mRNA_S-dermatodea_contig10246.178.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10246.178.1
Unique NamemRNA_S-dermatodea_contig10246.178.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10246.178.1 vs. uniprot
Match: D7FIR5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIR5_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 3.980e-8
Identity = 22/28 (78.57%), Postives = 26/28 (92.86%), Query Frame = 1 
Query:   22 PNAWLGLLKWSLAHQDGTAPSEARPMSD 105
            P+AWLGLLKW+L+HQDGT PS+ARPM D
Sbjct:    7 PDAWLGLLKWTLSHQDGTEPSDARPMGD 34
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BLAST of mRNA_S-dermatodea_contig10246.178.1 vs. uniprot
Match: A0A1Z5JEB9_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JEB9_FISSO)

HSP 1 Score: 56.2 bits (134), Expect = 5.280e-8
Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    1 MADAPNDPNAWLGLLKWSLAHQDGTAPSEARPMSDT 108
            M+   NDP AWLGLLKWSLA+ DGT+PS   P+SD+
Sbjct:    1 MSSTSNDPWAWLGLLKWSLAYSDGTSPSATNPLSDS 36
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BLAST of mRNA_S-dermatodea_contig10246.178.1 vs. uniprot
Match: A0A7S2IJG9_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IJG9_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.900e-7
Identity = 24/31 (77.42%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:   16 NDPNAWLGLLKWSLAHQDGTAPS-EARPMSD 105
            N P AW+GLLKWSLAHQDGT PS E++PMSD
Sbjct:   13 NSPFAWMGLLKWSLAHQDGTRPSSESKPMSD 43
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BLAST of mRNA_S-dermatodea_contig10246.178.1 vs. uniprot
Match: A0A835YIP1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIP1_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.900e-7
Identity = 23/28 (82.14%), Postives = 24/28 (85.71%), Query Frame = 1 
Query:   19 DPNAWLGLLKWSLAHQDGTAPSEARPMS 102
            D   WLGLLKWSL HQDGTAPSEARP+S
Sbjct:    6 DNGIWLGLLKWSLKHQDGTAPSEARPLS 33
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BLAST of mRNA_S-dermatodea_contig10246.178.1 vs. uniprot
Match: A0A662X5A3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X5A3_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 6.930e-7
Identity = 18/30 (60.00%), Postives = 25/30 (83.33%), Query Frame = 1 
Query:   16 NDPNAWLGLLKWSLAHQDGTAPSEARPMSD 105
            +DPN WLGL+KW++ H DGT P+EA P+S+
Sbjct:   57 SDPNKWLGLMKWTMQHSDGTTPTEATPISE 86
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BLAST of mRNA_S-dermatodea_contig10246.178.1 vs. uniprot
Match: A0A662X9H0_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X9H0_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.300e-6
Identity = 18/30 (60.00%), Postives = 25/30 (83.33%), Query Frame = 1 
Query:   16 NDPNAWLGLLKWSLAHQDGTAPSEARPMSD 105
            +DPN WLGL+KW++ H DGT P+EA P+S+
Sbjct:    2 SDPNKWLGLMKWTMQHSDGTTPTEATPISE 31
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BLAST of mRNA_S-dermatodea_contig10246.178.1 vs. uniprot
Match: A0A7S1ZDQ8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZDQ8_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 3.190e-6
Identity = 23/31 (74.19%), Postives = 25/31 (80.65%), Query Frame = 1 
Query:   16 NDPNAWLGLLKWSLAHQDGTAPS-EARPMSD 105
            N P AWLGLLKWSLAHQDGT PS +  PMS+
Sbjct:    9 NSPFAWLGLLKWSLAHQDGTRPSSDVAPMSE 39
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BLAST of mRNA_S-dermatodea_contig10246.178.1 vs. uniprot
Match: A0A8K1CTK5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTK5_PYTOL)

HSP 1 Score: 49.7 bits (117), Expect = 1.110e-5
Identity = 17/28 (60.71%), Postives = 25/28 (89.29%), Query Frame = 1 
Query:   19 DPNAWLGLLKWSLAHQDGTAPSEARPMS 102
            DP+ WLGL++WS+ +QDGT P++A+PMS
Sbjct:    3 DPSKWLGLMRWSMKYQDGTVPTDAKPMS 30
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BLAST of mRNA_S-dermatodea_contig10246.178.1 vs. uniprot
Match: A0A6G0XIM0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XIM0_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 2.070e-5
Identity = 19/27 (70.37%), Postives = 22/27 (81.48%), Query Frame = 1 
Query:   19 DPNAWLGLLKWSLAHQDGTAPSEARPM 99
            DPN WLGLL+WS+  QDGTAPSE + M
Sbjct:    3 DPNKWLGLLRWSMQQQDGTAPSEFKAM 29
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BLAST of mRNA_S-dermatodea_contig10246.178.1 vs. uniprot
Match: A0A1E7FBX5_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FBX5_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 2.860e-5
Identity = 22/30 (73.33%), Postives = 25/30 (83.33%), Query Frame = 1 
Query:   19 DPNAWLGLLKWSLAHQDGTAPSE-ARPMSD 105
            DP AWLGLLKW+LAH DGT PS+ A+ MSD
Sbjct:   10 DPWAWLGLLKWTLAHSDGTKPSDPAKMMSD 39
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10246.178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FIR5_ECTSI3.980e-878.57Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1Z5JEB9_FISSO5.280e-863.89Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S2IJG9_9STRA1.900e-777.42Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A835YIP1_9STRA1.900e-782.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A662X5A3_9STRA6.930e-760.00Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A662X9H0_9STRA2.300e-660.00Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A7S1ZDQ8_9STRA3.190e-674.19Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A8K1CTK5_PYTOL1.110e-560.71Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6G0XIM0_9STRA2.070e-570.37Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1E7FBX5_9STRA2.860e-573.33Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10246contigS-dermatodea_contig10246:7939..8073 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size135
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924147.334711-CDS-S-dermatodea_contig10246:7938..80731622924147.334711-CDS-S-dermatodea_contig10246:7938..8073Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10246 7939..8073 +
1694079049.9902632-CDS-S-dermatodea_contig10246:7938..80731694079049.9902632-CDS-S-dermatodea_contig10246:7938..8073Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10246 7939..8073 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10246.178.1prot_S-dermatodea_contig10246.178.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10246 7939..8073 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10246.178.1

>prot_S-dermatodea_contig10246.178.1 ID=prot_S-dermatodea_contig10246.178.1|Name=mRNA_S-dermatodea_contig10246.178.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=45bp
MADAPNDPNAWLGLLKWSLAHQDGTAPSEARPMSDTVSSCASCT*
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mRNA from alignment at S-dermatodea_contig10246:7939..8073+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10246.178.1 ID=mRNA_S-dermatodea_contig10246.178.1|Name=mRNA_S-dermatodea_contig10246.178.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=135bp|location=Sequence derived from alignment at S-dermatodea_contig10246:7939..8073+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGGATGCTCCGAATGATCCAAACGCGTGGCTGGGGCTGCTGAAGTG
GTCGCTCGCTCACCAAGACGGCACCGCGCCTTCGGAGGCCCGCCCCATGT
CGGATACGGTGAGTTCGTGTGCCTCGTGCACGTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10246:7939..8073+

>mRNA_S-dermatodea_contig10246.178.1 ID=mRNA_S-dermatodea_contig10246.178.1|Name=mRNA_S-dermatodea_contig10246.178.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at S-dermatodea_contig10246:7939..8073+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGGATGCTCCGAATGATCCAAACGCGTGGCTGGGGCTGCTGAAGTG
GTCGCTCGCTCACCAAGACGGCACCGCGCCTTCGGAGGCCCGCCCCATGT
CGGATACGGTGAGTTCGTGTGCCTCGTGCACGTAGATGGCGGATGCTCCG
AATGATCCAAACGCGTGGCTGGGGCTGCTGAAGTGGTCGCTCGCTCACCA
AGACGGCACCGCGCCTTCGGAGGCCCGCCCCATGTCGGATACGGTGAGTT
CGTGTGCCTCGTGCACGTAG
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