mRNA_S-dermatodea_contig10249.182.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10249.182.1
Unique NamemRNA_S-dermatodea_contig10249.182.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10249.182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10249contigS-dermatodea_contig10249:3365..4835 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size309
Cds size309
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10249.182.1prot_S-dermatodea_contig10249.182.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10249 3365..4835 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924147.5447776-CDS-S-dermatodea_contig10249:3364..34031622924147.5447776-CDS-S-dermatodea_contig10249:3364..3403Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10249 3365..3403 -
1694079050.1037228-CDS-S-dermatodea_contig10249:3364..34031694079050.1037228-CDS-S-dermatodea_contig10249:3364..3403Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10249 3365..3403 -
1622924147.55542-CDS-S-dermatodea_contig10249:4039..41741622924147.55542-CDS-S-dermatodea_contig10249:4039..4174Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10249 4040..4174 -
1694079050.1163936-CDS-S-dermatodea_contig10249:4039..41741694079050.1163936-CDS-S-dermatodea_contig10249:4039..4174Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10249 4040..4174 -
1622924147.5636327-CDS-S-dermatodea_contig10249:4700..48351622924147.5636327-CDS-S-dermatodea_contig10249:4700..4835Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10249 4701..4835 -
1694079050.1331508-CDS-S-dermatodea_contig10249:4700..48351694079050.1331508-CDS-S-dermatodea_contig10249:4700..4835Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10249 4701..4835 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10249.182.1

>prot_S-dermatodea_contig10249.182.1 ID=prot_S-dermatodea_contig10249.182.1|Name=mRNA_S-dermatodea_contig10249.182.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=103bp
MRKVIDEKEAQQGKLLFEVECASTAEADVECLMVRVASLEKELAQERDER
LTAEQEVETQSAEGRRLERRLVAAQEAAIRAEDDAAICAQDVERVTTEMR
EAH
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mRNA from alignment at S-dermatodea_contig10249:3365..4835-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10249.182.1 ID=mRNA_S-dermatodea_contig10249.182.1|Name=mRNA_S-dermatodea_contig10249.182.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1471bp|location=Sequence derived from alignment at S-dermatodea_contig10249:3365..4835- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGCAAGGTAATCGACGAGAAAGAGGCGCAGCAGGGGAAGCTTCTGTT
CGAAGTGGAGTGCGCGTCGACCGCCGAGGCGGATGTTGAGTGCCTCATGG
TTCGCGTCGCCTCGTTGGAGAAAGAGCTGGCGCAGGTGAGACGGGTATAG
GCCGGCCCGGCCCGGTCCGGTCCGGTGCCGTGCTCGAGTTGCGATTGCTT
GAGGTGCCGGGGTGTGGCCGCCGTACCGCTTGTTTCAGTTTATTTGTATG
AGCAACACACGCCCTCACCCGTGTTTGGGGGGTGAAAAGTGGGTCGGCGG
AAGATACCCCGTGTCGCTCAGGTGCAGGGAAAACGTTTTTGAAGGGCACC
TTTCCTGTACGATGTGGCACACCTTACTTGTACGATGTGGCACACCAGAA
GGTAGGGTGCTGTCTGAACGCTGCGAACAACATTTGAAAAAAATGGCTCG
GGCGTTTTGTTACAATAGTGGCGTCTGCACTCACAAACTTCACACACGAG
AGTAGAAAGCAACGCCTCGCGAACATGCAGTCGCAGAACACACGTGTGAT
ACCTGCGTGATTCCTGTATTTGCTGTACACAGAATCGCCCATCAACCCGT
GGTCGCGACGAGTCCCCACGTCGCAACAATTGCTGTATTCCTTCCCCCCT
TTTTGCGGTAGGAGCGCGACGAGAGATTAACGGCGGAGCAGGAGGTAGAA
ACTCAATCGGCGGAAGGAAGGCGCCTGGAGAGGCGGCTTGTTGCTGCCCA
GGAGGCCGCGATTCGCGCCGAAGACGATGCTGCTATCTGCGCCCAGGTCA
GTGCTCTCTACTCCCGACGTGCCGGAACCGTTGGGCATGAAAAAATTCGT
AGCCTTCAAGCTTGCCTTTGAGGTCTGAGCGCGCTCACTTTATATCGTGA
CGGCCCCTGTCCAAGACGCGCGCCCTCTCGGAACGTGTGTACCTCTTGCA
TTTCCTTGACCCTATCCGGTAACTTGCATGCTACGGGCCGCATCGCTGCA
GCGAAAGCTGTGATGATGTAACATGGCCAACGTCCTCAAGCTTTCGGTGT
CGATTGCAGTTGTCGTTGCTAAACTTGTCCGGGCGCACGACCGTTAACAG
TGACAGCGACGCTGAGACAGGGTTGTGATGTCTCCGGTGTTCGAGTGCCC
TCCTCGAGCCCGGCATCTGACTTGGGCCGGCGAAAACATCGTATCGACGA
TTGTATCGGAAGGATCATTTATTTTCAATGTTGTCCGGGACTGCGTGTTG
CTGTAGCTGGTGTACGTAGACATTACGCAGCAAAGCCGAGAGTCTCAAGC
ACGACTACTACTATTGGTAGAACGGTGGTCGTGATTTACGAGCTTGTTCA
TTGTAGTCTGATGGCTGCACCATCTTCTATTATCGCTGTGTTGAAGCATC
TATCGCTTTCGCTGTCCGGCCGGTCCCCGCAGGACGTCGAAAGGGTAACC
ACCGAGATGCGCGAGGCACAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig10249:3365..4835-

>mRNA_S-dermatodea_contig10249.182.1 ID=mRNA_S-dermatodea_contig10249.182.1|Name=mRNA_S-dermatodea_contig10249.182.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at S-dermatodea_contig10249:3365..4835- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGCAAGGTAATCGACGAGAAAGAGGCGCAGCAGGGGAAGCTTCTGTT
CGAAGTGGAGTGCGCGTCGACCGCCGAGGCGGATGTTGAGTGCCTCATGG
TTCGCGTCGCCTCGTTGGAGAAAGAGCTGGCGCAGATGCGCAAGGTAATC
GACGAGAAAGAGGCGCAGCAGGGGAAGCTTCTGTTCGAAGTGGAGTGCGC
GTCGACCGCCGAGGCGGATGTTGAGTGCCTCATGGTTCGCGTCGCCTCGT
TGGAGAAAGAGCTGGCGCAGGAGCGCGACGAGAGATTAACGGCGGAGCAG
GAGGTAGAAACTCAATCGGCGGAAGGAAGGCGCCTGGAGAGGCGGCTTGT
TGCTGCCCAGGAGGCCGCGATTCGCGCCGAAGACGATGCTGCTATCTGCG
CCCAGGAGCGCGACGAGAGATTAACGGCGGAGCAGGAGGTAGAAACTCAA
TCGGCGGAAGGAAGGCGCCTGGAGAGGCGGCTTGTTGCTGCCCAGGAGGC
CGCGATTCGCGCCGAAGACGATGCTGCTATCTGCGCCCAGGACGTCGAAA
GGGTAACCACCGAGATGCGCGAGGCACACGACGTCGAAAGGGTAACCACC
GAGATGCGCGAGGCACAC
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