mRNA_S-dermatodea_contig10250.185.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10250.185.1
Unique NamemRNA_S-dermatodea_contig10250.185.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig10250.185.1 vs. uniprot
Match: D8LFI2_ECTSI (MFS domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFI2_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 6.880e-32
Identity = 63/93 (67.74%), Postives = 74/93 (79.57%), Query Frame = 2
Query:    8 LGVVSDVYGRLIGFKIATILVVLFGLLTVAAPGFWWLLLFRSLVGVGAGGMEVPFDLLSEIVPRKDRAEVLLGVQATWAVGSLFVGVVAWAVL 286
            LGV SDVYGR   F +AT+LVVLFGL T  A  FWWLLLFRSLVGVGAGGMEVPFDLL E++  ++++ +L+ VQ  WA+GSLFVG  AWAVL
Sbjct:   87 LGVFSDVYGRRPAFLVATLLVVLFGLSTTFATSFWWLLLFRSLVGVGAGGMEVPFDLLGELITHREKSRILVDVQVMWAMGSLFVGFAAWAVL 179          
BLAST of mRNA_S-dermatodea_contig10250.185.1 vs. uniprot
Match: A0A6H5JGP7_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGP7_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 3.000e-30
Identity = 61/93 (65.59%), Postives = 73/93 (78.49%), Query Frame = 2
Query:    8 LGVVSDVYGRLIGFKIATILVVLFGLLTVAAPGFWWLLLFRSLVGVGAGGMEVPFDLLSEIVPRKDRAEVLLGVQATWAVGSLFVGVVAWAVL 286
            LGV SD+YGR   F +AT+LVVLFGL T  A  FWWLLLFRSLVGVGAGGM VPFDLL E++  ++++ +L+ VQ  WA+GSLFVG  AWAVL
Sbjct:  294 LGVFSDLYGRRPAFLVATLLVVLFGLSTTFATSFWWLLLFRSLVGVGAGGMGVPFDLLGELITHREKSRILVDVQVMWAMGSLFVGFAAWAVL 386          
BLAST of mRNA_S-dermatodea_contig10250.185.1 vs. uniprot
Match: A0A6G0WD31_9STRA (MFS domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WD31_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 2.020e-17
Identity = 42/95 (44.21%), Postives = 58/95 (61.05%), Query Frame = 2
Query:    2 MFLGVVSDVYGRLIGFKIATILVVLFGLLTVAAPGFWWLLLFRSLVGVGAGGMEVPFDLLSEIVPRKDRAEVLLGVQATWAVGSLFVGVVAWAVL 286
            +F G  +D YGR +GF ++   + +FG+ +   P  WWL+  R+LVG G  G  VPFDLL+E +P K+R  VLL  Q  W VG  FV  +AW V+
Sbjct:  108 LFWGFFADKYGRRLGFLLSAFCIAVFGIASAFVPNVWWLMFCRALVGFGVSGALVPFDLLAEFLPDKERGRVLLIFQLYWTVGIAFVAGLAWIVV 202          
BLAST of mRNA_S-dermatodea_contig10250.185.1 vs. uniprot
Match: A0A1V9Z8D7_9STRA (Transporter n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z8D7_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 3.010e-15
Identity = 39/95 (41.05%), Postives = 60/95 (63.16%), Query Frame = 2
Query:    2 MFLGVVSDVYGRLIGFKIATILVVLFGLLTVAAPGFWWLLLFRSLVGVGAGGMEVPFDLLSEIVPRKDRAEVLLGVQATWAVGSLFVGVVAWAVL 286
            +F G   D YGR +GF  + + + +FG+L+  A   ++L++ R+LVG G  G  VPFDL++E +P K+R  VL+  Q  W VG  FV ++AW V+
Sbjct:  105 LFWGFFGDKYGRRMGFLWSALCIAIFGVLSAFATNVYYLMVCRALVGFGVAGSLVPFDLMAEFLPDKERGRVLMYFQLFWTVGIAFVAILAWVVI 199          
BLAST of mRNA_S-dermatodea_contig10250.185.1 vs. uniprot
Match: T0Q6G6_SAPDV (MFS domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0Q6G6_SAPDV)

HSP 1 Score: 78.2 bits (191), Expect = 7.720e-15
Identity = 40/95 (42.11%), Postives = 60/95 (63.16%), Query Frame = 2
Query:    2 MFLGVVSDVYGRLIGFKIATILVVLFGLLTVAAPGFWWLLLFRSLVGVGAGGMEVPFDLLSEIVPRKDRAEVLLGVQATWAVGSLFVGVVAWAVL 286
            +F G   D YGR +GF  + + + +FG+L+  A   ++L+  R++VG G  G  VPFDL++E +P K+R  +LL  Q  W VG  FV V+AW+VL
Sbjct:  103 LFWGYFGDKYGRRMGFLWSALCIAIFGVLSAFATNVYYLMACRAVVGFGVAGSLVPFDLMAEFLPDKERGRILLYFQLFWTVGIGFVAVLAWSVL 197          
BLAST of mRNA_S-dermatodea_contig10250.185.1 vs. uniprot
Match: A0A1Y1IFI0_KLENI (Transporter family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IFI0_KLENI)

HSP 1 Score: 75.1 bits (183), Expect = 9.580e-14
Identity = 37/92 (40.22%), Postives = 57/92 (61.96%), Query Frame = 2
Query:   11 GVVSDVYGRLIGFKIATILVVLFGLLTVAAPGFWWLLLFRSLVGVGAGGMEVPFDLLSEIVPRKDRAEVLLGVQATWAVGSLFVGVVAWAVL 286
            G+VSD +GR +GF    +  ++FGLL+  +P +W+LL+ R+LVG G GG  V F L  E +P   R   L+ V+  W +GS+   ++AW V+
Sbjct:  120 GIVSDEWGRRVGFFATAVFTLVFGLLSAVSPAYWFLLVSRALVGFGLGGGSVIFSLFMEFIPSSRRGFWLVCVEFFWTIGSVAQALLAWIVM 211          
BLAST of mRNA_S-dermatodea_contig10250.185.1 vs. uniprot
Match: A0A177BET0_9BILA (Putative transporter SVOPL n=1 Tax=Intoshia linei TaxID=1819745 RepID=A0A177BET0_9BILA)

HSP 1 Score: 73.9 bits (180), Expect = 2.400e-13
Identity = 37/83 (44.58%), Postives = 54/83 (65.06%), Query Frame = 2
Query:   11 GVVSDVYGRLIGFKIATILVVLFGLLTVAAPGFWWLLLFRSLVGVGAGGMEVPFDLLSEIVPRKDRAEVLLGVQATWAVGSLF 259
            G +SD YGRLI   +++I ++ FG+ T  +P ++W+L+ R +VG   GG    F L+SE +P K RA+VL+     WAVGSLF
Sbjct:  119 GTISDKYGRLITMFVSSIWILYFGIGTAFSPNYYWMLILRGIVGFAFGGAIQSFTLISEYLPSKYRAKVLIIYSLMWAVGSLF 201          
BLAST of mRNA_S-dermatodea_contig10250.185.1 vs. uniprot
Match: A9V5I0_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V5I0_MONBE)

HSP 1 Score: 73.6 bits (179), Expect = 3.310e-13
Identity = 38/92 (41.30%), Postives = 58/92 (63.04%), Query Frame = 2
Query:   11 GVVSDVYGRLIGFKIATILVVLFGLLTVAAPGFWWLLLFRSLVGVGAGGMEVPFDLLSEIVPRKDRAEVLLGVQATWAVGSLFVGVVAWAVL 286
            G ++D YGR      +  LV + G+ +  AP F  L+  R+ VG+G GGM VPFD+L+E +P + R + L+G++  W  G+LFV  +AWA+L
Sbjct:  108 GPMADRYGRKAATFASAALVAIAGVASAFAPNFEVLVALRAFVGLGIGGMAVPFDILAEFMPSEYRGKALMGIEFFWTFGTLFVNGLAWAML 199          
BLAST of mRNA_S-dermatodea_contig10250.185.1 vs. uniprot
Match: A0A7U0YEW3_9TREM (Synaptic vesicle glycoprotein 1 n=1 Tax=Cryptocotyle lingua TaxID=66766 RepID=A0A7U0YEW3_9TREM)

HSP 1 Score: 69.7 bits (169), Expect = 7.460e-12
Identity = 38/83 (45.78%), Postives = 48/83 (57.83%), Query Frame = 2
Query:   11 GVVSDVYGRLIGFKIATILVVLFGLLTVAAPGFWWLLLFRSLVGVGAGGMEVPFDLLSEIVPRKDRAEVLLGVQATWAVGSLF 259
            G +SD +GR   F     L+  +G LT  +P + WLL+ R  VG   GG    F LLSE +P K RA+VLLG Q  WA+GS F
Sbjct:  119 GFISDRFGRWPTFFTVLTLISYYGFLTAVSPTYVWLLILRFAVGFAIGGCSSSFALLSEFLPVKHRAKVLLGFQIFWAIGSTF 201          
BLAST of mRNA_S-dermatodea_contig10250.185.1 vs. uniprot
Match: A0A4S2LIQ0_OPIFE (MFS domain-containing protein n=3 Tax=Opisthorchiidae TaxID=6196 RepID=A0A4S2LIQ0_OPIFE)

HSP 1 Score: 68.9 bits (167), Expect = 1.390e-11
Identity = 40/92 (43.48%), Postives = 53/92 (57.61%), Query Frame = 2
Query:   11 GVVSDVYGRLIGFKIATILVVLFGLLTVAAPGFWWLLLFRSLVGVGAGGMEVPFDLLSEIVPRKDRAEVLLGVQATWAVGSLFVGVVAWAVL 286
            G VSD +GR   F     L+  +G LT  +P + W+L+ R  VG   GG    F LLSE +P K RA+VLLG Q  WA+GS F   +A+ +L
Sbjct:  119 GFVSDRFGRWPTFFTVLTLISYYGFLTAVSPTYVWVLILRFTVGFAIGGCSSSFALLSEFLPVKYRAKVLLGFQIFWAIGSTFEVGIAYLIL 210          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10250.185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFI2_ECTSI6.880e-3267.74MFS domain-containing protein n=2 Tax=Ectocarpus s... [more]
A0A6H5JGP7_9PHAE3.000e-3065.59MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6G0WD31_9STRA2.020e-1744.21MFS domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A1V9Z8D7_9STRA3.010e-1541.05Transporter n=1 Tax=Achlya hypogyna TaxID=1202772 ... [more]
T0Q6G6_SAPDV7.720e-1542.11MFS domain-containing protein n=2 Tax=Saprolegnia ... [more]
A0A1Y1IFI0_KLENI9.580e-1440.22Transporter family protein n=1 Tax=Klebsormidium n... [more]
A0A177BET0_9BILA2.400e-1344.58Putative transporter SVOPL n=1 Tax=Intoshia linei ... [more]
A9V5I0_MONBE3.310e-1341.30Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A7U0YEW3_9TREM7.460e-1245.78Synaptic vesicle glycoprotein 1 n=1 Tax=Cryptocoty... [more]
A0A4S2LIQ0_OPIFE1.390e-1143.48MFS domain-containing protein n=3 Tax=Opisthorchii... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10250contigS-dermatodea_contig10250:2117..3407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size289
Cds size288
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924147.7167308-CDS-S-dermatodea_contig10250:2116..23291622924147.7167308-CDS-S-dermatodea_contig10250:2116..2329Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10250 2117..2329 +
1694079050.2443547-CDS-S-dermatodea_contig10250:2116..23291694079050.2443547-CDS-S-dermatodea_contig10250:2116..2329Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10250 2117..2329 +
1622924147.7254367-CDS-S-dermatodea_contig10250:3332..34071622924147.7254367-CDS-S-dermatodea_contig10250:3332..3407Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10250 3333..3407 +
1694079050.252367-CDS-S-dermatodea_contig10250:3332..34071694079050.252367-CDS-S-dermatodea_contig10250:3332..3407Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10250 3333..3407 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10250.185.1prot_S-dermatodea_contig10250.185.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10250 2117..3407 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10250.185.1

>prot_S-dermatodea_contig10250.185.1 ID=prot_S-dermatodea_contig10250.185.1|Name=mRNA_S-dermatodea_contig10250.185.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=96bp
DVPRCRKRRLRQAHWLQDRHDPRCAVWATDSGGPRLLVAAAIQELSRRRG
RRNGGSLRSLERDRSPEGQGGSPLGRPSDLGGRLLVRWRRGLGGA*
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mRNA from alignment at S-dermatodea_contig10250:2117..3407+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10250.185.1 ID=mRNA_S-dermatodea_contig10250.185.1|Name=mRNA_S-dermatodea_contig10250.185.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1291bp|location=Sequence derived from alignment at S-dermatodea_contig10250:2117..3407+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GATGTTCCTCGGTGTCGTAAGCGACGTCTACGGCAGGCTCATTGGCTTCA AGATCGCCACGATCCTCGTTGTGCTGTTTGGGCTACTGACAGTGGCGGCC CCCGGCTTCTGGTGGCTGCTGCTATTCAGGAGCTTAGTCGGCGTCGGGGC CGGCGGAATGGAGGTTCCCTTCGATCTCTTGAGCGAGATCGTTCCCCGGA AGGACAGGGCGGAGTGAGTTTTTGATCGGTTGCGATCTGTCGATCGATAG ATGGATCGATCGATGGATATGTTGGTCGGTCGATCGATATGTTGATCGAT CGATAAGTTGATCGATCGATTCATTCATTCATTCATTGCGTTATATAGTT ATTCTTGAACGAACGGTTGGTTTGGTTTATTGACGGGTTTTGAATGGTGA TCAAACGTAAAACGTTTTGTAAATAGAGGGGTGTCTTTTTCTCCTTCTTC TTCTTTTGGATTTTTTTTCGAGTTTTTGAATGACACTTCAGACCGGAATA TCGCACATGCTGTAAAGGCCAGACTAGATTGGTTTATGTTTTCTTATGTT GGGCATACTGTTAGGCACTTTGGGTCCTGAATACTATGTACCTCTGTAAT CGCACCTGCGGAGGCCTGCATTCGCGCTTAGAGCATTTGATAAAGGTGTG TGCGTCGTTGCGCCTGGATAGGTGCAGTAGATAGTTGTTTCAACCGTCCC GATTTTTGGCTCGCCCCGCGTCTGTGGCCACCGAATACTTGCAGGAGCTC CTTGAAGACAGACGAAGTATTTGTTTGGACGGCCTTCCTTCGCTTTGACA CCCTAGCGCTACCGGTCGTTCACTGAACGATGCCGTTGCTTTCAGGAACT TTGAGCGCGTATACGATGTGTAAGTATTCGTATTTTTTTCCTCATCAAGC CAACCAATCATACGTCGACGCCGACGCCTGCTCCATACTTACCGGTGGAT CGCCTCGCAAGTAGATGGCTAGCAGCTGGTGTCATCCTTGTGAAACACAG CCTGGCAACCTGGCAAGCGAAAACCCCGGAATATCGCCCCGTCCCGGCAT TGTTGAGACGCGTGGTCTATGCCCGTCTCGATAAGACATGCGTTTAACAA CCCCCCCCCCGCCCCTCGTCCGACTCGTCCTCGCGGACCCACGTGCCCGC TGGCCGCACGCACGCCACGAATGGCATGGATCATTCGCGGCGTGAAATAT TTTTGAACCAACGCAGAGTCCTCTTGGGCGTCCAAGCGACCTGGGCGGTC GGCTCCTTGTTCGTTGGCGTCGTGGCCTGGGCGGTGCTTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10250:2117..3407+

>mRNA_S-dermatodea_contig10250.185.1 ID=mRNA_S-dermatodea_contig10250.185.1|Name=mRNA_S-dermatodea_contig10250.185.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at S-dermatodea_contig10250:2117..3407+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GATGTTCCTCGGTGTCGTAAGCGACGTCTACGGCAGGCTCATTGGCTTCA
AGATCGCCACGATCCTCGTTGTGCTGTTTGGGCTACTGACAGTGGCGGCC
CCCGGCTTCTGGTGGCTGCTGCTATTCAGGAGCTTAGTCGGCGTCGGGGC
CGGCGGAATGGAGGTTCCCTTCGATCTCTTGAGCGAGATCGTTCCCCGGA
AGGACAGGGCGGAGATGTTCCTCGGTGTCGTAAGCGACGTCTACGGCAGG
CTCATTGGCTTCAAGATCGCCACGATCCTCGTTGTGCTGTTTGGGCTACT
GACAGTGGCGGCCCCCGGCTTCTGGTGGCTGCTGCTATTCAGGAGCTTAG
TCGGCGTCGGGGCCGGCGGAATGGAGGTTCCCTTCGATCTCTTGAGCGAG
ATCGTTCCCCGGAAGGACAGGGCGGAAGTCCTCTTGGGCGTCCAAGCGAC
CTGGGCGGTCGGCTCCTTGTTCGTTGGCGTCGTGGCCTGGGCGGTGCTTA
GAGTCCTCTTGGGCGTCCAAGCGACCTGGGCGGTCGGCTCCTTGTTCGTT
GGCGTCGTGGCCTGGGCGGTGCTTAG
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