTGTTCAGGACACCCCCAATAA
CGGGGAACCGACGCTTGGCCCACTGTTGAAGGGGAGGTTTACCTTCAACT
ACCGTCCCAACGGCATTTTGTTTTTATATGCGTGGCCATAATTTCGCGAT
GGCGCTTCGTGCGGTCGCGCAAGCGGCCGGAGCAGTTGACGTTTTGGACA
GCCCCTGGTCGTGGGCGTTCATTTGACAGCAAAAGGTTGCTGCCTCGTGT
CGCAGCGGATACTTGGCTGTCGACGGTCTGGCTCACCACCCGCGCGTTGC
GTTTGCTGTCTTTGGTTTGGACGCGGGGCGTTCCTCCAACAGGTGCCCTC
CAAGAGCAAAGCCGGCGACGACATCGCCACCTTCGCTGGAGGCTGCTTCT
GGTGAGTGCTGTGTAACCCCTGGCCCCTCCCCTGAAAACAGCACGAATCT
CACCGAATGGCGTGAGACTCAGGCGATCCGTATTTGGTATTTAAAATACT
TTCGTTCGAAGGGATGCGCGTATACTCCATGGTACGGTTTCTGATGGGTG
ACGGCTTGAAATCGCACCCCTCCCCCGACCCCGTGGTAACCACGCGGGGT
AGGTGACCGCACGTTTGTCCTTACCTGTCGTGATCGCACACAGCTCACAC
GAAATCGCGTATCAAGCGACATACTAAACTACCGTAGCGCTGTCGCGCTC
CAGGTTGTGGTCGCTCGCCGCCGTTGAGTATTTGCCGCAGGTACGGACAA
CAGGTTAACGATCGTATCGATACCGAGCGAATAATCTGGAGGCTCCTCGC
GCAACTACTCGTATTACTAGCATCATGACAGCCGCGTGTAGCTACGAATG
GTGTGTACGGCCTTTGGAGTTGTGTGTACAACTTATCCTTGCGTTAACGC
GACCCGTCTACGATTCCCCAGCGCACCGCGACGCAAGCCTCGGGACGCAT
CCCCGCGTCGGTGTCGTGACGAGGGAGGCATGCGGAAGACAGTGGTATCG
CGCCTTTTTCCATTACGCGCGTCAGCTCCTGCTATGAACGCAGACAGCCG
TACGTGCTCCACCTATGATTTGTTGTCCATCAGGGGCCCATTTTGTTGTA
GTGGAGGTTCACGAGACCTTAACGGGCGAACAGAGAAAGGGGGGCGTCCG
ACTTACATTCCACGGCCTTGATGGTCTTGGGCCAGCGGCCGGCCGGCCTA
GGGCAGACATCGTGGCCCCTCCGCGTTCACACGTCAGGGCTTCGCCCTGG
CCCATCCATCACCCCACCCTCTTCGCCATTTACTCGATGGAACTGTTACT
GTTCCACGAAATATGGAAGAGGTGTGTTACTGGCGTCTAGCTGTAGTACT
TGCCTACCACCTTTGAATTTCCGCCCATGCGCGCGCTCGAAACGAAAACA
AAACAGGGGGCTGGAGCTTGCGTTCCAACGCGTGCCCGGCGTGGTGGCCA
CGTCGGCCGGCTACACTCAGGGCAGCTACCAGCAACCCTCGTACAGCGAG
GTCTGCAGCGGGGCTTCAGGCCACACGGAGGCCATACAGGTGTGTTGGCA
TTATATAGTAGAAACAGTGTTTAAGACCATTTTTTGTTGTTGCTGTTTCG
TTTACTGGGATGGTGCGGTGTTGAGGCGGCGCTGCGACGGCCGGTGTCTG
TTGGCCAAAGTGTTACTCGATTTTTTCCGTATGTGGGATCCCACACGTTT
TTGTGGCACATTCCGCTGGTGGATGGAGGAGGCCGGGGTGATTGCCAGGC
GCGTAACCCAATTGCGCTGAAGTAAGTGGCGGGCCTTTTGTCGGCGCCGG
TAAGGACAGAGCGCTTGACACTCACGAATCTCCGAAAAACACGATTGACT
TTTGTTTACTTCGAGTTCTGCAGTCAAAACAGTGCTGCACCATCAGGCGC
GCCGAAGTTATCCCTCGTTCAACTACCGCACATTCAGTGTGTTCCCACCG
CCGCCAGAGATGAGCCCGGCATGTGTTTGGCATATACGGTGACCCTGCCC
CGCGACCAAGGTGTACGAACCGGAAATTCACCTAAAATCCTTTTGGGCGT
AAAGCTATTAATCGCAGCTATTGTTGTTGGGAGCATCGTGTCCGCACCCT
GGTTCTCATCACAACCCCCGGGAATTGATTTGCGAGGTTTCGGCTTTGAG
GTTAACCGAGCTGATCCAACGCAGTGGTCGGGGCTGGCGGTACGAGATGC
ATGACAGAACACTTGTTCGAAGTCCGCTGAGCTTTTTCACTCGTTGCGTT
GGATTCGCCACCTGGCCTTGGACATACATAGCGCCAGCCGAGCACGCTGG
GGACTTTTTTGGACGCAGCGGTTACCCCGAGGGTAGAGAGGGATTTGGCG
CGAAAACCTGATCGACGAGGCCCCGAGTTAGACTAGCTTTGGGTCCGTGT
CAGCGCCATTCCCGCCCCTGCCAAACGGCTCCTCGCGTGTTTCCTCGCTT
ACGCGCTGGATTCATCCCGCCTCGTTTTTGCCCTGCCGGGCCGGGAAACT
CCGGCGGTTGACCCAGGTCCCGCCCCAGGCCTTCGATAAGGATTATCGAT
CACATGTCTTCCGACCGGTGGCACGATGTGCGTCTTATGAACGCACCCTT
CTCAATATCACTGGTTTGTGTTTTGCTTAACGACAGGTTTACTACAACCC
TTCCGAGGTTTCGTTCGACGAGCTTCTCGCGGTGTTCTTCGGCCGGATCG
ACCCCACCGAGCTGAACTACCAGGGGGGCGATGAGGGCCCGCAGTACCGC
ACCGGCGTGTACTACCACACTAAGGCACAGGAGGCCACGGTGCGTACGCC
CTTCGTTTTTACATGCACCAGAGTCAGCCGCCTAGTCCTTATGTATAATT
TGGAACGTGGCTAATGCAATGCGTCTCTTTCGCGCCTCTGTTAAGGACCT
ATGATAGCTAGCTTCCACATGCTGAAGACCACGCGAAAGTGCGACGTCTT
GCAGCACGGCCCCCGCGGCCGCACGTCTTGTCTACCCCTGCCTGCCGCGA
ATCGTGACGTGCTCCGCGCATGAGCTCTGGGTACGCACGCGGTAACGCCT
AGCCTCGCCTGTGAAGCAGCCGAAAGACGGCTTGCGGGAGACTCAGAACA
GTTGACACCGCCCACTGTTTGTTGTGGAGAGCCTATCCCGTACGACAGTA
TGAAGTGCGTGAGTGTCACTGATTCTACACCGTGGAGTGCTATTTCGTCT
CAGCTCGTACGCCCCTCTGCCGATGCGTCACGCATGTCGCCACGGATGTC
CCGTTCGCTGAGATGGCGCTCGATTCGATGTTGAGACAATCTCCTCTATA
TTCGTGTCGTGTGTGAGCTTGCGAACACTAAACCGCCCACCTCGAGCCCA
ACGGCAGTTACGTTATCTTTAATTAGTATACTCCTCGCCAAGCTAGTTTA
TAACCTCCACAAAGACGCAAAGACAAAGACGAGACCGCCTGCCTTTTCTC
AACGTTTTTCTTTGTTTCACGTGGTCATGGCTCATCGTTCGCGTTGTTCT
TTCGGTGGTTGTGTTTCCTTGTTTTACGCTGGATCGCGTGCTCGGCCAGG
CACGGAAGGTCTTCGCCGAGGAGCAGAAGAAGATCGACAGGCCGATAGTC
ACGGAATGCATGGAATCCGCCATCTACTGGCCGGCAGAGGTGAGAGCGAC
AGCACAATGGGTAGGTTGTCTTGATACCCGCGAAAAGACCCCGCGAGGAA
GAACTGCCGTACAGCGATGCAGAAGAGACCGCTGTTGGCGTGTGTTGCGT
GAAAGGACGCTGCTATGATTCAGCGTTATCTTTAGGTTGTGTGTCGTTGT
GGCTTGACATGCCGAGCCGAGCGTAAGAATGGCGAAACAGAACCCAAAAT
TTACTTCGAGCTTGGATATCATTGGACCGGCCAGGCGTATTCACTCACCA
CCTTCTGCACGACTTCGCACCTGCGGGTTACGGCGCGTATATACAAGAAG
GGTATAAAATCTTGTGCTTTGTCGGTGCACATGGAAGTTAGAGCGGGAAG
CAGAGACACACAATTACTATTTAATAGAGGAATCAGAGAGCTTGGAACCG
GATTGCCGCTTAGCGCCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig10254:1091..7758-

>mRNA_S-dermatodea_contig10254.186.1 ID=mRNA_S-dermatodea_contig10254.186.1|Name=mRNA_S-dermatodea_contig10254.186.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1740bp|location=Sequence derived from alignment at S-dermatodea_contig10254:1091..7758- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAGACGACCAGAGCGATCATGCTCTCAGCAGATGAAGACGACCAGAG
CGATCATGCTCTCAGCAGCACTGGCTACCAGCGCGCGCCAGGGAGGAGGA
GCCACCGCCTTCGTCCAGAGCCCCCTCGTATCCCGCCGAGCCAGCGGCCC
CAGCGCCTTCACGGGGAAGGCAGTGTCTCCAGCGAGCCGCTCGTCTAACT
CTCCCGCGTTCGCACTGGCTACCAGCGCGCGCCAGGGAGGAGGAGCCACC
GCCTTCGTCCAGAGCCCCCTCGTATCCCGCCGAGCCAGCGGCCCCAGCGC
CTTCACGGGGAAGGCAGTGTCTCCAGCGAGCCGCTCGTCTAACTCTCCCG
CGTTCGCTTCGGCCAACACCGGACGCAACCCGATGGGCATGATGTTCTCG
AACATGTTCAAGAAGAAGGAGATGAACTACGGCGAGCTGGACGGAGCCGC
GGCGGAGGCCGCGCAGGCAGCTCTTAGTGGCGAGCTTCGGCCAACACCGG
ACGCAACCCGATGGGCATGATGTTCTCGAACATGTTCAAGAAGAAGGAGA
TGAACTACGGCGAGCTGGACGGAGCCGCGGCGGAGGCCGCGCAGGCAGCT
CTTAGTGGCGAGGTGCCCTCCAAGAGCAAAGCCGGCGACGACATCGCCAC
CTTCGCTGGAGGCTGCTTCTGGTGCCCTCCAAGAGCAAAGCCGGCGACGA
CATCGCCACCTTCGCTGGAGGCTGCTTCTGGGGGCTGGAGCTTGCGTTCC
AACGCGTGCCCGGCGTGGTGGCCACGTCGGCCGGCTACACTCAGGGCAGC
TACCAGCAACCCTCGTACAGCGAGGTCTGCAGCGGGGCTTCAGGCCACAC
GGAGGCCATACAGGGGGCTGGAGCTTGCGTTCCAACGCGTGCCCGGCGTG
GTGGCCACGTCGGCCGGCTACACTCAGGGCAGCTACCAGCAACCCTCGTA
CAGCGAGGTCTGCAGCGGGGCTTCAGGCCACACGGAGGCCATACAGGTTT
ACTACAACCCTTCCGAGGTTTCGTTCGACGAGCTTCTCGCGGTGTTCTTC
GGCCGGATCGACCCCACCGAGCTGAACTACCAGGGGGGCGATGAGGGCCC
GCAGTACCGCACCGGCGTGTACTACCACACTAAGGCACAGGAGGCCACGG
TTTACTACAACCCTTCCGAGGTTTCGTTCGACGAGCTTCTCGCGGTGTTC
TTCGGCCGGATCGACCCCACCGAGCTGAACTACCAGGGGGGCGATGAGGG
CCCGCAGTACCGCACCGGCGTGTACTACCACACTAAGGCACAGGAGGCCA
CGGCACGGAAGGTCTTCGCCGAGGAGCAGAAGAAGATCGACAGGCCGATA
GTCACGGAATGCATGGAATCCGCCATCTACTGGCCGGCAGAGGTGAGAGC
GACAGCACAATGGGTAGGTTGTCTTGATACCCGCGAAAAGACCCCGCGAG
GAAGAACTGCCGTACAGCGATGCAGAAGAGACCGCTGTTGGCGTGTGTTG
CGTGAAAGGACGCTGCTATGAGCACGGAAGGTCTTCGCCGAGGAGCAGAA
GAAGATCGACAGGCCGATAGTCACGGAATGCATGGAATCCGCCATCTACT
GGCCGGCAGAGGTGAGAGCGACAGCACAATGGGTAGGTTGTCTTGATACC
CGCGAAAAGACCCCGCGAGGAAGAACTGCCGTACAGCGATGCAGAAGAGA
CCGCTGTTGGCGTGTGTTGCGTGAAAGGACGCTGCTATGA
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